diff venv/lib/python2.7/site-packages/bioblend/__init__.py @ 0:d67268158946 draft

planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
author bcclaywell
date Mon, 12 Oct 2015 17:43:33 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/venv/lib/python2.7/site-packages/bioblend/__init__.py	Mon Oct 12 17:43:33 2015 -0400
@@ -0,0 +1,84 @@
+import logging
+import os
+
+from bioblend.config import Config, BioBlendConfigLocations
+
+# Current version of the library
+__version__ = '0.6.1'
+
+# default chunk size (in bytes) for reading remote data
+try:
+    import resource
+    CHUNK_SIZE = resource.getpagesize()
+except Exception:
+    CHUNK_SIZE = 4096
+
+
+config = Config()
+
+
+def get_version():
+    """
+    Returns a string with the current version of the library (e.g., "0.2.0")
+    """
+    return __version__
+
+
+def init_logging():
+    """
+    Initialize BioBlend's logging from a configuration file.
+    """
+    for config_file in BioBlendConfigLocations:
+        try:
+            logging.config.fileConfig(os.path.expanduser(config_file))
+        except:
+            pass
+
+
+class NullHandler(logging.Handler):
+    def emit(self, record):
+        pass
+
+# By default, do not force any logging by the library. If you want to see the
+# log messages in your scripts, add the following to the top of your script:
+#   import logging
+#   logging.basicConfig(filename="bioblend.log", level=logging.DEBUG)
+
+default_format_string = "%(asctime)s %(name)s [%(levelname)s]: %(message)s"
+log = logging.getLogger('bioblend')
+log.addHandler(NullHandler())
+init_logging()
+
+# Convenience functions to set logging to a particular file or stream
+# To enable either of these, simply add the following at the top of a
+# bioblend module:
+#   import bioblend
+#   bioblend.set_stream_logger(__name__)
+
+
+def set_file_logger(name, filepath, level=logging.INFO, format_string=None):
+    global log
+    if not format_string:
+        format_string = default_format_string
+    logger = logging.getLogger(name)
+    logger.setLevel(level)
+    fh = logging.FileHandler(filepath)
+    fh.setLevel(level)
+    formatter = logging.Formatter(format_string)
+    fh.setFormatter(formatter)
+    logger.addHandler(fh)
+    log = logger
+
+
+def set_stream_logger(name, level=logging.DEBUG, format_string=None):
+    global log
+    if not format_string:
+        format_string = default_format_string
+    logger = logging.getLogger(name)
+    logger.setLevel(level)
+    fh = logging.StreamHandler()
+    fh.setLevel(level)
+    formatter = logging.Formatter(format_string)
+    fh.setFormatter(formatter)
+    logger.addHandler(fh)
+    log = logger