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Repository mummer_toolsuite
Name: mummer_toolsuite
Owner: abossers
Synopsis: This suite contains MUMmer genome alignment tools and parsers
The MUMmer suite is a set of basic and advanced wrappers for the MUMmer genome comparison tools.
Most common operations should be possible by using these wrappers. MUMmer works fast on
smaller (bacterial) genomes but can also cope with eukaryotic genomes.

In addition to the original MUMmer tools it also contains an additional conversion script
to convert MUMmer comparison files (so-called coords files) into a readible format for
Artemis Comparison Tool (ACTX Sanger UK).

MUMmer 3.2 or newer required.
Link to this repository: https://eddie.galaxyproject.org/view/abossers/mummer_toolsuite/3aee0a8068b0
Clone this repository: hg clone https://eddie.galaxyproject.org/repos/abossers/mummer_toolsuite
Type: unrestricted
Revision: 5:3aee0a8068b0
This revision can be installed: True
Times cloned / installed: 357
Dependencies of this repository

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
gnuplot 4.6 package
mummer 3.23 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
: order sequence matches in clusters 0.9.alx any
: Show and filter on sequence delta file 0.9.alx any
: convert MUMmer comparison (coords) file to ACT (Artemis) 0.1.alx any
: Maximal exact sequence matching 0.9.alx any
: Generate MUMmerplots from MUMmer match file 1.0.1 any
: Compare and plot genomes (Nucmer or Promer) 0.4.alx any

Categories
Graphics - Tools producing images
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Variant Analysis - Tools for sequence variation data such as WGA and VCF