| Previous changeset 1:9ef108e34063 (2023-02-15) Next changeset 3:5ffc68b4ec04 (2023-02-17) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit 704e7cba33e85648198babefb4d82df66c6709f8 |
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modified:
data_manager/plasmidfinder_fetch_database.py data_manager/plasmidfinder_fetch_database.xml test-data/plasmidfinder.loc.test test-data/plasmidfinder_test_data_manager_2.1.json test-data/plasmidfinder_test_data_manager_latest.json |
| b |
| diff -r 9ef108e34063 -r bd56ac4cca16 data_manager/plasmidfinder_fetch_database.py --- a/data_manager/plasmidfinder_fetch_database.py Wed Feb 15 10:35:15 2023 +0000 +++ b/data_manager/plasmidfinder_fetch_database.py Fri Feb 17 08:04:44 2023 +0000 |
| [ |
| @@ -55,7 +55,7 @@ data_info = dict(value=plasmidfinder_value, name=plasmidfinder_name, date=self._plasmidfinder_date_version, - path=self._db_name) + path="plasmidfinder_database") self.plasmidfinder_table_list["data_tables"][self.data_table_name] = [data_info] return self.plasmidfinder_table_list |
| b |
| diff -r 9ef108e34063 -r bd56ac4cca16 data_manager/plasmidfinder_fetch_database.xml --- a/data_manager/plasmidfinder_fetch_database.xml Wed Feb 15 10:35:15 2023 +0000 +++ b/data_manager/plasmidfinder_fetch_database.xml Fri Feb 17 08:04:44 2023 +0000 |
| [ |
| @@ -26,7 +26,7 @@ <param name="database_select" value="latest"/> <output name="output_file" value="plasmidfinder_test_data_manager_latest.json"> <assert_contents> - <has_text_matching expression='\{"data_tables":\ \{\"plasmidfinder_database\"\:\ \[\{\"date\"\:\ \"\d\d\d\d\w\d\d\w\d\d\", \"name\"\: \"\w\w\w\w\w\w\w\w\w\w\w\w\d\d\d\d-\d\d-\d\d\",\ \"path\"\:\ \"plasmidfinder-db\",\ \"value\"\:\ \"plasmidfinder_\w\w\w\w\w\w\w\w\w\w\w_\d\d\d\d-\d\d-\d\d\"' /> + <has_text_matching expression="\{"data_tables"\:\ {"plasmidfinder_database":\ \[\{"date":\ "\d\d\d\d-\d\d-\d\d",\ "name":\ "c18e08c17a59_\d\d\d\d-\d\d-\d\d",\ "path":\ "plasmidfinder_database",\ "value":\ "plasmidfinder_c18e08c17a59_2023-02-15"\}\]\}\}"/> </assert_contents> </output> </test> @@ -35,7 +35,7 @@ <param name="database_select" value="2.1"/> <output name="output_file" value="plasmidfinder_test_data_manager_2.1.json"> <assert_contents> - <has_text_matching expression='"data_tables": \{"plasmidfinder_database": \[\{"date": "\d\d\d\\d-\d\d-\d\d", "name": "2\.1_\d\d\d\d-\d\d-\d\d", "path": "plasmidfinder-db", "value": "plasmidfinder_\w\w\w\w\w\w\w\w\w\w\w\w_\d\d\d\d-\d\d-\d\d"' /> + <has_text_matching expression="\{"data_tables"\:\ {"plasmidfinder_database":\ \[\{"date":\ "\d\d\d\d-\d\d-\d\d",\ "name":\ "2.1_\d\d\d\d-\d\d-\d\d",\ "path":\ "plasmidfinder_database",\ "value":\ "plasmidfinder_1307168b1ce7_2023-02-15"\}\]\}\}"/> </assert_contents> </output> </test> |
| b |
| diff -r 9ef108e34063 -r bd56ac4cca16 test-data/plasmidfinder.loc.test --- a/test-data/plasmidfinder.loc.test Wed Feb 15 10:35:15 2023 +0000 +++ b/test-data/plasmidfinder.loc.test Fri Feb 17 08:04:44 2023 +0000 |
| b |
