Repository 'msp_blastparser_and_hits'
hg clone https://eddie.galaxyproject.org/repos/drosofff/msp_blastparser_and_hits

Changeset 3:fa936e163bbd (2015-06-19)
Previous changeset 2:e0985bad7b92 (2015-06-19) Next changeset 4:22641bb68b91 (2015-06-29)
Commit message:
planemo upload for repository https://bitbucket.org/drosofff/gedtools/
modified:
test-data/blast.tab
test-data/input.fa
test-data/output.fa
test-data/output.tab
b
diff -r e0985bad7b92 -r fa936e163bbd test-data/blast.tab
--- a/test-data/blast.tab Fri Jun 19 12:53:52 2015 -0400
+++ b/test-data/blast.tab Fri Jun 19 13:17:32 2015 -0400
b
b'@@ -1,3940 +1,695 @@\n-Locus_1_Transcript_2/26_Confidence_0.051_Length_287\tgi|567840471|gb|AHC95553.1|_glycoprotein_precursor__Lassa_virus\t89.47\t19\t2\t0\t184\t128\t1\t19\t1e-04\t44.3\t526\n-Locus_1_Transcript_3/26_Confidence_0.103_Length_422\tgi|567840471|gb|AHC95553.1|_glycoprotein_precursor__Lassa_virus\t89.47\t19\t2\t0\t319\t263\t1\t19\t2e-04\t44.3\t526\n-Locus_1_Transcript_4/26_Confidence_0.051_Length_306\tgi|567840471|gb|AHC95553.1|_glycoprotein_precursor__Lassa_virus\t89.47\t19\t2\t0\t203\t147\t1\t19\t1e-04\t44.3\t526\n-Locus_1_Transcript_5/26_Confidence_0.077_Length_365\tgi|567840471|gb|AHC95553.1|_glycoprotein_precursor__Lassa_virus\t89.47\t19\t2\t0\t160\t104\t1\t19\t2e-04\t44.3\t526\n-Locus_13_Transcript_2/14_Confidence_0.133_Length_1984\tgi|13375377|gb|AAK20303.1|_unknown__Bombyx_mori_cypovirus_1\t26.29\t350\t247\t8\t949\t1983\t728\t1071\t3e-16\t88.2\t1239\n-Locus_13_Transcript_2/14_Confidence_0.133_Length_1984\tgi|261260467|gb|ACX54962.1|_unknown__Bombyx_mori_cypovirus_1\t25.46\t271\t193\t6\t1183\t1983\t806\t1071\t3e-15\t84.7\t1239\n-Locus_13_Transcript_2/14_Confidence_0.133_Length_1984\tgi|14794978|gb|AAK73522.1|_unknown__Lymantria_dispar_cypovirus_1\t26.84\t354\t240\t11\t949\t1983\t728\t1071\t3e-14\t82.0\t1237\n-Locus_13_Transcript_2/14_Confidence_0.133_Length_1984\tgi|14993636|ref|NP_149148.1|_hypothetical_protein_LdCPV1s3gp1__Cypovirus_1\t26.84\t354\t240\t11\t949\t1983\t728\t1071\t3e-14\t82.0\t1237\n-Locus_13_Transcript_2/14_Confidence_0.133_Length_1984\tgi|81962604|sp|Q91ID9.1|VP3_LDCPR_RecName:_Full_Putative_structural_protein_VP3\t26.84\t354\t240\t11\t949\t1983\t728\t1071\t3e-14\t82.0\t1237\n-Locus_13_Transcript_2/14_Confidence_0.133_Length_1984\tgi|27357177|gb|AAN86620.1|_VP2_protein__Dendrolimus_punctatus_cypovirus_1\t26.21\t351\t246\t9\t949\t1983\t728\t1071\t4e-14\t81.3\t1237\n-Locus_13_Transcript_2/14_Confidence_0.133_Length_1984\tgi|169313612|gb|ACA53381.1|_unknown__Choristoneura_occidentalis_cypovirus_16\t26.67\t345\t222\t12\t979\t1965\t734\t1063\t7e-13\t77.4\t1195\n-Locus_13_Transcript_2/14_Confidence_0.133_Length_1984\tgi|584614123|gb|AHJ14792.1|_VP2__Inachis_io_cypovirus_2\t25.24\t412\t264\t14\t763\t1923\t646\t1038\t1e-11\t73.6\t1191\n-Locus_13_Transcript_2/14_Confidence_0.133_Length_1984\tgi|586929343|ref|YP_009002587.1|_VP2__Inachis_io_cypovirus_2\t25.24\t412\t264\t14\t763\t1923\t646\t1038\t1e-11\t73.6\t1191\n-Locus_13_Transcript_2/14_Confidence_0.133_Length_1984\tgi|330687257|gb|AEC32487.1|_structural_protein__Spissistilus_festinus_reovirus\t29.07\t172\t100\t7\t1432\t1929\t971\t1126\t6e-07\t58.2\t1310\n-Locus_13_Transcript_2/14_Confidence_0.133_Length_1984\tgi|375298265|ref|YP_005255246.1|_P1_gene_product__Spissistilus_festinus_reovirus\t29.07\t172\t100\t7\t1432\t1929\t971\t1126\t6e-07\t58.2\t1310\n-Locus_13_Transcript_2/14_Confidence_0.133_Length_1984\tgi|727693970|gb|AIY60596.1|_minor_capsid_protein__Dendrolimus_punctatus_cypovirus_22\t28.93\t121\t78\t6\t1621\t1974\t1031\t1146\t1e-04\t50.4\t1312\n-Locus_13_Transcript_2/14_Confidence_0.133_Length_1984\tgi|731188599|ref|YP_009111326.1|_minor_capsid_protein__Dendrolimus_punctatus_cypovirus_22\t28.93\t121\t78\t6\t1621\t1974\t1031\t1146\t1e-04\t50.4\t1312\n-Locus_13_Transcript_3/14_Confidence_0.133_Length_1945\tgi|13375377|gb|AAK20303.1|_unknown__Bombyx_mori_cypovirus_1\t26.29\t350\t247\t8\t910\t1944\t728\t1071\t3e-16\t88.2\t1239\n-Locus_13_Transcript_3/14_Confidence_0.133_Length_1945\tgi|261260467|gb|ACX54962.1|_unknown__Bombyx_mori_cypovirus_1\t25.46\t271\t193\t6\t1144\t1944\t806\t1071\t3e-15\t84.7\t1239\n-Locus_13_Transcript_3/14_Confidence_0.133_Length_1945\tgi|14794978|gb|AAK73522.1|_unknown__Lymantria_dispar_cypovirus_1\t26.84\t354\t240\t11\t910\t1944\t728\t1071\t3e-14\t82.0\t1237\n-Locus_13_