Mercurial > repos > bebatut > package_humann2_0_5_0

changeset 0:831d511bc7a0 draft default tip

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
author bebatut
date Thu, 31 Mar 2016 03:20:53 -0400
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files tool_dependencies.xml
diffstat 1 files changed, 21 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Mar 31 03:20:53 2016 -0400
@@ -0,0 +1,21 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="humann2" version="0.5.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://bitbucket.org/biobakery/humann2/downloads/humann2_v0.5.0.tar.gz</action>
+                <action type="make_directory">$INSTALL_DIR/lib/python</action>
+                <action type="shell_command">
+                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
+                    python setup.py install --bypass-dependencies-install --install-lib $INSTALL_DIR/lib/python --install-scripts=$INSTALL_DIR/</action>
+                <action type="make_directory">$INSTALL_DIR/databases</action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
+                    <environment_variable name="HUMANN2_DIR" action="set_to">$INSTALL_DIR/</environment_variable>
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme></readme>
+    </package>
+</tool_dependency>
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