Mercurial > repos > bebatut > compare_humann2_output
diff test-data/specific_to_sample2_output.txt @ 2:9c24aa6d9a1f draft default tip
planemo upload for repository https://github.com/asaim/galaxytools/tree/master/tools/compare_humann2_output commit 9fcfd73aaf19aa65e2087ae003998f21971b6f9b-dirty
| author | bebatut |
|---|---|
| date | Wed, 20 Apr 2016 09:15:07 -0400 |
| parents | 22e031055f18 |
| children |
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--- a/test-data/specific_to_sample2_output.txt Wed Apr 20 08:29:20 2016 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,252 +0,0 @@ -id name abundances -PWY-6731 starch degradation III 0.0336222 -GLUDEG-I-PWY GABA shunt 0.0537709 -PWY-6123 inosine 5 phosphate biosynthesis I 0.831965 -PWY-6769 rhamnogalacturonan type I degradation I |unclassified 0.139081 -PWY-6471 peptidoglycan biosynthesis IV 0.0698193 -PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II 1.48474 -PPGPPMET-PWY ppGpp biosynthesis 0.203621 -PWY-7234 inosine 5 phosphate biosynthesis III 0.045368 -PWY-5686 UMP biosynthesis|unclassified 1.7892 -PWY-3841 folate transformations II 2.38544 -P185-PWY formaldehyde assimilation III 0.103843 -ILEUSYN-PWY L isoleucine biosynthesis I 1.29401 -PWY-3001 superpathway of L isoleucine biosynthesis I 0.142024 -PWY-5754 4 hydroxybenzoate biosynthesis I |unclassified 0.229464 -PWY-6737 starch degradation V|unclassified 0.316335 -PWY-5104 L isoleucine biosynthesis IV 0.831272 -PWY-7242 D fructuronate degradation 1.03935 -OANTIGEN-PWY O antigen building blocks biosynthesis 0.321981 -PWY-5667 CDP diacylglycerol biosynthesis I|unclassified 0.149856 -PWY-6606 guanosine nucleotides degradation II|unclassified 0.247734 -PWY66-422 D galactose degradation V |unclassified 1.04266 -PWY66-400 glycolysis VI 0.938218 -PWY66-389 phytol degradation 0.548391 -PWY-5097 L lysine biosynthesis VI 1.04893 -1CMET2-PWY N10 formyl tetrahydrofolate biosynthesis|unclassified 0.834716 -PWY-6386 UDP N acetylmuramoyl pentapeptide biosynthesis II 0.0904748 -PWY4LZ-257 superpathway of fermentation 0.147873 -PWY-6549 L glutamine biosynthesis III 0.508899 -GLCMANNANAUT-PWY superpathway of N acetylglucosamine, N acetylmannosamine and N acetylneuraminate degradation|unclassified 0.123299 -PWY-7111 pyruvate fermentation to isobutanol |unclassified 1.73067 -PEPTIDOGLYCANSYN-PWY peptidoglycan biosynthesis I 0.850699 -PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD ME type 0.187881 -P241-PWY coenzyme B biosynthesis|unclassified 0.0707035 -PWY-6124 inosine 5 phosphate biosynthesis II|unclassified 2.22455 -PWY-5173 superpathway of acetyl CoA biosynthesis|unclassified 0.0785602 -PWY-7316 dTDP N acetylviosamine biosynthesis 0.542069 -PWY-5101 L isoleucine biosynthesis II|unclassified 0.617859 -PEPTIDOGLYCANSYN-PWY peptidoglycan biosynthesis I |unclassified 1.16221 -PWY-6769 rhamnogalacturonan type I degradation I 0.0634893 -GLUCUROCAT-PWY superpathway of β D glucuronide and D glucuronate degradation 0.838546 -PWY-7219 adenosine ribonucleotides de novo biosynthesis|unclassified 3.33171 -PWY4LZ-257 superpathway of fermentation |unclassified 0.318099 -ARGSYN-PWY L arginine biosynthesis I 1.16946 -PWY-5100 pyruvate fermentation to acetate