Transcript_3/14_Confidence_0.133_Length_1945\tgi|14993636|ref|NP_149148.1|_hypothetical_protein_LdCPV1s3gp1__Cypovirus_1\t26.84\t354\t240\t11\t910\t1944\t728\t1071\t3e-14\t82.0\t1237\n-Locus_13_Transcript_3/14_Confidence_0.133_Length_1945\tgi|81962604|sp|Q91ID9.1|VP3_LDCPR_RecName:_Full_Putative_structural_protein_VP3\t26.84\t354\t240\t11\t910\t1944\t728\t1071\t3e-14\t82.0\t1237\n-Locus_13_Transcript_3/14_Confidence_0.133_Length_1945\tgi|27357177|gb|AAN86620.1|_VP2_protein__Dendrolimus_punctatus_cypovirus_1\t26.21\t351\t246\t9\t910\t1944\t72'..b'|13195547|gb|AF329080.1|_Boolarra_virus_segment_RNA1_protein_A_and_B2_genes,_complete_cds\t85.90\t78\t11\t0\t51\t128\t2747\t2670\t5e-17\t91.5\t3096\n+Locus_81_Transcript_1/1_Confidence_1.000_Length_155\tgi|13195547|gb|AF329080.1|_Boolarra_virus_segment_RNA1_protein_A_and_B2_genes,_complete_cds\t87.23\t47\t6\t0\t1\t47\t2838\t2792\t3e-07\t59.0\t3096\n+Locus_81_Transcript_1/1_Confidence_1.000_Length_155\tgi|22681027|ref|NC_004142.1|_Boolarra_virus_RNA1,_complete_genome\t85.90\t78\t11\t0\t51\t128\t2747\t2670\t5e-17\t91.5\t3096\n+Locus_81_Transcript_1/1_Confidence_1.000_Length_155\tgi|22681027|ref|NC_004142.1|_Boolarra_virus_RNA1,_complete_genome\t87.23\t47\t6\t0\t1\t47\t2838\t2792\t3e-07\t59.0\t3096\n+Locus_81_Transcript_1/1_Confidence_1.000_Length_155\tgi|210673|gb|M33065.1|BBVRNA3_Black_beetle_virus_RNA3_proteins_B1_and_B2_genes,_complete_cds\t95.83\t48\t2\t0\t1\t48\t133\t86\t3e-13\t78.8\t389\n+Locus_81_Transcript_1/1_Confidence_1.000_Length_155\tgi|210673|gb|M33065.1|BBVRNA3_Black_beetle_virus_RNA3_proteins_B1_and_B2_genes,_complete_cds\t90.70\t43\t4\t0\t50\t92\t43\t1\t8e-08\t60.8\t389\n+Locus_82_Transcript_1/1_Confidence_1.000_Length_165\tgi|262225309|gb|GQ342965.1|_Drosophila_melanogaster_American_nodavirus_(ANV)_SW-2009a_segment_RNA1\t100.00\t165\t0\t0\t1\t165\t2851\t2687\t2e-79\t  298\t3107\n+Locus_82_Transcript_1/1_Confidence_1.000_Length_165\tgi|351066201|gb|JF461541.1|_Flock_house_virus_isolate_IP-VIA-022011_segment_RNA1,_complete_sequence\t98.18\t165\t3\t0\t1\t165\t2851\t2687\t4e-75\t  284\t3107\n+Locus_82_Transcript_1/1_Confidence_1.000_Length_165\tgi|152143028|gb|EF690537.1|_Flock_house_virus_isolate_TNCL_segment_RNA1_protein_A_mRNA,_complete_cd\t95.15\t165\t8\t0\t1\t165\t2851\t2687\t1e-68\t  262\t3107\n+Locus_82_Transcript_1/1_Confidence_1.000_Length_165\tgi|22681055|ref|NC_004146.1|_Flock_house_virus_RNA_1,_complete_sequence\t92.12\t165\t13\t0\t1\t165\t2851\t2687\t2e-61\t  239\t3107\n+Locus_82_Transcript_1/1_Confidence_1.000_Length_165\tgi|51014188|ref|NC_001411.2|_Black_beetle_virus,_complete_genome\t92.12\t165\t13\t0\t1\t165\t2850\t2686\t2e-61\t  239\t3106\n+Locus_82_Transcript_1/1_Confidence_1.000_Length_165\tgi|210673|gb|M33065.1|BBVRNA3_Black_beetle_virus_RNA3_proteins_B1_and_B2_genes,_complete_cds\t93.23\t133\t9\t0\t1\t133\t133\t1\t1e-49\t  199\t389\n+Locus_82_Transcript_1/1_Confidence_1.000_Length_165\tgi|13195547|gb|AF329080.1|_Boolarra_virus_segment_RNA1_protein_A_and_B2_genes,_complete_cds\t84.85\t165\t25\t0\t1\t165\t2838\t2674\t3e-45\t  185\t3096\n+Locus_82_Transcript_1/1_Confidence_1.000_Length_165\tgi|22681027|ref|NC_004142.1|_Boolarra_virus_RNA1,_complete_genome\t84.85\t165\t25\t0\t1\t165\t2838\t2674\t3e-45\t  185\t3096\n+Locus_83_Transcript_1/1_Confidence_1.000_Length_196\tgi|262225309|gb|GQ342965.1|_Drosophila_melanogaster_American_nodavirus_(ANV)_SW-2009a_segment_RNA1\t99.41\t169\t1\t0\t1\t169\t2851\t2683\t7e-80\t  300\t3107\n+Locus_83_Transcript_1/1_Confidence_1.000_Length_196\tgi|351066201|gb|JF461541.1|_Flock_house_virus_isolate_IP-VIA-022011_segment_RNA1,_complete_sequence\t97.63\t169\t4\t0\t1\t169\t2851\t2683\t4e-76\t  288\t3107\n+Locus_83_Transcript_1/1_Confidence_1.000_Length_196\tgi|152143028|gb|EF690537.1|_Flock_house_virus_isolate_TNCL_segment_RNA1_protein_A_mRNA,_complete_cd\t94.67\t169\t9\t0\t1\t169\t2851\t2683\t5e-69\t  264\t3107\n+Locus_83_Transcript_1/1_Confidence_1.000_Length_196\tgi|22681055|ref|NC_004146.1|_Flock_house_virus_RNA_1,_complete_sequence\t91.72\t169\t14\t0\t1\t169\t2851\t2683\t2e-62\t  242\t3107\n+Locus_83_Transcript_1/1_Confidence_1.000_Length_196\tgi|51014188|ref|NC_001411.2|_Black_beetle_virus,_complete_genome\t91.72\t169\t14\t0\t1\t169\t2850\t2682\t2e-62\t  242\t3106\n+Locus_83_Transcript_1/1_Confidence_1.000_Length_196\tgi|210673|gb|M33065.1|BBVRNA3_Black_beetle_virus_RNA3_proteins_B1_and_B2_genes,_complete_cds\t93.23\t133\t9\t0\t1\t133\t133\t1\t2e-49\t  199\t389\n+Locus_83_Transcript_1/1_Confidence_1.000_Length_196\tgi|13195547|gb|AF329080.1|_Boolarra_virus_segment_RNA1_protein_A_and_B2_genes,_complete_cds\t84.62\t169\t26\t0\t1\t169\t2838\t2670\t3e-46\t  188\t3096\n+Locus_83_Transcript_1/1_Confidence_1.000_Length_196\tgi|22681027|ref|NC_004142.1|_Boolarra_virus_RNA1,_complete_genome\t84.62\t169\t26\t0\t1\t169\t2838\t2670\t3e-46\t  188\t3096\n'
