# HG changeset patch # User bebatut # Date 1488385833 18000 # Node ID 7b8c3728d7ca4490da8baecd0452b1d3955f9942 # Parent 332cb1b3b34975325f5720cd0a4f45fd34da5fe7 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/data_managers/data_manager_humann2_database_downloader commit b'38ee3fbdc89e93fa2266e9a4e755a086bf564cc6\n'-dirty diff -r 332cb1b3b349 -r 7b8c3728d7ca data_manager/data_manager_humann2_download.py --- a/data_manager/data_manager_humann2_download.py Mon Feb 20 11:04:47 2017 -0500 +++ b/data_manager/data_manager_humann2_download.py Wed Mar 01 11:30:33 2017 -0500 @@ -121,7 +121,8 @@ dict( dbkey=build, value=today.isoformat(), - name=HUMANN2_REFERENCE_DATA[build])) + name=HUMANN2_REFERENCE_DATA[build]), + path=db_target_dir) if __name__ == "__main__": diff -r 332cb1b3b349 -r 7b8c3728d7ca tool-data/humann2_nucleotide_database.loc.sample --- a/tool-data/humann2_nucleotide_database.loc.sample Mon Feb 20 11:04:47 2017 -0500 +++ b/tool-data/humann2_nucleotide_database.loc.sample Wed Mar 01 11:30:33 2017 -0500 @@ -1,4 +1,4 @@ #This is a sample file distributed with Galaxy that enables tools #to use a directory of metagenomics files. #file has this format (white space characters are TAB characters) -#02_16_2014 ChocoPhlAn chocophlan /path/to/data \ No newline at end of file +#02_16_2014 ChocoPhlAn chocophlan /path/to/data \ No newline at end of file diff -r 332cb1b3b349 -r 7b8c3728d7ca tool-data/humann2_protein_database.loc.sample --- a/tool-data/humann2_protein_database.loc.sample Mon Feb 20 11:04:47 2017 -0500 +++ b/tool-data/humann2_protein_database.loc.sample Wed Mar 01 11:30:33 2017 -0500 @@ -1,8 +1,8 @@ #This is a sample file distributed with Galaxy that enables tools #to use a directory of metagenomics files. #file has this format (white space characters are TAB characters) -#02_16_2014 Full UniRef50 uniref50_diamond /path/to/data -#02_16_2014 EC-filtered UniRef50 uniref50_ec_filtered_diamond /path/to/data -#02_16_2014 GO filtered UniRef50 for rapsearch2 uniref50_GO_filtered_rapsearch2 /path/to/data -#02_16_2014 Full UniRef90 uniref90_diamond /path/to/data -#02_16_2014 EC-filtered UniRef90 uniref90_ec_filtered_diamond /path/to/data \ No newline at end of file +#02_16_2014 Full UniRef50 uniref50_diamond /path/to/data +#02_16_2014 EC-filtered UniRef50 uniref50_ec_filtered_diamond /path/to/data +#02_16_2014 GO filtered UniRef50 for rapsearch2 uniref50_GO_filtered_rapsearch2 /path/to/data +#02_16_2014 Full UniRef90 uniref90_diamond /path/to/data +#02_16_2014 EC-filtered UniRef90 uniref90_ec_filtered_diamond /path/to/data \ No newline at end of file