and lactate II|unclassified 1.26625 -ARO-PWY chorismate biosynthesis I 0.39449 -ARGSYNBSUB-PWY L arginine biosynthesis II 1.02161 -PWY-6936 seleno amino acid biosynthesis 1.2799 -PWY-6595 superpathway of guanosine nucleotides degradation |unclassified 0.225538 -ANAGLYCOLYSIS-PWY glycolysis III 1.03937 -PWY0-162 superpathway of pyrimidine ribonucleotides de novo biosynthesis|unclassified 0.295685 -PWY-841 superpathway of purine nucleotides de novo biosynthesis I 0.531622 -PWY-5505 L glutamate and L glutamine biosynthesis|g__Bacteroides.s__Bacteroides_thetaiotaomicron 1.44739 -THRESYN-PWY superpathway of L threonine biosynthesis|unclassified 0.188356 -PWY-5941 glycogen degradation II 0.127166 -PWY-7094 fatty acid salvage 0.0597229 -CITRULBIO-PWY L citrulline biosynthesis|unclassified 0.49408 -PWY-7221 guanosine ribonucleotides de novo biosynthesis 1.88123 -ARGSYNBSUB-PWY L arginine biosynthesis II |unclassified 1.31054 -PWY-6630 superpathway of L tyrosine biosynthesis 0.319673 -RIBOSYN2-PWY flavin biosynthesis I |unclassified 0.213182 -PWY-2942 L lysine biosynthesis III|unclassified 1.10762 -PWY-7094 fatty acid salvage|unclassified 0.125407 -PWY-1042 glycolysis IV |unclassified 1.93529 -VALSYN-PWY L valine biosynthesis 1.29401 -PWY-6277 superpathway of 5 aminoimidazole ribonucleotide biosynthesis|unclassified 0.521078 -PWY-7219 adenosine ribonucleotides de novo biosynthesis 1.57923 -PWY-6309 L tryptophan degradation XI 0.0615914 -PWY-6703 preQ0 biosynthesis|unclassified 1.3368 -PWY-7007 methyl ketone biosynthesis 0.0659038 -PWY0-1319 CDP diacylglycerol biosynthesis II 0.384585 -PWY-5030 L histidine degradation III|unclassified 1.20381 -PWY0-162 superpathway of pyrimidine ribonucleotides de novo biosynthesis 1.19161 -1CMET2-PWY N10 formyl tetrahydrofolate biosynthesis 2.12689 -VALSYN-PWY L valine biosynthesis|unclassified 1.59474 -PWY-5857 ubiquinol 10 biosynthesis |unclassified 0.342548 -PWY-5505 L glutamate and L glutamine biosynthesis 1.53682 -PWY-6387 UDP N acetylmuramoyl pentapeptide biosynthesis I |unclassified 0.973219 -GLYCOLYSIS glycolysis I 0.769956 -PWY-6387 UDP N acetylmuramoyl pentapeptide biosynthesis I 0.731247 -PWY-7208 superpathway of pyrimidine nucleobases salvage|unclassified 1.75918 -PWY-5136 fatty acid β oxidation II |unclassified 0.144209 -PWY-6122 5 aminoimidazole ribonucleotide biosynthesis II|unclassified 0.521078 -PWY-2942 L lysine biosynthesis III 0.959218 -PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II|unclassified 2.01368 -PWY-6277 superpathway of 5 aminoimidazole ribonucleotide biosynthesis 0.237867 -PWY-6126 superpathway of adenosine nucleotides de novo biosynthesis II|unclassified 2.44065 -ANAEROFRUCAT-PWY homolactic fermentation|unclassified 1.57977 -PWY0-1061 superpathway of L alanine biosynthesis|unclassified 0.374653 -PYRIDNUCSYN-PWY NAD biosynthesis I |unclassified 0.68348 -GLYOXYLATE-BYPASS glyoxylate cycle|unclassified 0.0395503 -GLYCOL-GLYOXDEG-PWY superpathway of glycol metabolism and degradation 0.0175574 -PWY-4984 urea cycle 1.18794 -PWY-6549 L glutamine biosynthesis III|unclassified 0.776607 -PWY-6385 peptidoglycan biosynthesis III |unclassified 0.930133 -PWY0-1319 CDP diacylglycerol biosynthesis II|unclassified 