Mercurial > repos > bebatut > humann2

comparison tool_dependencies.xml @ 6:d566de42554e draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit e5b8f29dde45dddcda6ee283212dd1bdde487f87-dirty
author bebatut
date Fri, 18 Dec 2015 08:37:29 -0500
parents 2bf5fcf30e1f
children d084f63fbf30
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5:2bf5fcf30e1f 6:d566de42554e
12 <package name="humann2" version="2.0"> 12 <package name="humann2" version="2.0">
13 <install version="1.0"> 13 <install version="1.0">
14 <actions> 14 <actions>
15 <action type="download_by_url">https://bitbucket.org/biobakery/humann2/downloads/humann2_v0.5.0.tar.gz</action> 15 <action type="download_by_url">https://bitbucket.org/biobakery/humann2/downloads/humann2_v0.5.0.tar.gz</action>
16 <action type="shell_command">export PYTHONPATH="$INSTALL_DIR/bin/lib/python/"</action> 16 <action type="shell_command">export PYTHONPATH="$INSTALL_DIR/bin/lib/python/"</action>
17 <action type="shell_command">python setup.py install --home=$INSTALL_DIR/bin</action> 17 <action type="shell_command">python setup.py install --bypass-dependencies-install</action>
18 <action type="make_directory">$INSTALL_DIR/databases</action> 18 <action type="make_directory">$INSTALL_DIR/databases</action>
19 <action type="set_environment"> 19 <action type="set_environment">
20 <environment_variable action="set_to" name="HUMANN2_DIR">$INSTALL_DIR/</environment_variable> 20 <environment_variable action="set_to" name="HUMANN2_DIR">$INSTALL_DIR/</environment_variable>
21 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 21 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
22 </action> 22 </action>