Mercurial > repos > bebatut > metaphlan2

view tool_dependencies.xml @ 22:9ab0e6e9d1fb draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 283fe2285a4e95f4505133fc7fa1eee96a4d274d
author bebatut
date Tue, 17 Nov 2015 06:01:20 -0500
parents 794951e4d986
children 62f9857766e6
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<?xml version="1.0"?>
<tool_dependency>
    <package name="bowtie2" version="2.2.4">
        <repository changeset_revision="aef49b7f08b2" name="bowtie2" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="metaphlan2" version="2.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://bitbucket.org/biobakery/metaphlan2/get/default.zip</action>
                <action type="move_directory_files">
                    <source_directory>.</source_directory>
                    <destination_directory>$INSTALL_DIR/</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable action="set_to" name="METAPHLAN2_DIR">$INSTALL_DIR/biobakery-metaphlan2-d1016b2f4e10/</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme />
    </package>
</tool_dependency>