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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit e5b8f29dde45dddcda6ee283212dd1bdde487f87-dirty
author bebatut
date Fri, 18 Dec 2015 08:37:29 -0500
parents 2bf5fcf30e1f
children d084f63fbf30
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<?xml version="1.0"?>
<tool_dependency>
    <package name="bowtie2" version="2.2.5">
        <repository changeset_revision="f5582ac5ba3c" name="package_bowtie_2_2_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="metaphlan2" version="2.0">
        <repository changeset_revision="d041345c1c7b" name="package_metaphlan_2_0" owner="bebatut" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="diamond" version="0.7.10">
        <repository changeset_revision="f3f009bdca19" name="package_diamond_0_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="humann2" version="2.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://bitbucket.org/biobakery/humann2/downloads/humann2_v0.5.0.tar.gz</action>
                <action type="shell_command">export PYTHONPATH="$INSTALL_DIR/bin/lib/python/"</action>
                <action type="shell_command">python setup.py install --bypass-dependencies-install</action>
                <action type="make_directory">$INSTALL_DIR/databases</action>
                <action type="set_environment">
                    <environment_variable action="set_to" name="HUMANN2_DIR">$INSTALL_DIR/</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme />
    </package>
</tool_dependency>