Mercurial > repos > bebatut > cdhit

comparison tool_dependencies.xml @ 3:626cd6334dbc draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/cdhit/ commit ea0424ae045ac797c080aeabab9a8536f7eb2f84-dirty
author bebatut
date Mon, 25 Apr 2016 12:13:50 -0400
parents aa923171e225
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2:aa923171e225 3:626cd6334dbc
13 <source>cd-hit-est</source> 13 <source>cd-hit-est</source>
14 <destination>$INSTALL_DIR</destination> 14 <destination>$INSTALL_DIR</destination>
15 </action> 15 </action>
16 <action type="set_environment"> 16 <action type="set_environment">
17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> 17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
18 <environment_variable name="CDHIT_SITE_OPTIONS" action="set_to">"-M 4000 -T 0"</environment_variable> 18 <environment_variable name="CDHIT_SITE_OPTIONS" action="set_to">"-M 4000"</environment_variable>
19 </action> 19 </action>
20 </actions> 20 </actions>
21 </install> 21 </install>
22 <readme> 22 <readme>
23 These links provide information for building the cdhit package: 23 These links provide information for building the cdhit package:
27 https://code.google.com/p/cdhit/ 27 https://code.google.com/p/cdhit/
28 28
29 https://code.google.com/p/cdhit/source/browse/README 29 https://code.google.com/p/cdhit/source/browse/README
30 30
31 Change the CDHIT_SITE_OPTIONS variable in the installed env.sh file to adjust 31 Change the CDHIT_SITE_OPTIONS variable in the installed env.sh file to adjust
32 the maximum memory Mb (-M) or to limit the number of threads (-T) 32 the maximum memory Mb (-M).
33 to match your site
34 </readme> 33 </readme>
35 </package> 34 </package>
36 </tool_dependency> 35 </tool_dependency>
37