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comparison test-data/specific_to_sample2_output.txt @ 2:9c24aa6d9a1f draft default tip

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planemo upload for repository https://github.com/asaim/galaxytools/tree/master/tools/compare_humann2_output commit 9fcfd73aaf19aa65e2087ae003998f21971b6f9b-dirty
author bebatut
date Wed, 20 Apr 2016 09:15:07 -0400
parents 22e031055f18
children
comparison
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1:22e031055f18 2:9c24aa6d9a1f
1 id name abundances
2 PWY-6731 starch degradation III 0.0336222
3 GLUDEG-I-PWY GABA shunt 0.0537709
4 PWY-6123 inosine 5 phosphate biosynthesis I 0.831965
5 PWY-6769 rhamnogalacturonan type I degradation I |unclassified 0.139081
6 PWY-6471 peptidoglycan biosynthesis IV 0.0698193
7 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II 1.48474
8 PPGPPMET-PWY ppGpp biosynthesis 0.203621
9 PWY-7234 inosine 5 phosphate biosynthesis III 0.045368
10 PWY-5686 UMP biosynthesis|unclassified 1.7892
11 PWY-3841 folate transformations II 2.38544
12 P185-PWY formaldehyde assimilation III 0.103843
13 ILEUSYN-PWY L isoleucine biosynthesis I 1.29401
14 PWY-3001 superpathway of L isoleucine biosynthesis I 0.142024
15 PWY-5754 4 hydroxybenzoate biosynthesis I |unclassified 0.229464
16 PWY-6737 starch degradation V|unclassified 0.316335
17 PWY-5104 L isoleucine biosynthesis IV 0.831272
18 PWY-7242 D fructuronate degradation 1.03935
19 OANTIGEN-PWY O antigen building blocks biosynthesis 0.321981
20 PWY-5667 CDP diacylglycerol biosynthesis I|unclassified 0.149856
21 PWY-6606 guanosine nucleotides degradation II|unclassified 0.247734
22 PWY66-422 D galactose degradation V |unclassified 1.04266
23 PWY66-400 glycolysis VI 0.938218
24 PWY66-389 phytol degradation 0.548391
25 PWY-5097 L lysine biosynthesis VI 1.04893
26 1CMET2-PWY N10 formyl tetrahydrofolate biosynthesis|unclassified 0.834716
27 PWY-6386 UDP N acetylmuramoyl pentapeptide biosynthesis II 0.0904748
28 PWY4LZ-257 superpathway of fermentation 0.147873
29 PWY-6549 L glutamine biosynthesis III 0.508899
30 GLCMANNANAUT-PWY superpathway of N acetylglucosamine, N acetylmannosamine and N acetylneuraminate degradation|unclassified 0.123299
31 PWY-7111 pyruvate fermentation to isobutanol |unclassified 1.73067
32 PEPTIDOGLYCANSYN-PWY peptidoglycan biosynthesis I 0.850699
33 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD ME type 0.187881
34 P241-PWY coenzyme B biosynthesis|unclassified 0.0707035
35 PWY-6124 inosine 5 phosphate biosynthesis II|unclassified 2.22455
36 PWY-5173 superpathway of acetyl CoA biosynthesis|unclassified 0.0785602
37 PWY-7316 dTDP N acetylviosamine biosynthesis 0.542069
38 PWY-5101 L isoleucine biosynthesis II|unclassified 0.617859
39 PEPTIDOGLYCANSYN-PWY peptidoglycan biosynthesis I |unclassified 1.16221
40 PWY-6769 rhamnogalacturonan type I degradation I 0.0634893
41 GLUCUROCAT-PWY superpathway of β D glucuronide and D glucuronate degradation 0.838546
42 PWY-7219 adenosine ribonucleotides de novo biosynthesis|unclassified 3.33171
43 PWY4LZ-257 superpathway of fermentation |unclassified 0.318099
44 ARGSYN-PWY L arginine biosynthesis I 1.16946
45 PWY-5100 pyruvate fermentation to acetate and lactate II|unclassified 1.26625
46 ARO-PWY chorismate biosynthesis I 0.39449
