| Previous changeset 22:5da81c4ff67e (2020-01-07) |
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Commit message:
Uploaded |
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modified:
repex_tarean.xml |
| b |
| diff -r 5da81c4ff67e -r bb426ce3c12b repex_tarean.xml --- a/repex_tarean.xml Tue Jan 07 13:36:24 2020 +0000 +++ b/repex_tarean.xml Tue Jan 07 13:38:54 2020 +0000 |
| b |
| @@ -7,11 +7,8 @@ </stdio> <description>Identification of genomic tandem repeats from NGS data</description> <requirements> - <requirement type="package" version="0.9.1">pyrserve</requirement> - <requirement type="package" version="3.7.4">python</requirement> - <requirement type="package">last</requirement> + <requirement type="package">imagemagick</requirement> <requirement type="package">mafft</requirement> - <requirement type="package">imagemagick</requirement> <requirement type="package">blast</requirement> <requirement type="package">diamond</requirement> <requirement type="package">blast-legacy</requirement> @@ -31,8 +28,9 @@ <requirement type="package">r-rsqlite</requirement> <requirement type="package">r-rserve</requirement> <requirement type="package">bioconductor-biostrings</requirement> - <requirement type="package" version="1.0">repex_tarean</requirement> + <requirement type="package" version="1.1">repex_tarean</requirement> <requirement type="set_environment">REPEX</requirement> + <requirement type="package" version="0.9.1">pyrserve</requirement> </requirements> <command detect_errors="exit_code"> export PYTHONHASHSEED=0; @@ -54,7 +52,7 @@ cat stdout.log >> ${log} ; echo "STDERR CONTENT:" >> ${log} ; cat stderr.log >> ${log} && - ${__tool_directory__}/stderr_filter.py stderr.log && + \${REPEX}/stderr_filter.py stderr.log && cd tarean_output && zip -r ${ReportArchive}.zip * && mv ${ReportArchive}.zip ${ReportArchive} && |