0.149856 -PHOSLIPSYN-PWY superpathway of phospholipid biosynthesis I 0.460395 -FASYN-INITIAL-PWY superpathway of fatty acid biosynthesis initiation 0.744755 -PWY-7398 coumarins biosynthesis |unclassified 0.0600083 -PYRIDNUCSYN-PWY NAD biosynthesis I 0.361602 -PYRIDOXSYN-PWY pyridoxal 5 phosphate biosynthesis I|unclassified 3.41296 -NONOXIPENT-PWY pentose phosphate pathway 0.862082 -PWY-5941 glycogen degradation II |unclassified 0.241599 -P161-PWY acetylene degradation|unclassified 0.261072 -PWY-6126 superpathway of adenosine nucleotides de novo biosynthesis II 1.50984 -HOMOSER-METSYN-PWY L methionine biosynthesis I|unclassified 1.09381 -PWY-6731 starch degradation III|unclassified 0.0708616 -PWY-6125 superpathway of guanosine nucleotides de novo biosynthesis II 1.55645 -PWY-6435 4 hydroxybenzoate biosynthesis V 0.125364 -PWY66-389 phytol degradation|unclassified 0.638472 -TRNA-CHARGING-PWY tRNA charging 0.946058 -PWY-7237 myo , chiro and scillo inositol degradation 0.520322 -PWY-6527 stachyose degradation|unclassified 0.683934 -PWY-7007 methyl ketone biosynthesis|unclassified 0.122854 -PWY-6124 inosine 5 phosphate biosynthesis II 1.01549 -PWY-5690 TCA cycle II |unclassified 0.358601 -PWY0-1586 peptidoglycan maturation 0.0751931 -PWY-5100 pyruvate fermentation to acetate and lactate II 1.70667 -GLUCONEO-PWY gluconeogenesis I 1.18442 -PWY66-400 glycolysis VI |unclassified 0.933907 -PWY-5104 L isoleucine biosynthesis IV|unclassified 0.65428 -PWY-5754 4 hydroxybenzoate biosynthesis I 0.104748 -PWY-1042 glycolysis IV 1.75553 -PWY-4041 γ glutamyl cycle|unclassified 0.0590201 -SO4ASSIM-PWY sulfate reduction I 0.00696955 -THRESYN-PWY superpathway of L threonine biosynthesis 0.0904039 -PWY-6703 preQ0 biosynthesis 1.39768 -PWY-6163 chorismate biosynthesis from 3 dehydroquinate|unclassified 0.781711 -PWY-7229 superpathway of adenosine nucleotides de novo biosynthesis I 1.55872 -PWY-7229 superpathway of adenosine nucleotides de novo biosynthesis I|unclassified 2.61337 -PWY-3001 superpathway of L isoleucine biosynthesis I|unclassified 0.27671 -SER-GLYSYN-PWY superpathway of L serine and glycine biosynthesis I|unclassified 0.288758 -PWY-7111 pyruvate fermentation to isobutanol 0.876945 -CALVIN-PWY Calvin Benson Bassham cycle 1.79034 -PWY-5855 ubiquinol 7 biosynthesis 0.15637 -PWY-5097 L lysine biosynthesis VI|unclassified 1.16003 -HOMOSER-METSYN-PWY L methionine biosynthesis I 1.58217 -PWY66-422 D galactose degradation V |g__Bacteroides.s__Bacteroides_stercoris 1.49592 -PWY-7237 myo , chiro and scillo inositol degradation|unclassified 1.13983 -PYRIDOXSYN-PWY pyridoxal 5 phosphate biosynthesis I 2.45442 -PWY-5855 ubiquinol 7 biosynthesis |unclassified 0.342548 -PWY-5659 GDP mannose biosynthesis 1.3223 -FASYN-INITIAL-PWY superpathway of fatty acid biosynthesis initiation |unclassified 0.788309 -PWY-6507 4 deoxy L threo hex 4 enopyranuronate degradation 1.00585 -PWY-7388 octanoyl [acyl carrier protein] biosynthesis 0.409733 -PWY-6435 4 hydroxybenzoate biosynthesis V|unclassified 0.274625 -PWY-6122 5 aminoimidazole ribonucleotide biosynthesis II 0.237867 -PWY1F-823 leucopelargonidin and leucocyanidin biosynthesis|unclassified 0.109947 -PWY4FS-7 phosphatidylglycerol biosynthesis