Mercurial > repos > bebatut > normalize_dataset

comparison normalize_dataset.xml @ 1:de82a5a1469b draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/asaim/galaxytools/tree/master/tools/normalize_dataset commit 21b25425f77162c0edae4dd87b3a9e33608c5a95-dirty
author bebatut
date Fri, 15 Apr 2016 08:41:59 -0400
parents 2ac4623ac41c
children
comparison
equal deleted inserted replaced
0:2ac4623ac41c 1:de82a5a1469b
1 <tool id="normalize_dataset" name="Normalize a dataset by" version="0.1.0"> 1 <tool id="normalize_dataset" name="Normalize a dataset by" version="0.1.0">
2 <description>row or column sum</description> 2 <description>row or column sum to obtain proportion or percentage</description>
3 3
4 <requirements> 4 <requirements>
5 </requirements> 5 </requirements>
6 6
7 <stdio> 7 <stdio>
37 <data name="output_file" format="tabular" 37 <data name="output_file" format="tabular"
38 label="${tool.name} on ${on_string}: Normalized dataset" /> 38 label="${tool.name} on ${on_string}: Normalized dataset" />
39 </outputs> 39 </outputs>
40 40
41 <tests> 41 <tests>
42 <test>
43 <param name="input_file" value="input_file.tabular"/>
44 <param name="normalization" value="column"/>
45 <param name="format" value="proportion"/>
46 <output name="output_file" file="output_column_proportion.tabular"/>
47 </test>
48 <test>
49 <param name="input_file" value="input_file.tabular"/>
50 <param name="normalization" value="row"/>
51 <param name="format" value="proportion"/>
52 <output name="output_file" file="output_row_proportion.tabular"/>
53 </test>
54 <test>
55 <param name="input_file" value="input_file.tabular"/>
56 <param name="normalization" value="column"/>
57 <param name="format" value="percentage"/>
58 <output name="output_file" file="output_column_percentage.tabular"/>
59 </test>
42 </tests> 60 </tests>
43 61
44 <help><![CDATA[ 62 <help><![CDATA[
45 **What it does** 63 **What it does**
46 64
47 This tool normalizes each row or column of a dataset by the row or column sum. 65 This tool normalizes each row or column of a dataset by the row or column sum.
66 The results can be in proportion or percentage.
48 67
68 The input file must be in tabular format with tab-separated columns. Only data will be used for normalization.
49 ]]></help> 69 ]]></help>
50 70
51 <citations> 71 <citations>
52 </citations> 72 </citations>
53 </tool> 73 </tool>