Mercurial > repos > bebatut > metaphlan2krona
changeset 4:81cc88a32834 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan2/ commit b'cf8373aeed58964f1d139a23cd1ec4698683c60e\n'-dirty
| author | bebatut |
|---|---|
| date | Thu, 02 Mar 2017 11:29:17 -0500 |
| parents | 31b4582e58d4 |
| children | |
| files | metaphlan2_macros.xml repository_dependencies.xml |
| diffstat | 2 files changed, 13 insertions(+), 1 deletions(-) [+] |
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--- a/metaphlan2_macros.xml Wed Mar 01 11:08:05 2017 -0500 +++ b/metaphlan2_macros.xml Thu Mar 02 11:29:17 2017 -0500 @@ -25,4 +25,16 @@ <citation type="doi">10.1038/nmeth.3589</citation> </citations> </xml> + <xml name="tax_lev"> + <param argument="--tax_lev" type="select" label="Taxonomic level for the relative abundance output"> + <option value="a" selected="true">All taxonomic levels</option> + <option value="k">Kingdoms (Bacteria and Archaea) only</option> + <option value="p">Phyla only</option> + <option value="c">Classes only</option> + <option value="o">Orders only</option> + <option value="f">Families only</option> + <option value="g">Genera only</option> + <option value="s">Species only</option> + </param> + </xml> </macros>
--- a/repository_dependencies.xml Wed Mar 01 11:08:05 2017 -0500 +++ b/repository_dependencies.xml Thu Mar 02 11:29:17 2017 -0500 @@ -1,4 +1,4 @@ <?xml version="1.0"?> <repositories description="This requires the MetaPhlAn2 data manager definition to install all required databases."> - <repository changeset_revision="8602983cb86f" name="data_manager_metaphlan2_database_downloader" owner="bebatut" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="bf858d6f7365" name="data_manager_metaphlan2_database_downloader" owner="bebatut" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </repositories>