I 0.518363 -PWY-6121 5 aminoimidazole ribonucleotide biosynthesis I|unclassified 0.566097 -PWY-5103 L isoleucine biosynthesis III|unclassified 0.718443 -PWY-7316 dTDP N acetylviosamine biosynthesis|unclassified 1.10149 -ILEUSYN-PWY L isoleucine biosynthesis I |unclassified 1.59474 -GALACTUROCAT-PWY D galacturonate degradation I 1.12548 -P161-PWY acetylene degradation 0.119177 -PWY-5030 L histidine degradation III 1.22713 -PWY-5484 glycolysis II |unclassified 1.34471 -GLYCOL-GLYOXDEG-PWY superpathway of glycol metabolism and degradation|unclassified 0.0384618 -PWY-7211 superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis 0.250236 -GLYOXYLATE-BYPASS glyoxylate cycle 0.0182141 -PWY-7228 superpathway of guanosine nucleotides de novo biosynthesis I 1.69262 -PWY-6527 stachyose degradation 0.354951 -GLUTORN-PWY L ornithine biosynthesis 0.808734 -PWY-7400 L arginine biosynthesis IV 1.18235 -PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II|unclassified 2.01368 -ARO-PWY chorismate biosynthesis I|unclassified 0.783533 -PWY-4041 γ glutamyl cycle 0.0269421 -BRANCHED-CHAIN-AA-SYN-PWY superpathway of branched amino acid biosynthesis|unclassified 0.857417 -CALVIN-PWY Calvin Benson Bassham cycle|unclassified 2.40344 -PWY-5690 TCA cycle II 0.322218 -P105-PWY TCA cycle IV 0.262013 -PWY-5136 fatty acid β oxidation II 0.0698245 -PWY-6471 peptidoglycan biosynthesis IV |unclassified 0.142191 -PWY-6386 UDP N acetylmuramoyl pentapeptide biosynthesis II |unclassified 0.183333 -PWY-5464 superpathway of cytosolic glycolysis , pyruvate dehydrogenase and TCA cycle 0.0992505 -PWY-7208 superpathway of pyrimidine nucleobases salvage 2.06908 -ANAGLYCOLYSIS-PWY glycolysis III |unclassified 1.85171 -PWY-6309 L tryptophan degradation XI |unclassified 0.134924 -PWY4FS-8 phosphatidylglycerol biosynthesis II 0.518363 -PWY0-1061 superpathway of L alanine biosynthesis 0.216957 -PWY0-1586 peptidoglycan maturation |unclassified 0.14413 -PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II 1.48474 -P441-PWY superpathway of N acetylneuraminate degradation 0.162577 -SER-GLYSYN-PWY superpathway of L serine and glycine biosynthesis I 1.2955 -PWY-7398 coumarins biosynthesis 0.0273932 -UDPNAGSYN-PWY UDP N acetyl D glucosamine biosynthesis I|unclassified 0.656183 -PWY-5154 L arginine biosynthesis III 0.881081 -PWY-5484 glycolysis II 0.749543 -UDPNAGSYN-PWY UDP N acetyl D glucosamine biosynthesis I 0.338583 -ANAEROFRUCAT-PWY homolactic fermentation 0.88 -THISYNARA-PWY superpathway of thiamin diphosphate biosynthesis III |unclassified 0.21303 -PWY-6123 inosine 5 phosphate biosynthesis I|unclassified 1.82252 -PWY-6121 5 aminoimidazole ribonucleotide biosynthesis I 0.258418 -COA-PWY-1 coenzyme A biosynthesis II 1.9437 -PWY-6936 seleno amino acid biosynthesis|unclassified 1.32349 -PWY-6163 chorismate biosynthesis from 3 dehydroquinate 0.410329 -PWY-5667 CDP diacylglycerol biosynthesis I 0.384585 -PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I 0.770993 -PWY-3841 folate transformations II|unclassified 2.27477 -CITRULBIO-PWY L citrulline biosynthesis 0.974607 -RHAMCAT-PWY L rhamnose degradation I 0.539026 -PWY-724 superpathway of L lysine, L threonine and L methionine biosynthesis