Mercurial > repos > bebatut > data_manager_humann2_database_downloader

comparison data_manager_conf.xml @ 5:71114ccf1026 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/data_managers/data_manager_humann2_database_downloader commit b'318eb33ea866441cc9b2f98bdda88dd594037a0e\n'-dirty
author bebatut
date Thu, 02 Mar 2017 03:24:06 -0500
parents a2a638c83c7c
children
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4:67ed09c25b64 5:71114ccf1026
5 <output> <!-- Handle the output of the Data Manager Tool --> 5 <output> <!-- Handle the output of the Data Manager Tool -->
6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> 6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> 7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
8 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool --> 8 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
9 <column name="path" output_ref="out_file" > 9 <column name="path" output_ref="out_file" >
10 <move type="directory" relativize_symlinks="True"> 10 <move type="directory">
11 <source>${path}</source>
11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">humann2/data/nucleotide_database/${dbkey}</target> 12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">humann2/data/nucleotide_database/${dbkey}</target>
12 </move> 13 </move>
13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/humann2/data/nucleotide_database/${dbkey}</value_translation> 14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/humann2/data/nucleotide_database/${dbkey}</value_translation>
14 <value_translation type="function">abspath</value_translation>
15 </column> 15 </column>
16 </output> 16 </output>
17 </data_table> 17 </data_table>
18 <data_table name="humann2_protein_database"> <!-- Defines a Data Table to be modified. --> 18 <data_table name="humann2_protein_database"> <!-- Defines a Data Table to be modified. -->
19 <output> <!-- Handle the output of the Data Manager Tool --> 19 <output> <!-- Handle the output of the Data Manager Tool -->
20 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> 20 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
21 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> 21 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
22 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool --> 22 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
23 <column name="path" output_ref="out_file" > 23 <column name="path" output_ref="out_file" >
24 <move type="directory" relativize_symlinks="True"> 24 <move type="directory">
25 <source>${path}</source>
25 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">humann2/data/protein_database/${dbkey}</target> 26 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">humann2/data/protein_database/${dbkey}</target>
26 </move> 27 </move>
27 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/humann2/data/protein_database/${dbkey}</value_translation> 28 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/humann2/data/protein_database/${dbkey}</value_translation>
28 <value_translation type="function">abspath</value_translation>
29 </column> 29 </column>
30 </output> 30 </output>
31 </data_table> 31 </data_table>
32 </data_manager> 32 </data_manager>
33 </data_managers> 33 </data_managers>