Mercurial > repos > bcclaywell > microbiome_community_suite

comparison getAttributeList.xml @ 0:12b4f093e6c4 draft default tip

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planemo upload commit 2774930eebe258ecd56c8f1c5ddabf5092282ab9
author bcclaywell
date Mon, 12 Oct 2015 16:46:15 -0400
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-1:000000000000 0:12b4f093e6c4
1 <tool id="getAttributeList" name="Get Attribute List" version="0.0.16">
2 <description>Get available attributes from a community file.</description>
3 <requirements>
4 <requirement type="package" version="3.1.2">R</requirement>
5 <requirement type="package" version="2014-05-02">microbiome_community</requirement>
6 </requirements>
7 <command interpreter="Rscript --vanilla">getAttributeList.R
8 #if str($CommunityFile).strip() != "":
9 --CommunityFile="$CommunityFile"
10 #end if
11 #if str($OutputFile).strip() != "":
12 --OutputFile="$OutputFile"
13 #end if
14
15 2&gt;&amp;1</command>
16 <inputs>
17 <param optional="false" name="CommunityFile" format="rda" type="data" help="created by the 'community' function." label="[required] Community File">
18 <validator type="empty_field" message="This field is required."/>
19 </param>
20 </inputs>
21 <outputs>
22 <data format="txt" name="OutputFile" label="attributes.txt"/>
23 </outputs>
24 <help>
25 **Description**
26
27 Display available attributes from a community file, for use with
28 other Microbiome Workflow tools.
29 </help>
30 </tool>