Mercurial > repos > bcclaywell > argo_navis
diff venv/lib/python2.7/site-packages/planemo/config.py @ 0:d67268158946 draft
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
author | bcclaywell |
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date | Mon, 12 Oct 2015 17:43:33 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/venv/lib/python2.7/site-packages/planemo/config.py Mon Oct 12 17:43:33 2015 -0400 @@ -0,0 +1,79 @@ +import os +import yaml + +PLANEMO_CONFIG_ENV_PROP = "PLANEMO_GLOBAL_CONFIG_PATH" +DEFAULT_CONFIG = { +} + + +def get_default_callback(default, name=None): + + def callback(ctx, param, value): + planemo_ctx = ctx.obj + config_name = name + if config_name is None: + config_name = param.name + + return _default_option(planemo_ctx, config_name, value, default) + + return callback + + +# TODO: delete the following stuff. +def populate_kwds(ctx, options_hash, kwds): + """ Iterate over default option hash and use value from + ~/.planemo.yml configuration if set or else the specified + default. Populate kwds with this configured default value. + """ + for name, default in options_hash.items(): + _populate_default_output(ctx, name, kwds, default) + + +def _populate_default_output(ctx, kwd_key, kwds, default): + kwd_value = kwds.get(kwd_key, None) + if kwd_value is None: + global_config = ctx.global_config + global_config_key = "default_%s" % kwd_key + if global_config_key in global_config: + default_value = global_config[global_config_key] + else: + default_value = default + + if default_value: + default_value = os.path.abspath(default_value) + kwds[kwd_key] = default_value + + +def _default_option(ctx, kwd_key, kwd_value, default): + value = kwd_value + + if value is None: + global_config = ctx.global_config + global_config_key = "default_%s" % kwd_key + if global_config_key in global_config: + default_value = global_config[global_config_key] + else: + default_value = default + + value = default_value + + return value + + +def global_config_path(config_path=None): + if not config_path: + config_path = os.environ.get( + PLANEMO_CONFIG_ENV_PROP, + "~/.planemo.yml" + ) + config_path = os.path.expanduser(config_path) + return config_path + + +def read_global_config(config_path): + config_path = global_config_path(config_path) + if not os.path.exists(config_path): + return DEFAULT_CONFIG + + with open(config_path) as f: + return yaml.load(f)