47 ARGSYNBSUB-PWY L arginine biosynthesis II 1.02161
48 PWY-6936 seleno amino acid biosynthesis 1.2799
49 PWY-6595 superpathway of guanosine nucleotides degradation |unclassified 0.225538
50 ANAGLYCOLYSIS-PWY glycolysis III 1.03937
51 PWY0-162 superpathway of pyrimidine ribonucleotides de novo biosynthesis|unclassified 0.295685
52 PWY-841 superpathway of purine nucleotides de novo biosynthesis I 0.531622
53 PWY-5505 L glutamate and L glutamine biosynthesis|g__Bacteroides.s__Bacteroides_thetaiotaomicron 1.44739
54 THRESYN-PWY superpathway of L threonine biosynthesis|unclassified 0.188356
55 PWY-5941 glycogen degradation II 0.127166
56 PWY-7094 fatty acid salvage 0.0597229
57 CITRULBIO-PWY L citrulline biosynthesis|unclassified 0.49408
58 PWY-7221 guanosine ribonucleotides de novo biosynthesis 1.88123
59 ARGSYNBSUB-PWY L arginine biosynthesis II |unclassified 1.31054
60 PWY-6630 superpathway of L tyrosine biosynthesis 0.319673
61 RIBOSYN2-PWY flavin biosynthesis I |unclassified 0.213182
62 PWY-2942 L lysine biosynthesis III|unclassified 1.10762
63 PWY-7094 fatty acid salvage|unclassified 0.125407
64 PWY-1042 glycolysis IV |unclassified 1.93529
65 VALSYN-PWY L valine biosynthesis 1.29401
66 PWY-6277 superpathway of 5 aminoimidazole ribonucleotide biosynthesis|unclassified 0.521078
67 PWY-7219 adenosine ribonucleotides de novo biosynthesis 1.57923
68 PWY-6309 L tryptophan degradation XI 0.0615914
69 PWY-6703 preQ0 biosynthesis|unclassified 1.3368
70 PWY-7007 methyl ketone biosynthesis 0.0659038
71 PWY0-1319 CDP diacylglycerol biosynthesis II 0.384585
72 PWY-5030 L histidine degradation III|unclassified 1.20381
73 PWY0-162 superpathway of pyrimidine ribonucleotides de novo biosynthesis 1.19161
74 1CMET2-PWY N10 formyl tetrahydrofolate biosynthesis 2.12689
75 VALSYN-PWY L valine biosynthesis|unclassified 1.59474
76 PWY-5857 ubiquinol 10 biosynthesis |unclassified 0.342548
77 PWY-5505 L glutamate and L glutamine biosynthesis 1.53682
78 PWY-6387 UDP N acetylmuramoyl pentapeptide biosynthesis I |unclassified 0.973219
79 GLYCOLYSIS glycolysis I 0.769956
80 PWY-6387 UDP N acetylmuramoyl pentapeptide biosynthesis I 0.731247
81 PWY-7208 superpathway of pyrimidine nucleobases salvage|unclassified 1.75918
82 PWY-5136 fatty acid β oxidation II |unclassified 0.144209
83 PWY-6122 5 aminoimidazole ribonucleotide biosynthesis II|unclassified 0.521078
84 PWY-2942 L lysine biosynthesis III 0.959218
85 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II|unclassified 2.01368
86 PWY-6277 superpathway of 5 aminoimidazole ribonucleotide biosynthesis 0.237867
87 PWY-6126 superpathway of adenosine nucleotides de novo biosynthesis II|unclassified 2.44065
88 ANAEROFRUCAT-PWY homolactic fermentation|unclassified 1.57977
89 PWY0-1061 superpathway of L alanine biosynthesis|unclassified 0.374653
90 PYRIDNUCSYN-PWY NAD biosynthesis I |unclassified 0.68348
91 GLYOXYLATE-BYPASS glyoxylate cycle|unclassified 0.0395503
92 GLYCOL-GLYOXDEG-PWY superpathway of glycol metabolism and degradation 0.0175574
93 PWY-4984 urea cycle 1.18794
94 PWY-6549 L glutamine biosynthesis III|unclassified 0.776607
95 PWY-6385 peptidoglycan biosynthesis III |unclassified 0.930133
96 PWY0-1319 CDP diacylglycerol biosynthesis II|unclassified 0.149856
97 PHOSLIPSYN-PWY superpathway of phospholipid biosynthesis I 0.460395
