| Previous changeset 0:3fc985b6afdd (2017-07-01) Next changeset 2:37c8b1afc814 (2017-10-19) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit d578fad97ce545d68dde40155d36426a121e4447 |
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modified:
macros.xml tool-data/liftOver.loc.sample |
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added:
tool_data_table_conf.xml.sample |
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| diff -r 3fc985b6afdd -r af9e03d85771 macros.xml --- a/macros.xml Sat Jul 01 17:45:07 2017 -0400 +++ b/macros.xml Tue Sep 26 04:47:28 2017 -0400 |
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| @@ -27,9 +27,9 @@ <when value="cached"> <param name="input_chain" type="select" label="Lift Over To"> <options from_file="liftOver.loc"> - <column name="name" index="1"/> - <column name="value" index="2"/> - <column name="dbkey" index="0"/> + <column name="dbkey" index="0"/><!-- species/build 'from' --> + <column name="name" index="1"/><!-- species/build 'to' --> + <column name="value" index="2"/><!-- path of chain file --> <filter type="data_meta" ref="input" key="dbkey" column="0"/> </options> </param> |
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| diff -r 3fc985b6afdd -r af9e03d85771 tool-data/liftOver.loc.sample --- a/tool-data/liftOver.loc.sample Sat Jul 01 17:45:07 2017 -0400 +++ b/tool-data/liftOver.loc.sample Tue Sep 26 04:47:28 2017 -0400 |
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| @@ -8,6 +8,9 @@ #located at /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToGalGal3.over.chain, #then the liftOver.loc entry would look like this: # +#<FromSpecies> <ToSpecies> <PathToChainFile> +#<dbkey> <name> <value> +# #anoCar1 galGal3 /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToGalGal3.over.chain # #and your /depot/data2/galaxy/anoCar1/liftOver directory would |
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| diff -r 3fc985b6afdd -r af9e03d85771 tool_data_table_conf.xml.sample --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.sample Tue Sep 26 04:47:28 2017 -0400 |
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| @@ -0,0 +1,12 @@ +<tables> + <!-- Locations of all fasta files under genome directory --> + <table name="all_fasta" comment_char="#"> + <columns>value, dbkey, name, path</columns> + <file path="tool-data/all_fasta.loc" /> + </table> + <!-- Locations of all liftOver files --> + <table name="liftOver" comment_char="#"> + <columns>dbkey, name, value</columns> + <file path="tool-data/liftOver.loc" /> + </table> +</tables> |