Mercurial > repos > bebatut > data_manager_humann2_database_downloader

changeset 5:71114ccf1026 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/data_managers/data_manager_humann2_database_downloader commit b'318eb33ea866441cc9b2f98bdda88dd594037a0e\n'-dirty
author bebatut
date Thu, 02 Mar 2017 03:24:06 -0500
parents 67ed09c25b64
children 75898d1aabc3
files data_manager_conf.xml
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager_conf.xml	Wed Mar 01 11:49:55 2017 -0500
+++ b/data_manager_conf.xml	Thu Mar 02 03:24:06 2017 -0500
@@ -7,11 +7,11 @@
                 <column name="name" />  <!-- columns that are going to be specified by the Data Manager Tool -->
                 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
                 <column name="path" output_ref="out_file" >
-                    <move type="directory" relativize_symlinks="True">
+                    <move type="directory">
+                        <source>${path}</source>
                         <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">humann2/data/nucleotide_database/${dbkey}</target>
                     </move>
                     <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/humann2/data/nucleotide_database/${dbkey}</value_translation>
-                    <value_translation type="function">abspath</value_translation>
                 </column>
             </output>
         </data_table>
@@ -21,11 +21,11 @@
                 <column name="name" />  <!-- columns that are going to be specified by the Data Manager Tool -->
                 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
                 <column name="path" output_ref="out_file" >
-                    <move type="directory" relativize_symlinks="True">
+                    <move type="directory">
+                        <source>${path}</source>
                         <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">humann2/data/protein_database/${dbkey}</target>
                     </move>
                     <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/humann2/data/protein_database/${dbkey}</value_translation>
-                    <value_translation type="function">abspath</value_translation>
                 </column>
             </output>
         </data_table>