| Previous changeset 5:22b6a4412ea6 (2012-09-07) Next changeset 7:3961e84d6225 (2012-09-13) |
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Commit message:
Update tool_dependencies, reinstate test |
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modified:
cd_hit_est.xml tool_dependencies.xml |
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| diff -r 22b6a4412ea6 -r f0c20796d33a cd_hit_est.xml --- a/cd_hit_est.xml Fri Sep 07 14:11:56 2012 -0500 +++ b/cd_hit_est.xml Tue Sep 11 08:55:27 2012 -0500 |
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| @@ -28,7 +28,6 @@ <data format="fasta" name="fasta_out" label="${tool.name} on ${on_string}: representatives.fasta" from_work_dir="rep_seq"/> </outputs> <tests> - <!-- <test> <param name="fasta_in" value="cd_hit_est_in.fa" /> <param name="similarity" value="0.9"/> @@ -45,7 +44,6 @@ </assert_contents> </output> </test> - --> </tests> <help> **CD-HIT-EST** |
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| diff -r 22b6a4412ea6 -r f0c20796d33a tool_dependencies.xml --- a/tool_dependencies.xml Fri Sep 07 14:11:56 2012 -0500 +++ b/tool_dependencies.xml Tue Sep 11 08:55:27 2012 -0500 |
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| @@ -3,7 +3,7 @@ <package name="cd-hit" version="4.6.1"> <install version="1.0"> <actions> - <action type="download_by_url">https://cdhit.googlecode.com/files/cd-hit-v4.6.1-2012-08-27.tgz</action> + <action type="download_by_url">http://cdhit.googlecode.com/files/cd-hit-v4.6.1-2012-08-27.tgz</action> <action type="shell_command">make openmp=yes</action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> |