| Previous changeset 8:852b3fe95c20 (2017-10-20) Next changeset 10:0cb1ba651e9e (2017-12-01) |
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Commit message:
planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/porechop commit 83364d7d78ca5524a08065daef995bfcd54a379d-dirty |
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modified:
porechop.xml |
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| diff -r 852b3fe95c20 -r e3ad639c692a porechop.xml --- a/porechop.xml Fri Oct 20 23:11:21 2017 -0400 +++ b/porechop.xml Fri Dec 01 21:27:15 2017 -0500 |
| [ |
| @@ -133,12 +133,24 @@ <collection type="list" name="output_collection_fastq" label="${tool.name} on ${on_string}"> <filter>out_format == 'fastq'</filter> + <filter>demux_section['demux_options']['demux'] == 'yes'</filter> <discover_datasets pattern="__designation_and_ext__" directory="out" format="fastqsanger" /> </collection> <collection type="list" name="output_collection_fasta" label="${tool.name} on ${on_string}"> <filter>out_format == 'fasta'</filter> + <filter>demux_section['demux_options']['demux'] == 'yes'</filter> <discover_datasets pattern="__designation_and_ext__" directory="out" format="fasta" /> </collection> + <data format="fastq" name="ouput_fastq"> + <discover_datasets directory='out' pattern="(?P<designation>.+)" ext="fastq" visible="true" assign_primary_output="true" /> + <filter>out_format == 'fastq'</filter> + <filter>demux_section['demux_options']['demux'] == 'no'</filter> + </data> + <data format="fasta" name="ouput_fasta"> + <discover_datasets directory='out' pattern="(?P<designation>.+)" ext="fasta" visible="true" assign_primary_output="true" /> + <filter>out_format == 'fasta'</filter> + <filter>demux_section['demux_options']['demux'] == 'no'</filter> + </data> <data format="tabular" name="result_table" label="${tool.name} on ${on_string} (summary)" /> </outputs> @@ -178,6 +190,13 @@ <element name="BC03" file="bar1_trim/BC03.fastq" compare="diff" decompress="true"/> </output_collection> </test> + <test> + <param name="input" value="test_barcodes.fastq" ftype="fastq" /> + <param name="demux" value="no" /> + <param name="trim" value="yes" /> + <param name="out_format" value="fasta" /> + <output name="output_fasta" file="no_demux.fasta" compare="diff" /> + </test> </tests> <!-- ***************************************************************** --> |