b
diff -r e0985bad7b92 -r fa936e163bbd test-data/input.fa
--- a/test-data/input.fa Fri Jun 19 12:53:52 2015 -0400
+++ b/test-data/input.fa Fri Jun 19 13:17:32 2015 -0400
b
b'@@ -1,6849 +1,1712 @@\n->Locus_1_Transcript_1/26_Confidence_0.051_Length_148\n-CTGGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAA\n-AAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGA\n-ATCCCCGCCGCGCGTCGCGGCGTGGGAA\n->Locus_1_Transcript_2/26_Confidence_0.051_Length_287\n-CCCCGCCGCGCGTCGCGGCGTGGGAAATGTGGCGTACGGAAGACCCACTCCCCGGCGCCG\n-CTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGT\n-AGCGGCCCCCGGCGCGCCGGGCTCGGGTCTTCCCGGAGTCGGGTTGCTTGGGAATGCAGC\n-CCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATACCGGCACGAGACCGATAGTCAACA\n-AGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAGTTCAAG\n->Locus_1_Transcript_3/26_Confidence_0.103_Length_422\n-CAGTCCGACGATCCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTA\n-GTCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAG\n-AGCCCAGCGCCGAATCCCCGCCGCGCGTCGCGGCGTGGGAAATGTGGCGTACGGAAGACC\n-CACTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAGCCCGTGGA\n-CGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCTCGGGTCTTCCCGGAGTCGGGTT\n-GCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATACCGGCACGA\n-GACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAGTTCA\n-AG\n->Locus_1_Transcript_4/26_Confidence_0.051_Length_306\n-CAGTCCGACGATCAGTTCTACAGTCCGACGATCGCGGCATTCTAAATGTGGCGTACGGAA\n-GACCCACTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAGCCCG\n-TGGACGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCTCGGGTCTTCCCGGAGTCG\n-GGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATACCGGC\n-ACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAG\n-TTCAAG\n->Locus_1_Transcript_5/26_Confidence_0.077_Length_365\n-AAATGTGGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCT\n-GATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCTC\n-GGGTCTTCCCGGAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATC\n-TAAGGCTAAATACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAA\n-GAACTTTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACGGGTGGGGTC\n-CGCGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCGTCCGGCCGTGCCGGTGGTCCC\n-GGCGG\n->Locus_1_Transcript_6/26_Confidence_0.154_Length_930\n-CAGTCCGACGATCCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTA\n-GTCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAG\n-AGCCCAGCGCCGAATCCCCGCCGCGCGTCGCGGCGTGGGAAATGTGGCGTACGGAAGACC\n-CACTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAGCCCGTGGA\n-CGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCTCGGGTCTTCCCGGAGTCGGGTT\n-GCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATACCGGCACGA\n-GACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAGTTCA\n-AGAGGGCGTGAAACCGTTAAGAGGTAAACGGGTGGGGTCCGCGCAGTCCGCCCGGAGGAT\n-TCAACCCGGCGGCGCGCGTCCGGCCGTGCCGGTGGTCCCGGCGGATCTTTCCCGCTCCCC\n-GTTCCTCCCGACCCCTCCACCCGCGCGTCGTTCCCCTCTTCCTCCCCGCGTCCGGCGCTC\n-CGGCGGCGGGCGCGGGGGGTGGTGTGGTGGTGGCGCGCGGGCGGGGCCGGGGGTGGGGTC\n-GGCGGGGGACCGCCCCCCGGCCGGCGACCGGCCGCCGCCGGGCGCACTTCCACCGTGGCG\n-GTGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCGGTGGGGAAGGTGGCTCGGGGG\n-GGGCGGCGCGTCTCAGGGCGCGCCGAACCACCTCACCCCGAGTGTTACAGCCCTCCGGCC\n-GCAGCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGATACCCGTCGCCGCGCTCTCCCTC\n-TCCCCCCGTCCGCCTCCCGGGCGGCGTGGG\n->Locus_1_Transcript_7/26_Confidence_0.103_Length_536\n-TCAAAGAACTTTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACGGGTG\n-GGGTCCGCGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCGTCCGGCCGTGCCGGTG\n-GTCCCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTCCACCCGCGCGTCGTTCC\n-CCTCTTCCTCCCCGCGTCCGGCGCTCCGGCGGCGGGCGCGGGGGGTGGTGTGGTGGTGGC\n-GCGCGGGCGGGGCCGGGGGTGGGGTCGGCGGGGGACCGCCCCCCGGCCGGCGACCGGCCG\n-CCGCCGGGCGCACTTCCACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGGAAG\n-GCCCGGTGGGGAAGGTGGCTCGGGGGGGGCGGCGCGTCTCAGGGCGCGCCGAACCACCTC\n-ACCCCGAGTGTTACAGCCCTCCGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAAGCC\n-AGATACCCGTCGCCGCGCTCTCCCTCTCCCCCCGTCCGCCTCCCGGGCGGCGTGGG\n->Locus_1_Transcript_8/26_Confidence_0.103_Length_254\n-GGGCGTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCTCCCACCCCCCT\n-CCGTCGCCTCTCTCGGGGCCCGGTGGGGGGCGGGGCGGACTGTCCCCAGTGCGCCCCGGG\n-CGTCGTCGCGCCGTCGGGTCCCGGGGGGACCGTCGGTCACGCGTCTCCCGACGAAGCCGA\n-GCGCACGGGGTCGGCGGCGATGTCGGCTACCCACCCGACCCGTCTTGTAACACGGACCAA\n-GGAGTCTAACGCGT\n->Locus_1_Transcript_9/26_Confidence_0.077_Length_252\n-GAACACGGACCAAGGAGTCTAACGCGTGCGCGAGTCAGGGGCTCGTCCGAAAGCCGCCGT\n-GGCGCAATGAAGGTGAAGGGCCCCGCCCGGGGGCCCGAGGTGGGATCCCGAGGCCTCTCC\n-'..b'GGCGTCTTAGAAACGCTTA\n+>Locus_67_Transcript_1/2_Confidence_0.333_Length_210\n+TGCAACAACTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACT\n+TGCCCTCCAATTGGTCCTTGTTAAATGCGCTGGATGGTGGTGGTTTTTGGCAAAACACAG\n+TGGTGTCTCGATAGCGGGGCTACCAGTCACATGTGCTGTGACAGAGGTGTTTTTACTGAG\n+TATGAAGAGCACACTGAAAAAATTAGTCTT\n+>Locus_67_Transcript_2/2_Confidence_0.333_Length_155\n+AGCGACACAAAAACAATGCTCCTTGTTAAATGCGCTGGATGGTGGTGGTTTTTGGCAAAA\n+CACAGTGGTGTCTCGATAGCGGGGCTACCAGTCACATGTGCTGTGACAGAGGTGTTTTTA\n+CTGAGTATGAAGAGCACACTGAAAAAATTAGTCTT\n+>Locus_68_Transcript_1/1_Confidence_0.000_Length_211\n+TGAAAACTCTTTTAAACCCAGCACAATTTATCTCAGACATTCCTGATGATATAATGATCC\n+GACACGTAAACAGGGCCCAGACCATCACCTACAACTTGAAGTCAGGGTCCTCTGGCACCG\n+GCCTGATCGTGGTCTATCCAAACACCCCGTCGAGTATTAGCGGCTTCCATTACATATGGG\n+ATTCCGCTACCTCGAATTGGGTGTTTGATCA\n+>Locus_69_Transcript_1/1_Confidence_0.000_Length_164\n+CCAGAGGATTGGATGTTATTGACAGGATCCTATCGTAAGAGTAGTCAGACACTTCACTCA\n+AGGTCCCTTGGAACCAGACTGCATTGAATGTTCCATTCAGTGCATAAACACCCGCAGGTA\n+AGGTGCTGGACTTAATGCTTAGCGAGCCTGAAATCAGTCTGCCA\n+>Locus_70_Transcript_1/1_Confidence_0.000_Length_147\n+AAAAGTTAATTTTGTTAGTAAGAAAATTTGATAAAACTTACAGGAAAGGCGATAAAACTT\n+TCCTTTTAACAAGGTTCGATTAGTACACACGAGAAGAACCAAGAAGAAACTCGAGTGACA\n+TTAATGACTACAATAAGATGTTAGTAA\n+>Locus_71_Transcript_1/2_Confidence_0.333_Length_170\n+GATTAATGAAAACATCTTTGGCAAATGCTTTCGCAGTCGGACGTCTCGCTACGGTCCAAG\n+AATTTCACCTCTCGCGTCGTAATACTAATGCCCCCAAACTGCTTCTATTAATCATTACCT\n+CTTGATCTGAAAACCAATGAAAGCAGAACAGAGGTCTTATTTCATTATCC\n+>Locus_71_Transcript_2/2_Confidence_0.333_Length_106\n+ACACCTCTCGCGTCGTAATACTAATGCCCCCAAACTGCTTCTATTAATCATTACCTCTTG\n+ATCTGAAAACCAATGAAAGCAGAACAGAGGTCTTATTTCATTATCC\n+>Locus_72_Transcript_1/1_Confidence_0.000_Length_108\n+AAATGATCTCATCTCTGTATTCTGGCCGGAATGCTTGAACCATCGCCTTTTGAGCGATAT\n+TTCGTTGCATCCAGCCAGAAACCCGGCCATCAAGGTTGGAAAAATCCG\n+>Locus_73_Transcript_1/1_Confidence_0.000_Length_164\n+TCGGATAATATCCGGCTTTCCTGACATCCTTTTCATCCTGAAGGTCTCCAGATACACATT\n+AGCGTACTCGGATATCGTTCTACATGCCGAGCATAATCAACATTGGTATTATCCTGGAAG\n+GAACCCAACTGAGATCGCCGATGGGGTTTGTGAATTTGTCAGTG\n+>Locus_74_Transcript_1/2_Confidence_0.333_Length_232\n+ATCATATCCAACAGCTCTTCAGCTCTGCTCCTCGTTATCTTCGGAAATGGTTGCACATGG\n+ATTTTTGCCAGCATGCACGTCTTGCATACTGCGTCTGGTTTGAAAACGACCTTTTCAACA\n+CCGTACACCATCCTCTTCCTCACCATCTCCTGTAGGCTGCTTGTATTCAAATGGCCATAC\n+CTTTTATGCCATAGTGAACCATCAGCATCAACGGCCGCAAAACAACTGTTAT\n+>Locus_74_Transcript_2/2_Confidence_0.333_Length_109\n+CATTCGCTCTTCCTCCTCACCATCTCCTGTAGGCTGCTTGTATTCAAATGGCCATACCTT\n+TTATGCCATAGTGAACCATCAGCATCAACGGCCGCAAAACAACTGTTAT\n+>Locus_76_Transcript_1/1_Confidence_0.500_Length_196\n+TCAGTTTCAGCTTTGTTTTTCAGCCTGCTGCTACCATTCAGGTTCCACCTCCTTTTCAGT\n+TTAAAGTGGGTTTCTCGGCCAGAGTTGGGCAATTCCATTACTCTATTAGGGGGAAAAAAT\n+GGTAATTTGCTGCTCGATTATGACGAAGTCATTTGATCCGCTTCACATGTGACGTCGTCT\n+TTTTGTTGGGCCTGTC\n+>Locus_78_Transcript_1/1_Confidence_1.000_Length_154\n+AACGTGCGCAGGGACCTCATACCTCGAAGGAAGGGCCCCCCGAGGAGGCAAATCAGCACT\n+CGAAGAACGCCTCCGAAAGCTGGAGCTCAGCCCCCCACCCGCTAAACCGTAGGTGTCTCC\n+TAGGAGCACCCACACACGTTCTAGCCCGAAAGGG\n+>Locus_79_Transcript_1/1_Confidence_1.000_Length_154\n+AACGTGCGCAGGGACCTCATACCTCGAAGGAAGGGCCCCCCGAGGAGGCAAATCAGCACT\n+CGAAGAACGCCTCCGAAAGCTGGAGCTCAGCCCCCCACCCGCTAAACCGTAGCTGACTCC\n+TAGGAGCACCTACACCCGTTCTAGCCCGAAAGGG\n+>Locus_80_Transcript_1/1_Confidence_1.000_Length_101\n+GAGGTCCCTGCGCACGTTGTTCGGTGCGTCCTGATAGCTCATTCCCATTGCTGCTTCCGC\n+CGCCGTTTGAATGCGGTCGGGAAGTTCCTGGATTAGCGCAA\n+>Locus_81_Transcript_1/1_Confidence_1.000_Length_155\n+GAGGTCCCTGCGCACGTTGTTCGGTGCGTCCTGATAGCTCATTCCCATTGATTAGCGCGA\n+GTTTGCTTGGCATCGTTAAGCTTAGGTAACGATTCATCCACGGAGCCCGGCATAACGCCG\n+TCTTAATCTTCTCCCAGCATGATCCGTGTAACTCG\n+>Locus_82_Transcript_1/1_Confidence_1.000_Length_165\n+GAGGTCCCTGCGCACGTTGTTCGGTGCGTCCTGATAGCTCATTCCCATTGCTGCTTCCGC\n+CGCCGTTTGAATGCGGTCGGGAAGTTCCTGGATTAGCGCGAGTTTGCTTGGCATCGTTAA\n+GCTTAGGTAACGATTCATCCACGGAGCCCGGCATAACGCCGTCTT\n+>Locus_83_Transcript_1/1_Confidence_1.000_Length_196\n+GAGGTCCCTGCGCACGTTGTTCGGTGCGTCCTGATAGCTCATTCCCATTGCTGCTTCCGC\n+CGCCGTTTGAATGCGGTCGGGAAGTTCCTGGATTAGCGCGAGTTTGCTTGGCATCGTTAA\n+GCTTAGGTAACGATTCATCCACGGAGCCCGGCATAACGCCGTCTTAATCTTCTCCCAGCA\n+TGATCCGTGTAACTCG\n'
