Mercurial > repos > bebatut > metaphlan2

comparison tool_dependencies.xml @ 21:794951e4d986 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 41f2777b40defd42dae7aac18781c7dadf73847a
author bebatut
date Fri, 06 Nov 2015 11:00:16 -0500
parents 58e031637111
children 9ab0e6e9d1fb
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20:58e031637111 21:794951e4d986
5 </package> 5 </package>
6 <package name="metaphlan2" version="2.0"> 6 <package name="metaphlan2" version="2.0">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="download_by_url">https://bitbucket.org/biobakery/metaphlan2/get/default.zip</action> 9 <action type="download_by_url">https://bitbucket.org/biobakery/metaphlan2/get/default.zip</action>
10 <action type="make_directory">$INSTALL_DIR/metaphlan2</action>
11 <action type="move_directory_files"> 10 <action type="move_directory_files">
12 <source_directory>.</source_directory> 11 <source_directory>.</source_directory>
13 <destination_directory>$INSTALL_DIR/metaphlan2</destination_directory> 12 <destination_directory>$INSTALL_DIR/</destination_directory>
14 </action> 13 </action>
15 <action type="set_environment"> 14 <action type="set_environment">
16 <environment_variable action="set_to" name="METAPHLAN2_DIR">$INSTALL_DIR/biobakery-metaphlan2-d1016b2f4e10/</environment_variable> 15 <environment_variable action="set_to" name="METAPHLAN2_DIR">$INSTALL_DIR/biobakery-metaphlan2-d1016b2f4e10/</environment_variable>
17 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 16 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
18 </action> 17 </action>