Mercurial > repos > bebatut > humann2

diff humann2_regroup_table.xml @ 9:7d2be77d5b83 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
author bebatut
date Thu, 31 Mar 2016 03:35:17 -0400
parents 0d3d44f13122
children e504cd2410a6
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line diff
--- a/humann2_regroup_table.xml	Mon Feb 22 07:09:45 2016 -0500
+++ b/humann2_regroup_table.xml	Thu Mar 31 03:35:17 2016 -0400
@@ -1,25 +1,21 @@
-<tool id="humann2_regroup_table" name="Regroup HUMAnN2 table features" version="0.1.0">
+<tool id="humann2_regroup_table" name="Regroup HUMAnN2 table features" version="0.5.0">
     <description></description>
 
-    <requirements>
-        <requirement type="package" version="2.2.4">bowtie2</requirement>
-        <requirement type="package" version="2.0">metaphlan2</requirement>
-        <requirement type="package" version="0.6.13">diamond</requirement>
-        <requirement type="package" version="2.0">humann2</requirement>
-    </requirements>
+    <macros>
+        <import>humann2_macros.xml</import>
+    </macros>
 
-    <stdio>
-        <exit_code range="1:" />
-    </stdio>
+    <expand macro="requirements"/>
+    <expand macro="stdio"/>
 
     <version_command>
 <![CDATA[
-    \${HUMANN2_DIR}/humann2_regroup_table --version
+    humann2_regroup_table --version
 ]]>
     </version_command>
 
     <command><![CDATA[
-        \${HUMANN2_DIR}/humann2_regroup_table
+        humann2_regroup_table
             -i $input_table
             -o $output_table
             --function $function