Mercurial > repos > bcclaywell > argo_navis
view venv/lib/python2.7/site-packages/bioblend/__init__.py @ 0:d67268158946 draft
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
author | bcclaywell |
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date | Mon, 12 Oct 2015 17:43:33 -0400 |
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import logging import os from bioblend.config import Config, BioBlendConfigLocations # Current version of the library __version__ = '0.6.1' # default chunk size (in bytes) for reading remote data try: import resource CHUNK_SIZE = resource.getpagesize() except Exception: CHUNK_SIZE = 4096 config = Config() def get_version(): """ Returns a string with the current version of the library (e.g., "0.2.0") """ return __version__ def init_logging(): """ Initialize BioBlend's logging from a configuration file. """ for config_file in BioBlendConfigLocations: try: logging.config.fileConfig(os.path.expanduser(config_file)) except: pass class NullHandler(logging.Handler): def emit(self, record): pass # By default, do not force any logging by the library. If you want to see the # log messages in your scripts, add the following to the top of your script: # import logging # logging.basicConfig(filename="bioblend.log", level=logging.DEBUG) default_format_string = "%(asctime)s %(name)s [%(levelname)s]: %(message)s" log = logging.getLogger('bioblend') log.addHandler(NullHandler()) init_logging() # Convenience functions to set logging to a particular file or stream # To enable either of these, simply add the following at the top of a # bioblend module: # import bioblend # bioblend.set_stream_logger(__name__) def set_file_logger(name, filepath, level=logging.INFO, format_string=None): global log if not format_string: format_string = default_format_string logger = logging.getLogger(name) logger.setLevel(level) fh = logging.FileHandler(filepath) fh.setLevel(level) formatter = logging.Formatter(format_string) fh.setFormatter(formatter) logger.addHandler(fh) log = logger def set_stream_logger(name, level=logging.DEBUG, format_string=None): global log if not format_string: format_string = default_format_string logger = logging.getLogger(name) logger.setLevel(level) fh = logging.StreamHandler() fh.setLevel(level) formatter = logging.Formatter(format_string) fh.setFormatter(formatter) logger.addHandler(fh) log = logger