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comparison humann2_regroup_table.xml @ 9:7d2be77d5b83 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
author bebatut
date Thu, 31 Mar 2016 03:35:17 -0400
parents 0d3d44f13122
children e504cd2410a6
comparison
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8:0d3d44f13122 9:7d2be77d5b83
1 <tool id="humann2_regroup_table" name="Regroup HUMAnN2 table features" version="0.1.0"> 1 <tool id="humann2_regroup_table" name="Regroup HUMAnN2 table features" version="0.5.0">
2 <description></description> 2 <description></description>
3 3
4 <requirements> 4 <macros>
5 <requirement type="package" version="2.2.4">bowtie2</requirement> 5 <import>humann2_macros.xml</import>
6 <requirement type="package" version="2.0">metaphlan2</requirement> 6 </macros>
7 <requirement type="package" version="0.6.13">diamond</requirement>
8 <requirement type="package" version="2.0">humann2</requirement>
9 </requirements>
10 7
11 <stdio> 8 <expand macro="requirements"/>
12 <exit_code range="1:" /> 9 <expand macro="stdio"/>
13 </stdio>
14 10
15 <version_command> 11 <version_command>
16 <![CDATA[ 12 <![CDATA[
17 \${HUMANN2_DIR}/humann2_regroup_table --version 13 humann2_regroup_table --version
18 ]]> 14 ]]>
19 </version_command> 15 </version_command>
20 16
21 <command><![CDATA[ 17 <command><![CDATA[
22 \${HUMANN2_DIR}/humann2_regroup_table 18 humann2_regroup_table
23 -i $input_table 19 -i $input_table
24 -o $output_table 20 -o $output_table
25 --function $function 21 --function $function
26 22
27 #if $built_in.test: 23 #if $built_in.test: