| Previous changeset 17:3ece579827f4 (2020-02-06) Next changeset 19:ece1dd6ea5d5 (2020-03-24) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 4b602d427e0fc0da5353a4510798349de98e4ae4" |
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modified:
hicBuildMatrix.xml macros.xml test-data/cHi-C/chicAggregateStatistic/batch_mode_file_names.txt test-data/cHi-C/chicDifferentialTest/rejectedFilesList.txt test-data/cHi-C/chicSignificantInteractions/output_4_significant_files.txt test-data/cHi-C/chicSignificantInteractions/output_4_target_list.txt test-data/cHi-C/chicSignificantInteractions/output_5_significant_files.txt test-data/cHi-C/chicSignificantInteractions/output_5_target_list.txt test-data/cHi-C/chicViewpoint/fileNames_one_matrix.txt test-data/cHi-C/chicViewpoint/fileNames_two_matrices.txt |
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added:
static/images/hicDetectLoops.png static/images/plot_svl.png test-data/cHi-C/background.txt test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt test-data/cHi-C/chicAggregateStatistic/regular_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt test-data/cHi-C/chicAggregateStatistic/regular_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.txt test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.txt test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.txt test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.txt test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.txt test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.txt test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.txt test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.txt test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.txt test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.txt test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.txt test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.txt test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt test-data/cHi-C/chicSignificantInteractions/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt test-data/cHi-C/chicSignificantInteractions/output_1_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt test-data/cHi-C/chicSignificantInteractions/output_2/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt test-data/cHi-C/chicSignificantInteractions/output_2_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt test-data/cHi-C/chicSignificantInteractions/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt test-data/cHi-C/chicSignificantInteractions/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt test-data/cHi-C/chicSignificantInteractions/output_3_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt test-data/cHi-C/chicSignificantInteractions/output_3_target/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.txt test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.txt test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.txt test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.txt test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt |
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removed:
test-data/cHi-C/background.bed test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed test-data/cHi-C/chicAggregateStatistic/regular_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed test-data/cHi-C/chicAggregateStatistic/regular_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed test-data/cHi-C/chicSignificantInteractions/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed test-data/cHi-C/chicSignificantInteractions/output_1_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed test-data/cHi-C/chicSignificantInteractions/output_2/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed test-data/cHi-C/chicSignificantInteractions/output_2_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed test-data/cHi-C/chicSignificantInteractions/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed test-data/cHi-C/chicSignificantInteractions/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed test-data/cHi-C/chicSignificantInteractions/output_3_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed test-data/cHi-C/chicSignificantInteractions/output_3_target/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab hicBuildMatrix.xml --- a/hicBuildMatrix.xml Thu Feb 06 00:25:04 2020 +0000 +++ b/hicBuildMatrix.xml Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -25,7 +25,7 @@ #end if #if $restrictionCutFileBinSize_conditional.restrictionCutFileBinSize_selector == "optionBinSize": - --binSize + --binSize #for $repeat in $restrictionCutFileBinSize_conditional.binSizes '${repeat.binSize}' #end for @@ -72,7 +72,7 @@ ]]> </command> <inputs> - <repeat max="2" min="2" name="samFiles" title="Sam/Bam files to process (forward/reverse)" + <repeat max="2" min="2" name="samFiles" title="Sam/Bam files to process (forward/reverse)" help="Please use the special BAM datatype: qname_input_sorted.bam and use for 'bowtie2' the '--reorder' option to create a BAM file."