b
diff -r e0985bad7b92 -r fa936e163bbd test-data/output.fa
--- a/test-data/output.fa Fri Jun 19 12:53:52 2015 -0400
+++ b/test-data/output.fa Fri Jun 19 13:17:32 2015 -0400
b
b'@@ -1,56346 +1,5087 @@\n->gi|81971654|sp|Q9IJX4.1|POLN_CRPVC_RecName:_Full_Replicase_polyprotein;_Contains:_RecName:_Full_Pro--Locus_65_Transcript_1/2_Confidence_0.667_Length_1344_hit1_IdMatch=43.46,AligLength=451,E-val=2e-122\n-TAGATAAGGTTTGCTCATTTCTTGAGGATGCTTTACCAGGTATGGTCGAGCACGTTACGC\n-TCGTAGCACAAAATACATCCGCGTCAGCCAAGGTGTTATCTGACGAGTTGATCAAATCAA\n-TGCTTTGCATTGTTTTGATTTGCTTGTTGATTGAAACCAAGTTCTATAAGACCGCTTTCG\n-CGGTACTTATAGTGGTTGCTCTACGTGTTTTCGGGTACAGTGAGCAAATAATTGAGACAG\n-CTATGGACATGTATCGCGTAATTAGGGCTCCAAAGGCTCAAGGTAATATGGAAGATGTCG\n-TTTTCCATCCGTGGTTGAACACGTGTGGAAAGTTGATTTTCCTACTTATCGCTGTCCTGT\n-GTCTCAAGAAATTACCAGGAAAGAACGACGTAGACACTTTCATGCGCAGGCTCGACAGCT\n-TACCCAAAGCTGTTAAGGGTGCGACACAACTACATGAATGGGTGTCAAAATACTTCGATC\n-TCTCTTTGGATCACGTCAAGGCGATGATTGTTGGTAAATCTTGTGCCGAAATGAAGAAGG\n-CTGAATCATCAAGCGCCAAAGTTTTGGCTTGGGCCGCTAGAGTTCAAGATTTCGTCAGAT\n-TGGAACAACGAAGTAAAATCGATAGTGATATCGCTGTCGCCAACGAGGCTGAAGCCTTGT\n-ATCACACTGGATTGCAATTTGCAGGAGACACTCTGTTACCTCCAGAATTGCACAAGGTCG\n-TGAACAGTGCGCTAAGACCAGCCCGCGATATATATGAGTACGTCACCCGCTCCCCAATAA\n-AAGGAGGGAGTCGTAAGATGAGACCCTTGATGATTTGGCTAGCTGGCCAGTCAGGAATTG\n-GGAAAACCTCTATGGTGGATCCTCTATGTATCGATTTGCTTCGAGCAATGGGTTATGTGG\n-GACCTGAACATCTCCACTCGTTGGTGTATGGCCGCCAAGTTGAGACGGAGTACTGGGATG\n-GTTACAAAGCCCACAAGATAGTGATCTATGATGATGCTTTTCAGCTGAAAGATGATGCTG\n-TGAACAGGAATTTGGAGGTATTTGAGGTTATACGTTCTTGCAACACGTATCCTCAACACC\n-TTCATATGGCTTGTCTCTCGGATAAAAACACTTTTTCAGTAGCGGAAGTGTACATCTACA\n-CTACCAACGAAATGAATGTCAAACTTGAGTCGCTGACTCATGAACAAGCATTCTACAACC\n-GCATGAGTGAAAACGCGTTCACTGTGCGTCCAAAAGAGGCTTATCGTCTAGTCGAAGAAG\n-GATCAACCGGCAATAAGCAGTATCGTTTGGACAAAACGAAAACCAAAGGAGCTATCGATC\n-TCGATGTGTACGAATTCGTGCGC\n->gi|81971654|sp|Q9IJX4.1|POLN_CRPVC_RecName:_Full_Replicase_polyprotein;_Contains:_RecName:_Full_Pro--Locus_63_Transcript_1/2_Confidence_0.333_Length_1607_hit1_IdMatch=52.99,AligLength=536,E-val=0.0\n-CTAGAATCACAGCTCAGATGAGTTTTGAGGCACCGAAGGACGCAATTGAAGGACCGTGTC\n-AAACCCCGGAAGGATTGTTCGCCCCTATTGGCAAAGCGCCGATAGGCGTAGGGATGTCCA\n-CCAAGACGGCTATACGACCTTCACGCTTGTATGGAAGAATAACTAAACCGACAACTGCAC\n-CATCATACTTGGGTAAAGACGCGCTTTATCGTGGATTGACCAAGTGTGGTGTTCGCACAG\n-TTAATATTCAACCAGAATACATAGACGCAGCGGCGAATGACGTCGCACGCTATGTGTTAA\n-ACCAGCATGTTGGTCACGTGGATAGGGAACGATACACACGTATATTGTCGTACGAGGAGG\n-CTGTTAAGGGCGTGCCGTACGATGATTTCATGAAGTCAGTGACTCGAGTCACTTCCCCTG\n-GTTACCCCTATTGCTTGGATACTGGAAACATGCCAGGGAAAAGCAAATGGATGGGGCTCG\n-AACAAGATTTCGATATGACAAGTCCAGCTGCTTTGGCTTTGAGGAAAGATGTTGAAAGTT\n-TGTTGGAAGATTGCAAAAATGGCTTAGTCCGTGATGTGGTGTTTGTCGACACTCTCAAGG\n-ATGAAAGGCGCGAGCTGATAAAGGTGGAAGCAAAGAAGACTCGAGTCTTTTCTGCTGGAC\n-CACAGCATTTTGTAATAGCTTTCCGGCAATACTTTCTTCCATTCTCTGCCTGGGTCATGC\n-ATAACAGAATCGAAAACGAAGTAGCCGTTGGAACAAACCCCTTCTCAATGGATTGGCACA\n-ACATTGCTGTGCGTATGCGTAGTAAAGGGAGACACATTATTGCTGGAGATTTTAGCAATT\n-TTGATGGATCCCTCAACGCCCAAGTTCTCTGGACAATATTTTGGAAGATATTTGTCCCGT\n-GGCTTAATGATATTGAACCACTTGGTACACCCAAGAATGAGGAGAATCTGCGGGTCTGCA\n-CGAGTCTATGGACGCACTTGGTGCACTCCGTGCACATTTGTGGAGATAACTTGTACATGT\n-GGACACATTCTCAACCATCGGGCAATCCCTTCACGGTGATAATCAATAGTTTGTATAACT\n-CAGTTATCATGCGTGTCGTGTGGCAATACATAATGGCGAAAGAAGAACCTAAGTTACGCA\n-CAATGAACCATTTCAATCAACATGTTGCTATGGTTTCATATGGTGATGACAATCTACTTA\n-ACATCTCGGAAGGGGTAATTGATATCTTCAACCAACTTACCATCTCGGAAGCCATGCGTT\n-GGATAGGACACGAATACACAGATGAAACGAAAACAGGCGAGGCTGCGCCCTATCGGACAT\n-TGGAAGAAGTCCGTTTCCTTAAAAGAGGGTTCAGAATGGATCACCTCTTGTGTCGGTGGG\n-TAGCTCCTTTGAAGAAGGATGTCATCTACGAAATGCTTAATTGGACGCGCAAAGGGATTA\n-ACCCAGATGATGTGACGATGATGATCATTGATACAGCATTTAGGGAGATCTCTTATCACG\n-GAAGGGAAGCTTTCGAGAAGCTGCGAGGGCAGATACTTGAGCAGCGGGATGTGTTGGTTG\n-AATATCCTCAA\n->gi|81971654|sp|Q9IJX4.1|POLN_CRPVC_RecName:_Full_Replicase_polyprotein;_Contains:_RecName:_Full_Pro--Locus_50_Transcript_1/1_Confidence_0.000_Length_1442_hit1_IdMatch=24.95,AligLength=537,E-val=8e-47\n-GAATTCGTGCGCATGCAAAGAATAAATGACCACCCTTCGGGTTGGAAAGCTACGGATGAA\n-GTATATGGCTATGCAGAGTTCTCGAAACTAATGTGTGCTGAATGGAAGAGAAGGAAGACA\n-GAACATCAGAATACTGTTGACTTCCTTAAGAAGTATGCAGAGCGACCCTTCGAGACCAAC\n-CCCGGACCAGTGGAGGATATCCCAATAAGACACGATGATGTCGAGCAGGGGGTAGAAGCG\n-CAGATGGGTCGAGATGCAGATTGGTTTAACAATGACATAGCGGAACGTATAGCGCGTGGA\n-CAGGATATTACTGATATCTTGTATGAGTATGCTGAAGATGACGAGT'..b'TGCGGATACCGCTCTTA\n-AAACTGCCGATGCGGGTTACCTGACTCGTCGTTTGGTAGACGTTGCGCAGGAC\n-\n->gi|347601122|gb|AEP15608.1|_DNA-directed_RNA_polymerase_subunit_beta__Emiliania_huxleyi_virus_207--Locus_295_Transcript_1/1_Confidence_0.000_Length_115_hit1_IdMatch=50.0,AligLength=36,E-val=8e-05\n-TCTTGGAATACTTTATCTCAACCCACGGTGCTCGTAAAGGTCTTGCGGATACCGCTCTTA\n-AAACTGCCGATGCGGGTTACCTGACTCGTCGTTTGGTAGACGTTGCGCAGGAC\n-\n->gi|448932900|gb|AGE56458.1|_calcium-transporting_ATPase,_plasma_membrane-type__Paramecium_bursaria--Locus_285_Transcript_1/1_Confidence_0.000_Length_112_hit1_IdMatch=55.56,AligLength=36,E-val=3e-04\n-TATTAAAATCGAAGGGACATACTGTAGGTTTTATGGGAGACGGAATTAACGATGCAGCAG\n-CGATTAAAGAAGCTGATGTCGGAATTTCTGTAGACACCGGAGCAGATATT\n+>gi|367057603|gb|JN585293.1|_Infectious_bursal_disease_virus_isolate_CAHFS_K669_segment_A,_complete_--Locus_69_Transcript_1/1_Confidence_0.000_Length_164_hit1_IdMatch=73.17,AligLength=82,E-val=2e-04\n+TCAGACACTTCACTCAAGGTCCCTTGGAACCAGACTGCATTGAATGTTCCATTCAGTGCA\n+TAAACACCCGCAGGTAAGGTGCTGGAC\n \n->gi|347481891|gb|AEO97877.1|_DNA-directed_RNA_polymerase_subunit_beta__Emiliania_huxleyi_virus_84--Locus_295_Transcript_1/1_Confidence_0.000_Length_115_hit1_IdMatch=50.0,AligLength=36,E-val=8e-05\n-TCTTGGAATACTTTATCTCAACCCACGGTGCTCGTAAAGGTCTTGCGGATACCGCTCTTA\n-AAACTGCCGATGCGGGTTACCTGACTCGTCGTTTGGTAGACGTTGCGCAGGAC\n-\n->gi|557952511|gb|AHA46305.1|_DNA-directed_RNA_polymerase_subunit_alpha__Insectomime_virus--Locus_295_Transcript_1/1_Confidence_0.000_Length_115_hit1_IdMatch=54.84,AligLength=31,E-val=3e-04\n-CATCTTGGAATACTTTATCTCAACCCACGGTGCTCGTAAAGGTCTTGCGGATACCGCTCT\n-TAAAACTGCCGATGCGGGTTACCTGACTCGTCGTTTG\n-\n->gi|326784736|gb|AEA06870.1|_DNA-directed_RNA_polymerase_subunit_alpha__Lausannevirus--Locus_295_Transcript_1/1_Confidence_0.000_Length_115_hit1_IdMatch=58.06,AligLength=31,E-val=7e-05\n-CATCTTGGAATACTTTATCTCAACCCACGGTGCTCGTAAAGGTCTTGCGGATACCGCTCT\n-TAAAACTGCCGATGCGGGTTACCTGACTCGTCGTTTG\n-\n->gi|327409562|ref|YP_004346982.1|_DNA-directed_RNA_polymerase_subunit_alpha__Lausannevirus--Locus_295_Transcript_1/1_Confidence_0.000_Length_115_hit1_IdMatch=58.06,AligLength=31,E-val=7e-05\n-CATCTTGGAATACTTTATCTCAACCCACGGTGCTCGTAAAGGTCTTGCGGATACCGCTCT\n-TAAAACTGCCGATGCGGGTTACCTGACTCGTCGTTTG\n+>gi|395863918|gb|JN982269.1|_Infectious_bursal_disease_virus_isolate_SC12_VP2_protein_gene,_complete--Locus_69_Transcript_1/1_Confidence_0.000_Length_164_hit1_IdMatch=73.17,AligLength=82,E-val=2e-04\n+TCAGACACTTCACTCAAGGTCCCTTGGAACCAGACTGCATTGAATGTTCCATTCAGTGCA\n+TAAACACCCGCAGGTAAGGTGCTGGAC\n \n->gi|566082702|gb|AHC55112.1|_putative_DNA-directed_RNA_polymerase_subunit_Rpb1__Tunisvirus_fontaine2--Locus_295_Transcript_1/1_Confidence_0.000_Length_115_hit1_IdMatch=54.84,AligLength=31,E-val=3e-04\n-CATCTTGGAATACTTTATCTCAACCCACGGTGCTCGTAAAGGTCTTGCGGATACCGCTCT\n-TAAAACTGCCGATGCGGGTTACCTGACTCGTCGTTTG\n+>gi|24306007|gb|AF322444.1|_Infectious_bursal_disease_virus_segment_A_VP5_protein_and_polyprotein_ge--Locus_69_Transcript_1/1_Confidence_0.000_Length_164_hit1_IdMatch=73.17,AligLength=82,E-val=2e-04\n+TCAGACACTTCACTCAAGGTCCCTTGGAACCAGACTGCATTGAATGTTCCATTCAGTGCA\n+TAAACACCCGCAGGTAAGGTGCTGGAC\n \n->gi|567840471|gb|AHC95553.1|_glycoprotein_precursor__Lassa_virus--Locus_1_Transcript_5/26_Confidence_0.077_Length_365_hit1_IdMatch=89.47,AligLength=19,E-val=2e-04\n-TTGGGCTGCATTCCCAAGCAACCCGACTCCGGGAAGACCCGAGCCCGGCGCGCCGGGGGC\n-CG\n->gi|567840471|gb|AHC95553.1|_glycoprotein_precursor__Lassa_virus--Locus_1_Transcript_2/26_Confidence_0.051_Length_287_hit1_IdMatch=89.47,AligLength=19,E-val=1e-04\n-TTGGGCTGCATTCCCAAGCAACCCGACTCCGGGAAGACCCGAGCCCGGCGCGCCGGGGGC\n-CG\n->gi|567840471|gb|AHC95553.1|_glycoprotein_precursor__Lassa_virus--Locus_1_Transcript_3/26_Confidence_0.103_Length_422_hit1_IdMatch=89.47,AligLength=19,E-val=2e-04\n-TTGGGCTGCATTCCCAAGCAACCCGACTCCGGGAAGACCCGAGCCCGGCGCGCCGGGGGC\n-CG\n->gi|567840471|gb|AHC95553.1|_glycoprotein_precursor__Lassa_virus--Locus_1_Transcript_4/26_Confidence_0.051_Length_306_hit1_IdMatch=89.47,AligLength=19,E-val=1e-04\n-TTGGGCTGCATTCCCAAGCAACCCGACTCCGGGAAGACCCGAGCCCGGCGCGCCGGGGGC\n-CG\n-\n'
