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annotate tool-data/metaphlan2_bowtie_db.loc.sample @ 28:1d993cca38e3 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit b467108d731001d89920aee31433a5b0a623c251-dirty
author bebatut
date Thu, 28 Apr 2016 07:04:50 -0400
parents fb2dc25a832d
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fb2dc25a832d planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit 5c45ed58045ce1686aa069403f8a9426ea20bac5-dirty
bebatut
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1 # Bowtie2 db have to be downloaded from https://bitbucket.org/biobakery/metaphlan2/src/5424bb911dfc/db_v20/?at=default (whole directory)
fb2dc25a832d planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit 5c45ed58045ce1686aa069403f8a9426ea20bac5-dirty
bebatut
parents:
diff changeset
2 #
fb2dc25a832d planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit 5c45ed58045ce1686aa069403f8a9426ea20bac5-dirty
bebatut
parents:
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3 #Since MetaPhlAn comes bundled with 1 Bowtie2 database, you can use it
fb2dc25a832d planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit 5c45ed58045ce1686aa069403f8a9426ea20bac5-dirty
bebatut
parents:
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4 #by downloading it as explained above and uncommenting the following lines.
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1d993cca38e3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit b467108d731001d89920aee31433a5b0a623c251-dirty
bebatut
parents: 27
diff changeset
5 #bowtie_db_v20 Defaut BowTie2 database $METAPHLAN2_DIR/db_v20/mpa_v20_m200