> <param name="samFile" type="data" format="sam,qname_input_sorted.bam"/> </repeat> @@ -117,10 +117,10 @@ <param argument="--danglingSequence" type="text" optional="true" label="Dangling sequence" help="Sequence left by the restriction enzyme after cutting. - Each restriction enzyme recognizes a different DNA sequence and, + Each restriction enzyme recognizes a different DNA sequence and, after cutting, they leave behind a specific ‘sticky’ end or dangling end sequence. - For example, for HindIII the restriction site is AAGCTT and the dangling end is AGCT. - For DpnII, the restriction site and dangling end sequence are the same: GATC. + For example, for HindIII the restriction site is AAGCTT and the dangling end is AGCT. + For DpnII, the restriction site and dangling end sequence are the same: GATC. This information is easily found on the description of the restriction enzyme. The dangling sequence is used to classify and report reads whose 5’ end starts with such sequence as dangling-end reads. A significant portion of dangling-end reads in a sample are indicative of a problem with the re-ligation step of the protocol. "/> |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab macros.xml --- a/macros.xml Thu Feb 06 00:25:04 2020 +0000 +++ b/macros.xml Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -1,6 +1,6 @@ <macros> <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token> - <token name="@WRAPPER_VERSION@">3.4.1</token> + <token name="@WRAPPER_VERSION@">3.4.2</token> <token name="@USE_RANGE@"> #if $use_range.select_use_range == "yes_use_range": --range $range_min:$range_max |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab static/images/hicDetectLoops.png |
| b |
| Binary file static/images/hicDetectLoops.png has changed |
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| diff -r 3ece579827f4 -r aefb1d4c85ab static/images/plot_svl.png |
| b |
| Binary file static/images/plot_svl.png has changed |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/background.bed --- a/test-data/cHi-C/background.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,1002 +0,0 @@\n-Relative position\tsize nbinom\tprob nbinom\tmax value\tmean value\n--500000\t58.254577634279\t0.998604709282\t1.333333333333\t0.000105073709\n--499000\t10.000013353187\t0.991925224088\t1.500000000000\t0.000105073709\n--498000\t72.266262784304\t0.998828265884\t1.200000000000\t0.000111077921\n--497000\t51.093422441771\t0.998183086351\t1.000000000000\t0.000120084239\n--496000\t86.575220693033\t0.998899865570\t0.800000000000\t0.000123086345\n--495000\t72.441590407550\t0.998655447638\t0.800000000000\t0.000126088451\n--494000\t75.085350270547\t0.998668414055\t1.000000000000\t0.000129090557\n--493000\t71.967411178924\t0.998612779641\t1.000000000000\t0.000129090557\n--492000\t77.026231982211\t0.998763649786\t1.200000000000\t0.000123086345\n--491000\t96.154018360868\t0.999129584825\t1.000000000000\t0.000108075815\n--490000\t70.641792331241\t0.998918479365\t1.400000000000\t0.000099069497\n--489000\t72.297114570842\t0.998971709245\t0.800000000000\t0.000096067391\n--488000\t55.276417890737\t0.998907322028\t0.800000000000\t0.000078054755\n--487000\t75.866231077639\t0.999020037562\t0.600000000000\t0.000096067391\n--486000\t77.908114872120\t0.999075493568\t0.600000000000\t0.000093065285\n--485000\t70.196050128375\t0.998940963837\t0.600000000000\t0.000096067391\n--484000\t48.306835304302\t0.998789125810\t0.600000000000\t0.000078054755\n--483000\t65.826727385050\t0.999115985283\t0.600000000000\t0.000075052649\n--482000\t10.000003651221\t0.996523342626\t0.400000000000\t0.000045031590\n--481000\t48.188933357556\t0.999179280048\t0.400000000000\t0.000051035802\n--480000\t10.000001173914\t0.997216871755\t0.400000000000\t0.000036025272\n--479000\t10.000002160096\t0.996985563716\t0.400000000000\t0.000039027378\n--478000\t61.980720096540\t0.999287603012\t0.800000000000\t0.000057040014\n--477000\t47.193502172887\t0.999138448161\t0.600000000000\t0.000054037908\n--476000\t75.435666576826\t0.999477638616\t0.600000000000\t0.000051035802\n--475000\t83.258498044933\t0.999385868055\t0.600000000000\t0.000066046332\n--474000\t64.452927063111\t0.999206823435\t0.600000000000\t0.000066046332\n--473000\t68.592799621533\t0.999390093904\t0.600000000000\t0.000054037908\n--472000\t48.567204011739\t0.999139405277\t0.600000000000\t0.000054037908\n--471000\t10.000004448331\t0.996292395667\t0.600000000000\t0.000048033696\n--470000\t10.000000920405\t0.995831238986\t1.400000000000\t0.000054037908\n--469000\t10.000003872489\t0.994909340544\t1.400000000000\t0.000066046332\n--468000\t63.250123985231\t0.999022818205\t1.400000000000\t0.000081056861\n--467000\t51.399551404579\t0.998558644000\t1.400000000000\t0.000096067391\n--466000\t64.883458129266\t0.998762977849\t1.000000000000\t0.000105073709\n--465000\t86.383451689662\t0.999139519880\t0.800000000000\t0.000096067391\n--464000\t64.657320565128\t0.998830168725\t1.000000000000\t0.000099069497\n--463000\t69.011442263596\t0.998889631783\t1.000000000000\t0.000099069497\n--462000\t120.365580780362\t0.999304923056\t1.000000000000\t0.000108075815\n--461000\t83.873478804403\t0.999085832019\t1.000000000000\t0.000099069497\n--460000\t76.791436688795\t0.998822607239\t0.800000000000\t0.000117082133\n--459000\t71.300309154477\t0.998707418591\t1.000000000000\t0.000120084239\n--458000\t70.551044686671\t0.998794143443\t0.600000000000\t0.000111077921\n--457000\t88.657625851365\t0.999084917164\t0.800000000000\t0.000105073709\n--456000\t66.985331452249\t0.998825498193\t0.800000000000\t0.000102071603\n--455000\t212.376735013798\t0.999710065148\t0.600000000000\t0.000078054755\n--454000\t62.703317289439\t0.999261443476\t0.600000000000\t0.000060042120\n--453000\t45.696967611307\t0.998932417121\t0.600000000000\t0.000063044226\n--452000\t82.313181248075\t0.999548168551\t0.600000000000\t0.000048033696\n--451000\t61.955802866608\t0.999249835457\t0.600000000000\t0.000060042120\n--450000\t71.163546816639\t0.999118429295\t1.000000000000\t0.000081056861\n--449000\t57.404577886000\t0.998868956077\t1.000000000000\t0.000084058967\n--448000\t78.889496868591\t0.999175114488\t1.000000000000\t0.000084058967\n--447000\t59.455705064746\t0.998872066360\t1.000000000000\t0.000087061073\n--446000\t69.521205032032\t0.998763823049\t1.000000000000\t0.000111077921\n--445000\t99.901425243691\t0.999325366218\t0.800000000000\t0.0000870'..b'92515295592\t0.998432747334\t1.400000000000\t0.000222155842\n-444000\t82.443622273366\t0.997719903159\t1.400000000000\t0.000243170584\n-445000\t70.933399279725\t0.997396373546\t1.400000000000\t0.000243170584\n-446000\t95.161892262226\t0.998095770809\t1.600000000000\t0.000234164266\n-447000\t124.614672839908\t0.998565069417\t1.200000000000\t0.000231162160\n-448000\t77.860490008359\t0.997704488044\t1.400000000000\t0.000231162160\n-449000\t65.217115835699\t0.997403641809\t1.400000000000\t0.000219153736\n-450000\t75.445932132698\t0.998007293338\t1.200000000000\t0.000198138995\n-451000\t95.181162634818\t0.998473187366\t1.000000000000\t0.000186130571\n-452000\t94.977236808895\t0.998461455130\t1.000000000000\t0.000189132677\n-453000\t71.519354123232\t0.997988008873\t1.000000000000\t0.000186130571\n-454000\t75.038048093362\t0.998148510684\t1.000000000000\t0.000183128465\n-455000\t66.094167095466\t0.997699897371\t1.000000000000\t0.000198138995\n-456000\t111.325708146664\t0.998498182775\t1.000000000000\t0.000216151630\n-457000\t102.171886886530\t0.998454607629\t1.000000000000\t0.000204143206\n-458000\t88.125308869888\t0.998313915544\t1.000000000000\t0.000192134783\n-459000\t70.605027521073\t0.997930191387\t0.800000000000\t0.000189132677\n-460000\t100.268739339170\t0.998772290781\t0.600000000000\t0.000159111617\n-461000\t74.543018827171\t0.998473634038\t0.800000000000\t0.000147103193\n-462000\t63.337319446090\t0.998204073767\t0.800000000000\t0.000147103193\n-463000\t117.089896011864\t0.999027727546\t0.800000000000\t0.000147103193\n-464000\t91.138003901288\t0.998496746777\t1.800000000000\t0.000177124253\n-465000\t92.914491189803\t0.998350787907\t1.800000000000\t0.000198138995\n-466000\t52.209334348546\t0.997159438011\t2.400000000000\t0.000192134783\n-467000\t77.918569531358\t0.998034146232\t2.800000000000\t0.000198138995\n-468000\t40.028010375624\t0.996410794913\t2.800000000000\t0.000186130571\n-469000\t52.807401795042\t0.997408431862\t1.400000000000\t0.000177124253\n-470000\t105.325058737937\t0.998676526339\t1.400000000000\t0.000180126359\n-471000\t97.395447231439\t0.998474152554\t1.000000000000\t0.000192134783\n-472000\t71.036732364957\t0.998055374489\t1.200000000000\t0.000183128465\n-473000\t58.839853998831\t0.997768804625\t1.200000000000\t0.000174122147\n-474000\t109.506948227434\t0.998942877974\t1.000000000000\t0.000150105299\n-475000\t73.687080792836\t0.998676219719\t0.600000000000\t0.000126088451\n-476000\t86.562200266338\t0.998926533547\t0.600000000000\t0.000120084239\n-477000\t78.601283549403\t0.998670347780\t0.600000000000\t0.000135094769\n-478000\t77.287682759273\t0.998311780993\t1.000000000000\t0.000168117935\n-479000\t80.196363250368\t0.998336155363\t0.800000000000\t0.000174122147\n-480000\t95.618679354949\t0.998538823715\t0.800000000000\t0.000180126359\n-481000\t71.324679124414\t0.998079961192\t1.000000000000\t0.000177124253\n-482000\t98.947326582471\t0.998662082026\t1.200000000000\t0.000171120041\n-483000\t98.312778915279\t0.998677055532\t1.000000000000\t0.000168117935\n-484000\t80.536358888257\t0.998500685590\t1.200000000000\t0.000156109511\n-485000\t75.299149742118\t0.998174557637\t1.200000000000\t0.000177124253\n-486000\t80.676043504302\t0.998160