b
diff -r e0985bad7b92 -r fa936e163bbd test-data/output.tab
--- a/test-data/output.tab Fri Jun 19 12:53:52 2015 -0400
+++ b/test-data/output.tab Fri Jun 19 13:17:32 2015 -0400
b
b'@@ -1,16010 +1,1810 @@\n # SeqId\t%Identity\tAlignLength\tStartSubject\tEndSubject\t%QueryHitCov\tE-value\tBitScore\n \n #\n-# gi|81971654|sp|Q9IJX4.1|POLN_CRPVC_RecName:_Full_Replicase_polyprotein;_Contains:_RecName:_Full_Pro\n-# Suject Length: 1771\n-# Total Subject Coverage: 1499\n-# Relative Subject Coverage: 0.84641445511\n-# Maximum Bit Score: 581.0\n-# Median Bit Score: 389.0\n-Locus_63_Transcript_2/2_Confidence_0.333_Length_343\t50.86\t116\t1635\t1750\t99.4\t6e-30\t119.0\n-Locus_65_Transcript_2/2_Confidence_0.333_Length_1324\t43.5\t446\t242\t684\t99.8\t1e-119\t389.0\n-Locus_65_Transcript_1/2_Confidence_0.667_Length_1344\t43.46\t451\t237\t684\t99.5\t2e-122\t398.0\n-Locus_50_Transcript_1/1_Confidence_0.000_Length_1442\t24.95\t537\t681\t1201\t99.8\t8e-47\t181.0\n-Locus_63_Transcript_1/2_Confidence_0.333_Length_1607\t52.99\t536\t1217\t1750\t97.4\t0.0\t581.0\n-#\n-# gi|21321709|ref|NP_647481.1|_nonstructural_polyprotein__Cricket_paralysis_virus\n-# Suject Length: 1771\n-# Total Subject Coverage: 1499\n-# Relative Subject Coverage: 0.84641445511\n-# Maximum Bit Score: 581.0\n-# Median Bit Score: 389.0\n-Locus_63_Transcript_2/2_Confidence_0.333_Length_343\t50.86\t116\t1635\t1750\t99.4\t6e-30\t119.0\n-Locus_65_Transcript_2/2_Confidence_0.333_Length_1324\t43.5\t446\t242\t684\t99.8\t1e-119\t389.0\n-Locus_65_Transcript_1/2_Confidence_0.667_Length_1344\t43.46\t451\t237\t684\t99.5\t2e-122\t398.0\n-Locus_50_Transcript_1/1_Confidence_0.000_Length_1442\t24.95\t537\t681\t1201\t99.8\t8e-47\t181.0\n-Locus_63_Transcript_1/2_Confidence_0.333_Length_1607\t52.99\t536\t1217\t1750\t97.4\t0.0\t581.0\n-#\n-# gi|8895507|gb|AAF80998.1|_nonstructural_polyprotein__cricket_paralysis_virus\n-# Suject Length: 1771\n-# Total Subject Coverage: 1499\n-# Relative Subject Coverage: 0.84641445511\n-# Maximum Bit Score: 581.0\n-# Median Bit Score: 389.0\n-Locus_63_Transcript_2/2_Confidence_0.333_Length_343\t50.86\t116\t1635\t1750\t99.4\t6e-30\t119.0\n-Locus_65_Transcript_2/2_Confidence_0.333_Length_1324\t43.5\t446\t242\t684\t99.8\t1e-119\t389.0\n-Locus_65_Transcript_1/2_Confidence_0.667_Length_1344\t43.46\t451\t237\t684\t99.5\t2e-122\t398.0\n-Locus_50_Transcript_1/1_Confidence_0.000_Length_1442\t24.95\t537\t681\t1201\t99.8\t8e-47\t181.0\n-Locus_63_Transcript_1/2_Confidence_0.333_Length_1607\t52.99\t536\t1217\t1750\t97.4\t0.0\t581.0\n-#\n-# gi|798547303|gb|AKA63265.1|_nonstructural_polyprotein__Cricket_paralysis_virus\n-# Suject Length: 1771\n-# Total Subject Coverage: 1499\n-# Relative Subject Coverage: 0.84641445511\n-# Maximum Bit Score: 608.0\n-# Median Bit Score: 392.0\n-Locus_63_Transcript_2/2_Confidence_0.333_Length_343\t53.45\t116\t1635\t1750\t99.4\t4e-32\t126.0\n-Locus_65_Transcript_2/2_Confidence_0.333_Length_1324\t43.72\t446\t242\t684\t99.8\t1e-120\t392.0\n-Locus_65_Transcript_1/2_Confidence_0.667_Length_1344\t43.68\t451\t237\t684\t99.5\t2e-123\t400.0\n-Locus_50_Transcript_1/1_Confidence_0.000_Length_1442\t25.51\t537\t681\t1201\t99.8\t1e-49\t190.0\n-Locus_63_Transcript_1/2_Confidence_0.333_Length_1607\t54.29\t536\t1217\t1750\t97.4\t0.0\t608.0\n-#\n-# gi|798547250|gb|AKA63263.1|_nonstructural_polyprotein__Cricket_paralysis_virus\n-# Suject Length: 1771\n-# Total Subject Coverage: 1499\n-# Relative Subject Coverage: 0.84641445511\n-# Maximum Bit Score: 608.0\n-# Median Bit Score: 392.0\n-Locus_63_Transcript_2/2_Confidence_0.333_Length_343\t53.45\t116\t1635\t1750\t99.4\t4e-32\t126.0\n-Locus_65_Transcript_2/2_Confidence_0.333_Length_1324\t43.72\t446\t242\t684\t99.8\t1e-120\t392.0\n-Locus_65_Transcript_1/2_Confidence_0.667_Length_1344\t43.68\t451\t237\t684\t99.5\t2e-123\t400.0\n-Locus_50_Transcript_1/1_Confidence_0.000_Length_1442\t25.51\t537\t681\t1201\t99.8\t1e-49\t190.0\n-Locus_63_Transcript_1/2_Confidence_0.333_Length_1607\t54.29\t536\t1217\t1750\t97.4\t0.0\t608.0\n-#\n-# gi|2388673|gb|AAC58807.1|_replicase_polyprotein__Drosophila_C_virus\n-# Suject Length: 1759\n-# Total Subject Coverage: 1465\n-# Relative Subject Coverage: 0.832859579306\n-# Maximum Bit Score: 602.0\n-# Median Bit Score: 