Mercurial > repos > bcclaywell > microbiome_community_suite

diff getAttributeList.xml @ 0:12b4f093e6c4 draft default tip

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planemo upload commit 2774930eebe258ecd56c8f1c5ddabf5092282ab9
author bcclaywell
date Mon, 12 Oct 2015 16:46:15 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/getAttributeList.xml	Mon Oct 12 16:46:15 2015 -0400
@@ -0,0 +1,30 @@
+<tool id="getAttributeList" name="Get Attribute List" version="0.0.16">
+  <description>Get available attributes from a community file.</description>
+  <requirements>
+    <requirement type="package" version="3.1.2">R</requirement>
+    <requirement type="package" version="2014-05-02">microbiome_community</requirement>
+  </requirements>
+  <command interpreter="Rscript --vanilla">getAttributeList.R
+       #if str($CommunityFile).strip() != "":
+          --CommunityFile="$CommunityFile"
+       #end if
+       #if str($OutputFile).strip() != "":
+          --OutputFile="$OutputFile"
+       #end if
+
+2&gt;&amp;1</command>
+  <inputs>
+    <param optional="false" name="CommunityFile" format="rda" type="data" help="created by the 'community' function." label="[required] Community File">
+      <validator type="empty_field" message="This field is required."/>
+    </param>
+  </inputs>
+  <outputs>
+    <data format="txt" name="OutputFile" label="attributes.txt"/>
+  </outputs>
+  <help>
+**Description**
+
+Display available attributes from a community file, for use with
+other Microbiome Workflow tools.
+</help>
+</tool>