98 FASYN-INITIAL-PWY superpathway of fatty acid biosynthesis initiation 0.744755
99 PWY-7398 coumarins biosynthesis |unclassified 0.0600083
100 PYRIDNUCSYN-PWY NAD biosynthesis I 0.361602
101 PYRIDOXSYN-PWY pyridoxal 5 phosphate biosynthesis I|unclassified 3.41296
102 NONOXIPENT-PWY pentose phosphate pathway 0.862082
103 PWY-5941 glycogen degradation II |unclassified 0.241599
104 P161-PWY acetylene degradation|unclassified 0.261072
105 PWY-6126 superpathway of adenosine nucleotides de novo biosynthesis II 1.50984
106 HOMOSER-METSYN-PWY L methionine biosynthesis I|unclassified 1.09381
107 PWY-6731 starch degradation III|unclassified 0.0708616
108 PWY-6125 superpathway of guanosine nucleotides de novo biosynthesis II 1.55645
109 PWY-6435 4 hydroxybenzoate biosynthesis V 0.125364
110 PWY66-389 phytol degradation|unclassified 0.638472
111 TRNA-CHARGING-PWY tRNA charging 0.946058
112 PWY-7237 myo , chiro and scillo inositol degradation 0.520322
113 PWY-6527 stachyose degradation|unclassified 0.683934
114 PWY-7007 methyl ketone biosynthesis|unclassified 0.122854
115 PWY-6124 inosine 5 phosphate biosynthesis II 1.01549
116 PWY-5690 TCA cycle II |unclassified 0.358601
117 PWY0-1586 peptidoglycan maturation 0.0751931
118 PWY-5100 pyruvate fermentation to acetate and lactate II 1.70667
119 GLUCONEO-PWY gluconeogenesis I 1.18442
120 PWY66-400 glycolysis VI |unclassified 0.933907
121 PWY-5104 L isoleucine biosynthesis IV|unclassified 0.65428
122 PWY-5754 4 hydroxybenzoate biosynthesis I 0.104748
123 PWY-1042 glycolysis IV 1.75553
124 PWY-4041 γ glutamyl cycle|unclassified 0.0590201
125 SO4ASSIM-PWY sulfate reduction I 0.00696955
126 THRESYN-PWY superpathway of L threonine biosynthesis 0.0904039
127 PWY-6703 preQ0 biosynthesis 1.39768
128 PWY-6163 chorismate biosynthesis from 3 dehydroquinate|unclassified 0.781711
129 PWY-7229 superpathway of adenosine nucleotides de novo biosynthesis I 1.55872
130 PWY-7229 superpathway of adenosine nucleotides de novo biosynthesis I|unclassified 2.61337
131 PWY-3001 superpathway of L isoleucine biosynthesis I|unclassified 0.27671
132 SER-GLYSYN-PWY superpathway of L serine and glycine biosynthesis I|unclassified 0.288758
133 PWY-7111 pyruvate fermentation to isobutanol 0.876945
134 CALVIN-PWY Calvin Benson Bassham cycle 1.79034
135 PWY-5855 ubiquinol 7 biosynthesis 0.15637
136 PWY-5097 L lysine biosynthesis VI|unclassified 1.16003
137 HOMOSER-METSYN-PWY L methionine biosynthesis I 1.58217
138 PWY66-422 D galactose degradation V |g__Bacteroides.s__Bacteroides_stercoris 1.49592
139 PWY-7237 myo , chiro and scillo inositol degradation|unclassified 1.13983
140 PYRIDOXSYN-PWY pyridoxal 5 phosphate biosynthesis I 2.45442
141 PWY-5855 ubiquinol 7 biosynthesis |unclassified 0.342548
142 PWY-5659 GDP mannose biosynthesis 1.3223
143 FASYN-INITIAL-PWY superpathway of fatty acid biosynthesis initiation |unclassified 0.788309
144 PWY-6507 4 deoxy L threo hex 4 enopyranuronate degradation 1.00585
145 PWY-7388 octanoyl [acyl carrier protein] biosynthesis 0.409733
146 PWY-6435 4 hydroxybenzoate biosynthesis V|unclassified 0.274625
147 PWY-6122 5 aminoimidazole ribonucleotide biosynthesis II 0.237867
148 PWY1F-823 leucopelargonidin and leucocyanidin biosynthesis|unclassified 0.109947
149 PWY4FS-7 phosphatidylglycerol biosynthesis I 0.518363
150 PWY-6121 5 aminoimidazole ribonucleotide biosynthesis I|unclassified 0.566097