484267\t1.600000000000\t0.000192134783\n-487000\t65.456290718619\t0.997731312445\t1.600000000000\t0.000192134783\n-488000\t135.605664962437\t0.998837097471\t1.400000000000\t0.000204143206\n-489000\t78.041126983216\t0.997890938542\t1.600000000000\t0.000213149524\n-490000\t73.842941938827\t0.998020155259\t1.200000000000\t0.000192134783\n-491000\t135.330452041151\t0.998884251454\t1.000000000000\t0.000195136889\n-492000\t70.441325198247\t0.997891524929\t1.000000000000\t0.000192134783\n-493000\t93.145208276513\t0.998579085962\t1.200000000000\t0.000171120041\n-494000\t93.195291870240\t0.998579645775\t1.200000000000\t0.000171120041\n-495000\t66.167995861224\t0.997615723218\t1.200000000000\t0.000204143206\n-496000\t68.869469387443\t0.998039511367\t1.200000000000\t0.000174122147\n-497000\t61.393255588548\t0.997958646123\t1.400000000000\t0.000162113723\n-498000\t64.393702971434\t0.998089554455\t1.200000000000\t0.000159111617\n-499000\t64.222140571019\t0.998102497389\t1.000000000000\t0.000157610564\n-500000\t10.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/background.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/background.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| b'@@ -0,0 +1,1002 @@\n+Relative position\tsize nbinom\tprob nbinom\tmax value\tmean value\n+-500000\t58.254577634279\t0.998604709282\t1.333333333333\t0.000105073709\n+-499000\t10.000013353187\t0.991925224088\t1.500000000000\t0.000105073709\n+-498000\t72.266262784304\t0.998828265884\t1.200000000000\t0.000111077921\n+-497000\t51.093422441771\t0.998183086351\t1.000000000000\t0.000120084239\n+-496000\t86.575220693033\t0.998899865570\t0.800000000000\t0.000123086345\n+-495000\t72.441590407550\t0.998655447638\t0.800000000000\t0.000126088451\n+-494000\t75.085350270547\t0.998668414055\t1.000000000000\t0.000129090557\n+-493000\t71.967411178924\t0.998612779641\t1.000000000000\t0.000129090557\n+-492000\t77.026231982211\t0.998763649786\t1.200000000000\t0.000123086345\n+-491000\t96.154018360868\t0.999129584825\t1.000000000000\t0.000108075815\n+-490000\t70.641792331241\t0.998918479365\t1.400000000000\t0.000099069497\n+-489000\t72.297114570842\t0.998971709245\t0.800000000000\t0.000096067391\n+-488000\t55.276417890737\t0.998907322028\t0.800000000000\t0.000078054755\n+-487000\t75.866231077639\t0.999020037562\t0.600000000000\t0.000096067391\n+-486000\t77.908114872120\t0.999075493568\t0.600000000000\t0.000093065285\n+-485000\t70.196050128375\t0.998940963837\t0.600000000000\t0.000096067391\n+-484000\t48.306835304302\t0.998789125810\t0.600000000000\t0.000078054755\n+-483000\t65.826727385050\t0.999115985283\t0.600000000000\t0.000075052649\n+-482000\t10.000003651221\t0.996523342626\t0.400000000000\t0.000045031590\n+-481000\t48.188933357556\t0.999179280048\t0.400000000000\t0.000051035802\n+-480000\t10.000001173914\t0.997216871755\t0.400000000000\t0.000036025272\n+-479000\t10.000002160096\t0.996985563716\t0.400000000000\t0.000039027378\n+-478000\t61.980720096540\t0.999287603012\t0.800000000000\t0.000057040014\n+-477000\t47.193502172887\t0.999138448161\t0.600000000000\t0.000054037908\n+-476000\t75.435666576826\t0.999477638616\t0.600000000000\t0.000051035802\n+-475000\t83.258498044933\t0.999385868055\t0.600000000000\t0.000066046332\n+-474000\t64.452927063111\t0.999206823435\t0.600000000000\t0.000066046332\n+-473000\t68.592799621533\t0.999390093904\t0.600000000000\t0.000054037908\n+-472000\t48.567204011739\t0.999139405277\t0.600000000000\t0.000054037908\n+-471000\t10.000004448331\t0.996292395667\t0.600000000000\t0.000048033696\n+-470000\t10.000000920405\t0.995831238986\t1.400000000000\t0.000054037908\n+-469000\t10.000003872489\t0.994909340544\t1.400000000000\t0.000066046332\n+-468000\t63.250123985231\t0.999022818205\t1.400000000000\t0.000081056861\n+-467000\t51.399551404579\t0.998558644000\t1.400000000000\t0.000096067391\n+-466000\t64.883458129266\t0.998762977849\t1.000000000000\t0.000105073709\n+-465000\t86.383451689662\t0.999139519880\t0.800000000000\t0.000096067391\n+-464000\t64.657320565128\t0.998830168725\t1.000000000000\t0.000099069497\n+-463000\t69.011442263596\t0.998889631783\t1.000000000000\t0.000099069497\n+-462000\t120.365580780362\t0.999304923056\t1.000000000000\t0.000108075815\n+-461000\t83.873478804403\t0.999085832019\t1.000000000000\t0.000099069497\n+-460000\t76.791436688795\t0.998822607239\t0.800000000000\t0.000117082133\n+-459000\t71.300309154477\t0.998707418591\t1.000000000000\t0.000120084239\n+-458000\t70.551044686671\t0.998794143443\t0.600000000000\t0.000111077921\n+-457000\t88.657625851365\t0.999084917164\t0.800000000000\t0.000105073709\n+-456000\t66.985331452249\t0.998825498193\t0.800000000000\t0.000102071603\n+-455000\t212.376735013798\t0.999710065148\t0.600000000000\t0.000078054755\n+-454000\t62.703317289439\t0.999261443476\t0.600000000000\t0.000060042120\n+-453000\t45.696967611307\t0.998932417121\t0.600000000000\t0.000063044226\n+-452000\t82.313181248075\t0.999548168551\t0.600000000000\t0.000048033696\n+-451000\t61.955802866608\t0.999249835457\t0.600000000000\t0.000060042120\n+-450000\t71.163546816639\t0.999118429295\t1.000000000000\t0.000081056861\n+-449000\t57.404577886000\t0.998868956077\t1.000000000000\t0.000084058967\n+-448000\t78.889496868591\t0.999175114488\t1.000000000000\t0.000084058967\n+-447000\t59.455705064746\t0.998872066360\t1.000000000000\t0.000087061073\n+-446000\t69.521205032032\t0.998763823049\t1.000000000000\t0.000111077921\n+-445000\t99.901425243691\t0.999325366218\t0.800000000000\t0.0000870'..b'92515295592\t0.998432747334\t1.400000000000\t0.000222155842\n+444000\t82.443622273366\t0.997719903159\t1.400000000000\t0.000243170584\n+445000\t70.933399279725\t0.997396373546\t1.400000000000\t0.000243170584\n+446000\t95.161892262226\t0.998095770809\t1.600000000000\t0.000234164266\n+447000\t124.614672839908\t0.998565069417\t1.200000000000\t0.000231162160\n+448000\t77.860490008359\t0.997704488044\t1.400000000000\t0.000231162160\n+449000\t65.217115835699\t0.997403641809\t1.400000000000\t0.000219153736\n+450000\t75.445932132698\t0.998007293338\t1.200000000000\t0.000198138995\n+451000\t95.181162634818\t0.998473187366\t1.000000000000\t0.000186130571\n+452000\t94.977236808895\t0.998461455130\t1.000000000000\t0.000189132677\n+453000\t71.519354123232\t0.997988008873\t1.000000000000\t0.000186130571\n+454000\t75.038048093362\t0.998148510684\t1.000000000000\t0.000183128465\n+455000\t66.094167095466\t0.997699897371\t1.000000000000\t0.000198138995\n+456000\t111.325708146664\t0.998498182775\t1.000000000000\t0.000216151630\n+457000\t102.171886886530\t0.998454607629\t1.000000000000\t0.000204143206\n+458000\t88.125308869888\t0.998313915544\t1.000000000000\t0.000192134783\n+459000\t70.605027521073\t0.997930191387\t0.800000000000\t0.000189132677\n+460000\t100.268739339170\t0.998772290781\t0.600000000000\t0.000159111617\n+461000\t74.543018827171\t0.998473634038\t0.800000000000\t0.000147103193\n+462000\t63.337319446090\t0.998204073767\t0.800000000000\t0.000147103193\n+463000\t117.089896011864\t0.999027727546\t0.800000000000\t0.000147103193\n+464000\t91.138003901288\t0.998496746777\t1.800000000000\t0.000177124253\n+465000\t92.914491189803\t0.998350787907\t1.800000000000\t0.000198138995\n+466000\t52.209334348546\t0.997159438011\t2.400000000000\t0.000192134783\n+467000\t77.918569531358\t0.998034146232\t2.800000000000\t0.000198138995\n+468000\t40.028010375624\t0.996410794913\t2.800000000000\t0.000186130571\n+469000\t52.807401795042\t0.997408431862\t1.400000000000\t0.000177124253\n+470000\t105.325058737937\t0.998676526339\t1.400000000000\t0.000180126359\n+471000\t97.395447231439\t0.998474152554\t1.000000000000\t0.000192134783\n+472000\t71.036732364957\t0.998055374489\t1.200000000000\t0.000183128465\n+473000\t58.839853998831\t0.997768804625\t1.200000000000\t0.000174122147\n+474000\t109.506948227434\t0.998942877974\t1.000000000000\t0.000150105299\n+475000\t73.687080792836\t0.998676219719\t0.600000000000\t0.000126088451\n+476000\t86.562200266338\t0.998926533547\t0.600000000000\t0.000120084239\n+477000\t78.601283549403\t0.998670347780\t0.600000000000\t0.000135094769\n+478000\t77.287682759273\t0.998311780993\t1.000000000000\t0.000168117935\n+479000\t80.196363250368\t0.998336155363\t0.800000000000\t0.000174122147\n+480000\t95.618679354949\t0.998538823715\t0.800000000000\t0.000180126359\n+481000\t71.324679124414\t0.998079961192\t1.000000000000\t0.000177124253\n+482000\t98.947326582471\t0.998662082026\t1.200000000000\t0.000171120041\n+483000\t98.312778915279\t0.998677055532\t1.000000000000\t0.000168117935\n+484000\t80.536358888257\t0.998500685590\t1.200000000000\t0.000156109511\n+485000\t75.299149742118\t0.998174557637\t1.200000000000\t0.000177124253\n+486000\t80.676043504302\t0.998160484267\t1.600000000000\t0.000192134783\n+487000\t65.456290718619\t0.997731312445\t1.600000000000\t0.000192134783\n+488000\t135.605664962437\t0.998837097471\t1.400000000000\t0.000204143206\n+489000\t78.041126983216\t0.997890938542\t1.600000000000\t0.000213149524\n+490000\t73.842941938827\t0.998020155259\t1.200000000000\t0.000192134783\n+491000\t135.330452041151\t0.998884251454\t1.000000000000\t0.000195136889\n+492000\t70.441325198247\t0.997891524929\t1.000000000000\t0.000192134783\n+493000\t93.145208276513\t0.998579085962\t1.200000000000\t0.000171120041\n+494000\t93.195291870240\t0.998579645775\t1.200000000000\t0.000171120041\n+495000\t66.167995861224\t0.997615723218\t1.200000000000\t0.000204143206\n+496000\t68.869469387443\t0.998039511367\t1.200000000000\t0.000174122147\n+497000\t61.393255588548\t0.997958646123\t1.400000000000\t0.000162113723\n+498000\t64.393702971434\t0.998089554455\t1.200000000000\t0.000159111617\n+499000\t64.222140571019\t0.998102497389\t1.000000000000\t0.000157610564\n+500000\t10.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed --- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,4 +0,0 @@ -# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 -#Chromosome Start End Gene Sum of interactions Relative distance Raw target -chr1 14331000 14344000 Eya1 673.0 43000 11.20000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,4 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 14331000 14344000 Eya1 673.0 43000 11.20000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed --- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,5 +0,0 @@ -# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 -#Chromosome Start End Gene Sum of interactions Relative distance Raw target -chr1 19122000 19131000 Tfap2d 472.0 37000 10.20000 -chr1 19188000 19232000 Tfap2d 472.0 138000 23.40000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,5 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 19122000 19131000 Tfap2d 472.0 37000 10.20000 +chr1 19188000 19232000 Tfap2d 472.0 138000 23.40000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed --- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,6 +0,0 @@ -# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 -#Chromosome Start End Gene Sum of interactions Relative distance Raw target -chr1 4512000 4529000 Sox17 810.0 41000 24.80000 -chr1 4534000 4544000 Sox17 810.0 56000 7.00000 -chr1 4585000 4590000 Sox17 810.0 102000 8.00000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,6 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 4512000 4529000 Sox17 810.0 41000 24.80000 +chr1 4534000 4544000 Sox17 810.0 56000 7.00000 +chr1 4585000 4590000 Sox17 810.0 102000 8.00000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed --- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,4 +0,0 @@ -# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 -#Chromosome Start End Gene Sum of interactions Relative distance Raw target -chr1 14331000 14344000 Eya1 832.0 43000 22.80000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,4 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 14331000 14344000 Eya1 832.0 43000 22.80000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed --- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,5 +0,0 @@ -# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 -#Chromosome Start End Gene Sum of interactions Relative distance Raw target -chr1 19122000 19131000 Tfap2d 800.0 37000 15.80000 -chr1 19188000 19232000 Tfap2d 800.0 138000 115.00000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,5 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 19122000 19131000 Tfap2d 800.0 37000 15.80000 +chr1 19188000 19232000 Tfap2d 800.0 138000 115.00000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed --- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,6 +0,0 @@ -# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 -#Chromosome Start End Gene Sum of interactions Relative distance Raw target -chr1 4512000 4529000 Sox17 978.0 41000 33.20000 -chr1 4534000 4544000 Sox17 978.0 56000 13.20000 -chr1 4585000 4590000 Sox17 978.0 102000 2.40000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,6 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 4512000 4529000 Sox17 978.0 41000 33.20000 +chr1 4534000 4544000 Sox17 978.0 56000 13.20000 +chr1 4585000 4590000 Sox17 978.0 102000 2.40000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicAggregateStatistic/batch_mode_file_names.txt --- a/test-data/cHi-C/chicAggregateStatistic/batch_mode_file_names.txt Thu Feb 06 00:25:04 2020 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode_file_names.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -1,6 +1,6 @@ -FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed -MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed -FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed -MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed -FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed -MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed \ No newline at end of file +FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt +MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt +FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt +MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt +FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt +MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt \ No newline at end of file |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicAggregateStatistic/regular_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed --- a/test-data/cHi-C/chicAggregateStatistic/regular_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,4 +0,0 @@ -# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 -#Chromosome Start End Gene Sum of interactions Relative distance Raw target -chr1 14331000 14344000 Eya1 673.0 43000 