II|unclassified 0.29625 -GLUTORN-PWY L ornithine biosynthesis|unclassified 0.900908 -PWY-5265 peptidoglycan biosynthesis II |unclassified 0.209837 -PWY-5464 superpathway of cytosolic glycolysis , pyruvate dehydrogenase and TCA cycle|unclassified 0.172005 -PWY-6606 guanosine nucleotides degradation II 0.113088 -OANTIGEN-PWY O antigen building blocks biosynthesis |unclassified 0.620846 -PWY-7388 octanoyl [acyl carrier protein] biosynthesis |unclassified 0.641891 -P185-PWY formaldehyde assimilation III |unclassified 0.115303 -METHGLYUT-PWY superpathway of methylglyoxal degradation 0.226728 -PWY-6737 starch degradation V 0.201137 -PWY-724 superpathway of L lysine, L threonine and L methionine biosynthesis II 0.142842 -NONOXIPENT-PWY pentose phosphate pathway |unclassified 1.8885 -DAPLYSINESYN-PWY L lysine biosynthesis I 0.35429 -PWY-6628 superpathway of L phenylalanine biosynthesis 0.49241 -THISYNARA-PWY superpathway of thiamin diphosphate biosynthesis III 0.0973654 -PWY-6385 peptidoglycan biosynthesis III 0.820786 -PWY1F-823 leucopelargonidin and leucocyanidin biosynthesis 0.0501896 -ASPASN-PWY superpathway of L aspartate and L asparagine biosynthesis 1.09751 -P105-PWY TCA cycle IV |unclassified 0.340536 -TRNA-CHARGING-PWY tRNA charging|unclassified 0.526713 -GALACT-GLUCUROCAT-PWY superpathway of hexuronide and hexuronate degradation 0.391566 -PWY-5173 superpathway of acetyl CoA biosynthesis 0.0372086 -FAO-PWY fatty acid β oxidation I 0.0714249 -P241-PWY coenzyme B biosynthesis 0.0322755 -COMPLETE-ARO-PWY superpathway of aromatic amino acid biosynthesis|unclassified 0.862669 -HISDEG-PWY L histidine degradation I 0.519408 -COMPLETE-ARO-PWY superpathway of aromatic amino acid biosynthesis 0.439273 -DAPLYSINESYN-PWY L lysine biosynthesis I|unclassified 0.314147 -PWY-5103 L isoleucine biosynthesis III 0.831677 -GLUDEG-I-PWY GABA shunt|unclassified 0.1173 -GLCMANNANAUT-PWY superpathway of N acetylglucosamine, N acetylmannosamine and N acetylneuraminate degradation 0.0651572 -P441-PWY superpathway of N acetylneuraminate degradation|unclassified 0.204428 -PWY-5686 UMP biosynthesis 0.980672 -PWY-6595 superpathway of guanosine nucleotides degradation 0.102956 -PWY66-422 D galactose degradation V 1.75745 -PWY-5505 L glutamate and L glutamine biosynthesis|unclassified 1.96045 -PWY-6305 putrescine biosynthesis IV 0.333385 -HISDEG-PWY L histidine degradation I|unclassified 0.770332 -PWY-5659 GDP mannose biosynthesis|unclassified 0.106616 -FAO-PWY fatty acid β oxidation I|unclassified 0.148771 -METHGLYUT-PWY superpathway of methylglyoxal degradation|unclassified 0.496676 -DENOVOPURINE2-PWY superpathway of purine nucleotides de novo biosynthesis II 0.14462 -PWY-5857 ubiquinol 10 biosynthesis 0.15637 -PWY-5101 L isoleucine biosynthesis II 0.492461 -RIBOSYN2-PWY flavin biosynthesis I 0.11474 -SO4ASSIM-PWY sulfate reduction I |unclassified 0.015138 -BRANCHED-CHAIN-AA-SYN-PWY superpathway of branched amino acid biosynthesis 1.02856 -PWY-5265 peptidoglycan biosynthesis II 0.106882 -ASPASN-PWY superpathway of L aspartate and L asparagine biosynthesis|unclassified 1.92205 -PWY-7234 inosine 5 phosphate biosynthesis III|unclassified 0.0993843 -GLYCOLYSIS glycolysis I |unclassified 1.37456