151 PWY-5103 L isoleucine biosynthesis III|unclassified 0.718443
152 PWY-7316 dTDP N acetylviosamine biosynthesis|unclassified 1.10149
153 ILEUSYN-PWY L isoleucine biosynthesis I |unclassified 1.59474
154 GALACTUROCAT-PWY D galacturonate degradation I 1.12548
155 P161-PWY acetylene degradation 0.119177
156 PWY-5030 L histidine degradation III 1.22713
157 PWY-5484 glycolysis II |unclassified 1.34471
158 GLYCOL-GLYOXDEG-PWY superpathway of glycol metabolism and degradation|unclassified 0.0384618
159 PWY-7211 superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis 0.250236
160 GLYOXYLATE-BYPASS glyoxylate cycle 0.0182141
161 PWY-7228 superpathway of guanosine nucleotides de novo biosynthesis I 1.69262
162 PWY-6527 stachyose degradation 0.354951
163 GLUTORN-PWY L ornithine biosynthesis 0.808734
164 PWY-7400 L arginine biosynthesis IV 1.18235
165 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II|unclassified 2.01368
166 ARO-PWY chorismate biosynthesis I|unclassified 0.783533
167 PWY-4041 γ glutamyl cycle 0.0269421
168 BRANCHED-CHAIN-AA-SYN-PWY superpathway of branched amino acid biosynthesis|unclassified 0.857417
169 CALVIN-PWY Calvin Benson Bassham cycle|unclassified 2.40344
170 PWY-5690 TCA cycle II 0.322218
171 P105-PWY TCA cycle IV 0.262013
172 PWY-5136 fatty acid β oxidation II 0.0698245
173 PWY-6471 peptidoglycan biosynthesis IV |unclassified 0.142191
174 PWY-6386 UDP N acetylmuramoyl pentapeptide biosynthesis II |unclassified 0.183333
175 PWY-5464 superpathway of cytosolic glycolysis , pyruvate dehydrogenase and TCA cycle 0.0992505
176 PWY-7208 superpathway of pyrimidine nucleobases salvage 2.06908
177 ANAGLYCOLYSIS-PWY glycolysis III |unclassified 1.85171
178 PWY-6309 L tryptophan degradation XI |unclassified 0.134924
179 PWY4FS-8 phosphatidylglycerol biosynthesis II 0.518363
180 PWY0-1061 superpathway of L alanine biosynthesis 0.216957
181 PWY0-1586 peptidoglycan maturation |unclassified 0.14413
182 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II 1.48474
183 P441-PWY superpathway of N acetylneuraminate degradation 0.162577
184 SER-GLYSYN-PWY superpathway of L serine and glycine biosynthesis I 1.2955
185 PWY-7398 coumarins biosynthesis 0.0273932
186 UDPNAGSYN-PWY UDP N acetyl D glucosamine biosynthesis I|unclassified 0.656183
187 PWY-5154 L arginine biosynthesis III 0.881081
188 PWY-5484 glycolysis II 0.749543
189 UDPNAGSYN-PWY UDP N acetyl D glucosamine biosynthesis I 0.338583
190 ANAEROFRUCAT-PWY homolactic fermentation 0.88
191 THISYNARA-PWY superpathway of thiamin diphosphate biosynthesis III |unclassified 0.21303
192 PWY-6123 inosine 5 phosphate biosynthesis I|unclassified 1.82252
193 PWY-6121 5 aminoimidazole ribonucleotide biosynthesis I 0.258418
194 COA-PWY-1 coenzyme A biosynthesis II 1.9437
195 PWY-6936 seleno amino acid biosynthesis|unclassified 1.32349
196 PWY-6163 chorismate biosynthesis from 3 dehydroquinate 0.410329
197 PWY-5667 CDP diacylglycerol biosynthesis I 0.384585
198 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I 0.770993
199 PWY-3841 folate transformations II|unclassified 2.27477
200 CITRULBIO-PWY L citrulline biosynthesis 0.974607
201 RHAMCAT-PWY L rhamnose degradation I 0.539026
202 PWY-724 superpathway of L lysine, L threonine and L methionine biosynthesis II|unclassified 0.29625
