Mercurial > repos > bebatut > normalize_dataset

diff normalize_dataset.xml @ 1:de82a5a1469b draft default tip

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planemo upload for repository https://github.com/asaim/galaxytools/tree/master/tools/normalize_dataset commit 21b25425f77162c0edae4dd87b3a9e33608c5a95-dirty
author bebatut
date Fri, 15 Apr 2016 08:41:59 -0400
parents 2ac4623ac41c
children
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--- a/normalize_dataset.xml	Tue Apr 12 03:08:08 2016 -0400
+++ b/normalize_dataset.xml	Fri Apr 15 08:41:59 2016 -0400
@@ -1,5 +1,5 @@
 <tool id="normalize_dataset" name="Normalize a dataset by" version="0.1.0">
-    <description>row or column sum</description>
+    <description>row or column sum to obtain proportion or percentage</description>
 
     <requirements>
     </requirements>
@@ -39,13 +39,33 @@
     </outputs>
 
     <tests>
+        <test>
+            <param name="input_file" value="input_file.tabular"/>
+            <param name="normalization" value="column"/>
+            <param name="format" value="proportion"/>
+            <output name="output_file" file="output_column_proportion.tabular"/>
+        </test>
+        <test>
+            <param name="input_file" value="input_file.tabular"/>
+            <param name="normalization" value="row"/>
+            <param name="format" value="proportion"/>
+            <output name="output_file" file="output_row_proportion.tabular"/>
+        </test>
+        <test>
+            <param name="input_file" value="input_file.tabular"/>
+            <param name="normalization" value="column"/>
+            <param name="format" value="percentage"/>
+            <output name="output_file" file="output_column_percentage.tabular"/>
+        </test>
     </tests>
 
     <help><![CDATA[
-        **What it does**
+**What it does**
 
-        This tool normalizes each row or column of a dataset by the row or column sum.
+This tool normalizes each row or column of a dataset by the row or column sum.
+The results can be in proportion or percentage.
 
+The input file must be in tabular format with tab-separated columns. Only data will be used for normalization.
     ]]></help>
 
     <citations>