Mercurial > repos > bebatut > data_manager_humann2_database_downloader

changeset 3:7b8c3728d7ca draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/data_managers/data_manager_humann2_database_downloader commit b'38ee3fbdc89e93fa2266e9a4e755a086bf564cc6\n'-dirty
author bebatut
date Wed, 01 Mar 2017 11:30:33 -0500
parents 332cb1b3b349
children 67ed09c25b64
files data_manager/data_manager_humann2_download.py tool-data/humann2_nucleotide_database.loc.sample tool-data/humann2_protein_database.loc.sample
diffstat 3 files changed, 8 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/data_manager_humann2_download.py	Mon Feb 20 11:04:47 2017 -0500
+++ b/data_manager/data_manager_humann2_download.py	Wed Mar 01 11:30:33 2017 -0500
@@ -121,7 +121,8 @@
         dict(
             dbkey=build,
             value=today.isoformat(),
-            name=HUMANN2_REFERENCE_DATA[build]))
+            name=HUMANN2_REFERENCE_DATA[build]),
+            path=db_target_dir)
 
 
 if __name__ == "__main__":
--- a/tool-data/humann2_nucleotide_database.loc.sample	Mon Feb 20 11:04:47 2017 -0500
+++ b/tool-data/humann2_nucleotide_database.loc.sample	Wed Mar 01 11:30:33 2017 -0500
@@ -1,4 +1,4 @@
 #This is a sample file distributed with Galaxy that enables tools
 #to use a directory of metagenomics files.  
 #file has this format (white space characters are TAB characters)
-#02_16_2014    ChocoPhlAn    chocophlan   /path/to/data
\ No newline at end of file
+#02_16_2014	ChocoPhlAn	chocophlan	/path/to/data
\ No newline at end of file
--- a/tool-data/humann2_protein_database.loc.sample	Mon Feb 20 11:04:47 2017 -0500
+++ b/tool-data/humann2_protein_database.loc.sample	Wed Mar 01 11:30:33 2017 -0500
@@ -1,8 +1,8 @@
 #This is a sample file distributed with Galaxy that enables tools
 #to use a directory of metagenomics files.  
 #file has this format (white space characters are TAB characters)
-#02_16_2014    Full UniRef50  uniref50_diamond    /path/to/data
-#02_16_2014    EC-filtered UniRef50   uniref50_ec_filtered_diamond    /path/to/data
-#02_16_2014    GO filtered UniRef50 for rapsearch2    uniref50_GO_filtered_rapsearch2    /path/to/data
-#02_16_2014    Full UniRef90  uniref90_diamond    /path/to/data
-#02_16_2014    EC-filtered UniRef90   uniref90_ec_filtered_diamond    /path/to/data
\ No newline at end of file
+#02_16_2014	Full UniRef50	uniref50_diamond	/path/to/data
+#02_16_2014	EC-filtered UniRef50	uniref50_ec_filtered_diamond	/path/to/data
+#02_16_2014	GO filtered UniRef50 for rapsearch2	uniref50_GO_filtered_rapsearch2	/path/to/data
+#02_16_2014	Full UniRef90	uniref90_diamond	/path/to/data
+#02_16_2014	EC-filtered UniRef90	uniref90_ec_filtered_diamond	/path/to/data
\ No newline at end of file