11.20000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicAggregateStatistic/regular_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/regular_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,4 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 14331000 14344000 Eya1 673.0 43000 11.20000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicAggregateStatistic/regular_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed --- a/test-data/cHi-C/chicAggregateStatistic/regular_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,4 +0,0 @@ -# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 -#Chromosome Start End Gene Sum of interactions Relative distance Raw target -chr1 14331000 14344000 Eya1 832.0 43000 22.80000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicAggregateStatistic/regular_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/regular_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,4 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 14331000 14344000 Eya1 832.0 43000 22.80000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,10 +0,0 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 -# This file contains the p-values computed by chi2 test -# To test the smoothed (float) values they were rounded up to the next integer -# -# Alpha level 0.5 -# Degrees of freedom 1 -# -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 -#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,10 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,11 +0,0 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 -# This file contains the p-values computed by chi2 test -# To test the smoothed (float) values they were rounded up to the next integer -# -# Alpha level 0.5 -# Degrees of freedom 1 -# -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 -#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.17177 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,11 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.17177 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,11 +0,0 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 -# This file contains the p-values computed by chi2 test -# To test the smoothed (float) values they were rounded up to the next integer -# -# Alpha level 0.5 -# Degrees of freedom 1 -# -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 -#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.17177 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,11 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.17177 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,11 +0,0 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 -# This file contains the p-values computed by chi2 test -# To test the smoothed (float) values they were rounded up to the next integer -# -# Alpha level 0.5 -# Degrees of freedom 1 -# -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 -#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 19122000 19131000 Tfap2d 37000 472.00000 10.20000 800.00000 15.80000 0.82442 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,11 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 19122000 19131000 Tfap2d 37000 472.00000 10.20000 800.00000 15.80000 0.82442 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,11 +0,0 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 -# This file contains the p-values computed by chi2 test -# To test the smoothed (float) values they were rounded up to the next integer -# -# Alpha level 0.5 -# Degrees of freedom 1 -# -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 -#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 19188000 19232000 Tfap2d 138000 472.00000 23.40000 800.00000 115.00000 0.00000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,11 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 19188000 19232000 Tfap2d 138000 472.00000 23.40000 800.00000 115.00000 0.00000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,12 +0,0 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 -# This file contains the p-values computed by chi2 test -# To test the smoothed (float) values they were rounded up to the next integer -# -# Alpha level 0.5 -# Degrees of freedom 1 -# -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 -#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 19122000 19131000 Tfap2d 37000 472.00000 10.20000 800.00000 15.80000 0.82442 -chr1 19188000 19232000 Tfap2d 138000 472.00000 23.40000 800.00000 115.00000 0.00000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,12 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 19122000 19131000 Tfap2d 37000 472.00000 10.20000 800.00000 15.80000 0.82442 +chr1 19188000 19232000 Tfap2d 138000 472.00000 23.40000 800.00000 115.00000 0.00000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,11 +0,0 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 -# This file contains the p-values computed by chi2 test -# To test the