203 GLUTORN-PWY L ornithine biosynthesis|unclassified 0.900908
204 PWY-5265 peptidoglycan biosynthesis II |unclassified 0.209837
205 PWY-5464 superpathway of cytosolic glycolysis , pyruvate dehydrogenase and TCA cycle|unclassified 0.172005
206 PWY-6606 guanosine nucleotides degradation II 0.113088
207 OANTIGEN-PWY O antigen building blocks biosynthesis |unclassified 0.620846
208 PWY-7388 octanoyl [acyl carrier protein] biosynthesis |unclassified 0.641891
209 P185-PWY formaldehyde assimilation III |unclassified 0.115303
210 METHGLYUT-PWY superpathway of methylglyoxal degradation 0.226728
211 PWY-6737 starch degradation V 0.201137
212 PWY-724 superpathway of L lysine, L threonine and L methionine biosynthesis II 0.142842
213 NONOXIPENT-PWY pentose phosphate pathway |unclassified 1.8885
214 DAPLYSINESYN-PWY L lysine biosynthesis I 0.35429
215 PWY-6628 superpathway of L phenylalanine biosynthesis 0.49241
216 THISYNARA-PWY superpathway of thiamin diphosphate biosynthesis III 0.0973654
217 PWY-6385 peptidoglycan biosynthesis III 0.820786
218 PWY1F-823 leucopelargonidin and leucocyanidin biosynthesis 0.0501896
219 ASPASN-PWY superpathway of L aspartate and L asparagine biosynthesis 1.09751
220 P105-PWY TCA cycle IV |unclassified 0.340536
221 TRNA-CHARGING-PWY tRNA charging|unclassified 0.526713
222 GALACT-GLUCUROCAT-PWY superpathway of hexuronide and hexuronate degradation 0.391566
223 PWY-5173 superpathway of acetyl CoA biosynthesis 0.0372086
224 FAO-PWY fatty acid β oxidation I 0.0714249
225 P241-PWY coenzyme B biosynthesis 0.0322755
226 COMPLETE-ARO-PWY superpathway of aromatic amino acid biosynthesis|unclassified 0.862669
227 HISDEG-PWY L histidine degradation I 0.519408
228 COMPLETE-ARO-PWY superpathway of aromatic amino acid biosynthesis 0.439273
229 DAPLYSINESYN-PWY L lysine biosynthesis I|unclassified 0.314147
230 PWY-5103 L isoleucine biosynthesis III 0.831677
231 GLUDEG-I-PWY GABA shunt|unclassified 0.1173
232 GLCMANNANAUT-PWY superpathway of N acetylglucosamine, N acetylmannosamine and N acetylneuraminate degradation 0.0651572
233 P441-PWY superpathway of N acetylneuraminate degradation|unclassified 0.204428
234 PWY-5686 UMP biosynthesis 0.980672
235 PWY-6595 superpathway of guanosine nucleotides degradation 0.102956
236 PWY66-422 D galactose degradation V 1.75745
237 PWY-5505 L glutamate and L glutamine biosynthesis|unclassified 1.96045
238 PWY-6305 putrescine biosynthesis IV 0.333385
239 HISDEG-PWY L histidine degradation I|unclassified 0.770332
240 PWY-5659 GDP mannose biosynthesis|unclassified 0.106616
241 FAO-PWY fatty acid β oxidation I|unclassified 0.148771
242 METHGLYUT-PWY superpathway of methylglyoxal degradation|unclassified 0.496676
243 DENOVOPURINE2-PWY superpathway of purine nucleotides de novo biosynthesis II 0.14462
244 PWY-5857 ubiquinol 10 biosynthesis 0.15637
245 PWY-5101 L isoleucine biosynthesis II 0.492461
246 RIBOSYN2-PWY flavin biosynthesis I 0.11474
247 SO4ASSIM-PWY sulfate reduction I |unclassified 0.015138
248 BRANCHED-CHAIN-AA-SYN-PWY superpathway of branched amino acid biosynthesis 1.02856
249 PWY-5265 peptidoglycan biosynthesis II 0.106882
250 ASPASN-PWY superpathway of L aspartate and L asparagine biosynthesis|unclassified 1.92205
251 PWY-7234 inosine 5 phosphate biosynthesis III|unclassified 0.0993843
252 GLYCOLYSIS glycolysis I |unclassified 1.37456