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1 OBJ_DIR = ../../../obj/
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2 BIN_DIR = ../../../bin/
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3 UTILITIES_DIR = ../
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4 # -------------------
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5 # define our includes
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6 # -------------------
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7 INCLUDES = -I$(UTILITIES_DIR)/lineFileUtilities/ \
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8 -I$(UTILITIES_DIR)/fileType/ \
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9 -I$(UTILITIES_DIR)/BamTools/include/
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10
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11 # ----------------------------------
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12 # define our source and object files
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13 # ----------------------------------
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14 SOURCES= genomeFile.cpp
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15 OBJECTS= $(SOURCES:.cpp=.o)
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16 _EXT_OBJECTS=lineFileUtilities.o fileType.o
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17 EXT_OBJECTS=$(patsubst %,$(OBJ_DIR)/%,$(_EXT_OBJECTS))
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18 BUILT_OBJECTS= $(patsubst %,$(OBJ_DIR)/%,$(OBJECTS))
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19
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20 $(BUILT_OBJECTS): $(SOURCES)
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21 @echo " * compiling" $(*F).cpp
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22 @$(CXX) -c -o $@ $(*F).cpp $(LDFLAGS) $(CXXFLAGS) $(INCLUDES) -L$(BT_ROOT)/lib
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23
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24 $(EXT_OBJECTS):
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25 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/lineFileUtilities/
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26 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/fileType/
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27
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28 clean:
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29 @echo "Cleaning up."
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30 @rm -f $(OBJ_DIR)/* $(BIN_DIR)/*
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31
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32 .PHONY: clean
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