Mercurial > repos > bcclaywell > argo_navis
view venv/lib/python2.7/site-packages/planemo/config.py @ 0:d67268158946 draft
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
author | bcclaywell |
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date | Mon, 12 Oct 2015 17:43:33 -0400 |
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import os import yaml PLANEMO_CONFIG_ENV_PROP = "PLANEMO_GLOBAL_CONFIG_PATH" DEFAULT_CONFIG = { } def get_default_callback(default, name=None): def callback(ctx, param, value): planemo_ctx = ctx.obj config_name = name if config_name is None: config_name = param.name return _default_option(planemo_ctx, config_name, value, default) return callback # TODO: delete the following stuff. def populate_kwds(ctx, options_hash, kwds): """ Iterate over default option hash and use value from ~/.planemo.yml configuration if set or else the specified default. Populate kwds with this configured default value. """ for name, default in options_hash.items(): _populate_default_output(ctx, name, kwds, default) def _populate_default_output(ctx, kwd_key, kwds, default): kwd_value = kwds.get(kwd_key, None) if kwd_value is None: global_config = ctx.global_config global_config_key = "default_%s" % kwd_key if global_config_key in global_config: default_value = global_config[global_config_key] else: default_value = default if default_value: default_value = os.path.abspath(default_value) kwds[kwd_key] = default_value def _default_option(ctx, kwd_key, kwd_value, default): value = kwd_value if value is None: global_config = ctx.global_config global_config_key = "default_%s" % kwd_key if global_config_key in global_config: default_value = global_config[global_config_key] else: default_value = default value = default_value return value def global_config_path(config_path=None): if not config_path: config_path = os.environ.get( PLANEMO_CONFIG_ENV_PROP, "~/.planemo.yml" ) config_path = os.path.expanduser(config_path) return config_path def read_global_config(config_path): config_path = global_config_path(config_path) if not os.path.exists(config_path): return DEFAULT_CONFIG with open(config_path) as f: return yaml.load(f)