| @@ -1,12 +1,4 @@ -plasmidfinder_9002e7282dd0_2022-12-20 9002e7282dd0_2022-12-20 2022-12-20 plasmidfinder-db -plasmidfinder_1307168b1ce7_2022-12-20 2.1_2022-12-20 2022-12-20 plasmidfinder-db -plasmidfinder_c18e08c17a59_2023-02-14 c18e08c17a59_2023-02-14 2023-02-14 /tmp/tmpuox8103m/galaxy-dev/tool-data/plasmidfinder-db/c18e08c17a59_2023-02-14 -plasmidfinder_1307168b1ce7_2023-02-14 2.1_2023-02-14 2023-02-14 /tmp/tmpuox8103m/galaxy-dev/tool-data/plasmidfinder-db/2.1_2023-02-14 -plasmidfinder_c18e08c17a59_2023-02-14 c18e08c17a59_2023-02-14 2023-02-14 /tmp/tmpn3vh0q7x/galaxy-dev/tool-data/plasmidfinder-db/c18e08c17a59_2023-02-14 -plasmidfinder_1307168b1ce7_2023-02-14 2.1_2023-02-14 2023-02-14 /tmp/tmpn3vh0q7x/galaxy-dev/tool-data/plasmidfinder-db/2.1_2023-02-14 -plasmidfinder_c18e08c17a59_2023-02-14 c18e08c17a59_2023-02-14 2023-02-14 /tmp/tmp2rmtj19j/galaxy-dev/tool-data/plasmidfinder-db/c18e08c17a59_2023-02-14 -plasmidfinder_1307168b1ce7_2023-02-14 2.1_2023-02-14 2023-02-14 /tmp/tmp2rmtj19j/galaxy-dev/tool-data/plasmidfinder-db/2.1_2023-02-14 -plasmidfinder_c18e08c17a59_2023-02-14 c18e08c17a59_2023-02-14 2023-02-14 /tmp/tmp1py50qws/galaxy-dev/tool-data/plasmidfinder-db/c18e08c17a59_2023-02-14 -plasmidfinder_1307168b1ce7_2023-02-14 2.1_2023-02-14 2023-02-14 /tmp/tmp1py50qws/galaxy-dev/tool-data/plasmidfinder-db/2.1_2023-02-14 -plasmidfinder_c18e08c17a59_2023-02-14 c18e08c17a59_2023-02-14 2023-02-14 /tmp/tmpyavtigve/galaxy-dev/tool-data/plasmidfinder-db/c18e08c17a59_2023-02-14 -plasmidfinder_1307168b1ce7_2023-02-14 2.1_2023-02-14 2023-02-14 /tmp/tmpyavtigve/galaxy-dev/tool-data/plasmidfinder-db/2.1_2023-02-14 +plasmidfinder_c18e08c17a59_2023-02-15 c18e08c17a59_2023-02-15 2023-02-15 plasmidfinder_database +plasmidfinder_1307168b1ce7_2023-02-15 2.1_2023-02-15 2023-02-15 plasmidfinder_database +plasmidfinder_c18e08c17a59_2023-02-15 c18e08c17a59_2023-02-15 2023-02-15 /tmp/tmp19jlq5v4/galaxy-dev/tool-data/plasmidfinder-db/c18e08c17a59_2023-02-15 +plasmidfinder_1307168b1ce7_2023-02-15 2.1_2023-02-15 2023-02-15 /tmp/tmp19jlq5v4/galaxy-dev/tool-data/plasmidfinder-db/2.1_2023-02-15 |
| b |
| diff -r 9ef108e34063 -r bd56ac4cca16 test-data/plasmidfinder_test_data_manager_2.1.json --- a/test-data/plasmidfinder_test_data_manager_2.1.json Wed Feb 15 10:35:15 2023 +0000 +++ b/test-data/plasmidfinder_test_data_manager_2.1.json Fri Feb 17 08:04:44 2023 +0000 |
| [ |
| @@ -1,1 +1,1 @@ -{"data_tables": {"plasmidfinder_database": [{"date": "2023-01-27", "name": "2.1_2023-01-27", "path": "plasmidfinder-db", "value": "plasmidfinder_1307168b1ce7_2023-01-27"}]}} \ No newline at end of file +{"data_tables": {"plasmidfinder_database": [{"date": "2023-02-15", "name": "2.1_2023-02-15", "path": "plasmidfinder_database", "value": "plasmidfinder_1307168b1ce7_2023-02-15"}]}} \ No newline at end of file |
| b |
| diff -r 9ef108e34063 -r bd56ac4cca16 test-data/plasmidfinder_test_data_manager_latest.json --- a/test-data/plasmidfinder_test_data_manager_latest.json Wed Feb 15 10:35:15 2023 +0000 +++ b/test-data/plasmidfinder_test_data_manager_latest.json Fri Feb 17 08:04:44 2023 +0000 |
| [ |
| @@ -1,1 +1,1 @@ -{"data_tables": {"plasmidfinder_database": [{"date": "2022-12-19", "name": "9002e7282dd0_2022-12-19", "path": "plasmidfinder-db", "value": "plasmidfinder_9002e7282dd0_2022-12-19"}]}} \ No newline at end of file +{"data_tables": {"plasmidfinder_database": [{"date": "2023-02-15", "name": "c18e08c17a59_2023-02-15", "path": "plasmidfinder_database", "value": "plasmidfinder_c18e08c17a59_2023-02-15"}]}} \ No newline at end of file |