293.5\n-Locus_63_Transcript_2/2_Confidence_0.333_Length_343\t54.37\t103\t1636\t1738\t88.0\t5e-27\t111.0\n-Locus_65_Transcript_2/2_Confidence_0.333_Length_1324\t46.74\t445\t180\t624\t99.8\t1e-135\t434.0\n-Locus_65_Transcript_1/'..b'Confidence_0.000_Length_112\t55.56\t36\t599\t634\t95.5\t7e-04\t40.4\n-#\n-# gi|558482105|gb|AHA55668.1|_putative_DNA-dependent_RNA_polymerase_II_largest_subunit__Emiliania_hux\n-# Suject Length: 1055\n-# Total Subject Coverage: 36\n-# Relative Subject Coverage: 0.0341232227488\n-# Maximum Bit Score: 43.5\n-# Median Bit Score: 43.5\n-Locus_295_Transcript_1/1_Confidence_0.000_Length_115\t50.0\t36\t831\t866\t93.0\t8e-05\t43.5\n+# gi|395863918|gb|JN982269.1|_Infectious_bursal_disease_virus_isolate_SC12_VP2_protein_gene,_complete\n+# Suject Length: 1356\n+# Total Subject Coverage: 82\n+# Relative Subject Coverage: 0.0604719764012\n+# Maximum Bit Score: 50.0\n+# Mean Bit Score: 50.0\n+Locus_69_Transcript_1/1_Confidence_0.000_Length_164\t73.17\t82\t408\t327\t49.4\t2e-04\t50.0\n #\n-# gi|347601122|gb|AEP15608.1|_DNA-directed_RNA_polymerase_subunit_beta__Emiliania_huxleyi_virus_207\n-# Suject Length: 1053\n-# Total Subject Coverage: 36\n-# Relative Subject Coverage: 0.034188034188\n-# Maximum Bit Score: 43.5\n-# Median Bit Score: 43.5\n-Locus_295_Transcript_1/1_Confidence_0.000_Length_115\t50.0\t36\t831\t866\t93.0\t8e-05\t43.5\n-#\n-# gi|448932900|gb|AGE56458.1|_calcium-transporting_ATPase,_plasma_membrane-type__Paramecium_bursaria\n-# Suject Length: 849\n-# Total Subject Coverage: 36\n-# Relative Subject Coverage: 0.0424028268551\n-# Maximum Bit Score: 41.6\n-# Median Bit Score: 41.6\n-Locus_285_Transcript_1/1_Confidence_0.000_Length_112\t55.56\t36\t578\t613\t95.5\t3e-04\t41.6\n-#\n-# gi|347481891|gb|AEO97877.1|_DNA-directed_RNA_polymerase_subunit_beta__Emiliania_huxleyi_virus_84\n-# Suject Length: 1055\n-# Total Subject Coverage: 36\n-# Relative Subject Coverage: 0.0341232227488\n-# Maximum Bit Score: 43.5\n-# Median Bit Score: 43.5\n-Locus_295_Transcript_1/1_Confidence_0.000_Length_115\t50.0\t36\t831\t866\t93.0\t8e-05\t43.5\n-#\n-# gi|557952511|gb|AHA46305.1|_DNA-directed_RNA_polymerase_subunit_alpha__Insectomime_virus\n-# Suject Length: 1001\n-# Total Subject Coverage: 31\n-# Relative Subject Coverage: 0.030969030969\n-# Maximum Bit Score: 42.0\n-# Median Bit Score: 42.0\n-Locus_295_Transcript_1/1_Confidence_0.000_Length_115\t54.84\t31\t397\t427\t80.0\t3e-04\t42.0\n-#\n-# gi|326784736|gb|AEA06870.1|_DNA-directed_RNA_polymerase_subunit_alpha__Lausannevirus\n-# Suject Length: 999\n-# Total Subject Coverage: 31\n-# Relative Subject Coverage: 0.031031031031\n-# Maximum Bit Score: 43.5\n-# Median Bit Score: 43.5\n-Locus_295_Transcript_1/1_Confidence_0.000_Length_115\t58.06\t31\t395\t425\t80.0\t7e-05\t43.5\n-#\n-# gi|327409562|ref|YP_004346982.1|_DNA-directed_RNA_polymerase_subunit_alpha__Lausannevirus\n-# Suject Length: 999\n-# Total Subject Coverage: 31\n-# Relative Subject Coverage: 0.031031031031\n-# Maximum Bit Score: 43.5\n-# Median Bit Score: 43.5\n-Locus_295_Transcript_1/1_Confidence_0.000_Length_115\t58.06\t31\t395\t425\t80.0\t7e-05\t43.5\n-#\n-# gi|566082702|gb|AHC55112.1|_putative_DNA-directed_RNA_polymerase_subunit_Rpb1__Tunisvirus_fontaine2\n-# Suject Length: 1001\n-# Total Subject Coverage: 31\n-# Relative Subject Coverage: 0.030969030969\n-# Maximum Bit Score: 41.6\n-# Median Bit Score: 41.6\n-Locus_295_Transcript_1/1_Confidence_0.000_Length_115\t54.84\t31\t397\t427\t80.0\t3e-04\t41.6\n-#\n-# gi|567840471|gb|AHC95553.1|_glycoprotein_precursor__Lassa_virus\n-# Suject Length: 526\n-# Total Subject Coverage: 19\n-# Relative Subject Coverage: 0.0361216730038\n-# Maximum Bit Score: 44.3\n-# Median Bit Score: 44.3\n-Locus_1_Transcript_2/26_Confidence_0.051_Length_287\t89.47\t19\t1\t19\t19.5\t1e-04\t44.3\n-Locus_1_Transcript_4/26_Confidence_0.051_Length_306\t89.47\t19\t1\t19\t18.3\t1e-04\t44.3\n-Locus_1_Transcript_5/26_Confidence_0.077_Length_365\t89.47\t19\t1\t19\t15.3\t2e-04\t44.3\n-Locus_1_Transcript_3/26_Confidence_0.103_Length_422\t89.47\t19\t1\t19\t13.3\t2e-04\t44.3\n+# gi|24306007|gb|AF322444.1|_Infectious_bursal_disease_virus_segment_A_VP5_protein_and_polyprotein_ge\n+# Suject Length: 3085\n+# Total Subject Coverage: 82\n+# Relative Subject Coverage: 0.0265802269044\n+# Maximum Bit Score: 50.0\n+# Mean Bit Score: 50.0\n+Locus_69_Transcript_1/1_Confidence_0.000_Length_164\t73.17\t82\t454\t373\t49.4\t2e-04\t50.0\n'