smoothed (float) values they were rounded up to the next integer -# -# Alpha level 0.5 -# Degrees of freedom 1 -# -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 -#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 4512000 4529000 Sox17 41000 810.00000 24.80000 978.00000 33.20000 0.70171 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,11 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 4512000 4529000 Sox17 41000 810.00000 24.80000 978.00000 33.20000 0.70171 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,12 +0,0 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 -# This file contains the p-values computed by chi2 test -# To test the smoothed (float) values they were rounded up to the next integer -# -# Alpha level 0.5 -# Degrees of freedom 1 -# -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 -#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.33893 -chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.04116 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,12 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.33893 +chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.04116 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,13 +0,0 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 -# This file contains the p-values computed by chi2 test -# To test the smoothed (float) values they were rounded up to the next integer -# -# Alpha level 0.5 -# Degrees of freedom 1 -# -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 -#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 4512000 4529000 Sox17 41000 810.00000 24.80000 978.00000 33.20000 0.70171 -chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.33893 -chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.04116 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,13 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 4512000 4529000 Sox17 41000 810.00000 24.80000 978.00000 33.20000 0.70171 +chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.33893 +chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.04116 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,10 +0,0 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 -# This file contains the p-values computed by fisher test -# To test the smoothed (float) values they were rounded up to the next integer -# -# Alpha level 0.5 -# Degrees of freedom 1 -# -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 -#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,10 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,11 +0,0 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 -# This file contains the p-values computed by fisher test -# To test the smoothed (float) values they were rounded up to the next integer -# -# Alpha level 0.5 -# Degrees of freedom 1 -# -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 -#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.23380 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,11 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.23380 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,11 +0,0 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 -# This file contains the p-values computed by fisher test -# To test the smoothed (float) values they were rounded up to the next integer -# -# Alpha level 0.5 -# Degrees of freedom 1 -# -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 -#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.23380 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,11 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.23380 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,11 +0,0 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 -# This file contains the p-values computed by fisher test -# To test the smoothed (float) values they were rounded up to the next integer -# -# Alpha level 0.5 -# Degrees of freedom 1 -# -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 -#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 19122000 19131000 Tfap2d 37000 472.00000 10.20000 800.00000 15.80000 0.69206 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,11 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 19122000 19131000 Tfap2d 37000 472.00000 10.20000 800.00000 15.80000 0.69206 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,11 +0,0 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 -# This file contains the p-values computed by fisher test -# To test the smoothed (float) values they were rounded up to the next integer -# -# Alpha level 0.5 -# Degrees of freedom 1 -# -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 -#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 19188000 19232000 Tfap2d 138000 472.00000 23.40000 800.00000 115.00000 0.00000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,11 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 19188000 19232000 Tfap2d 138000 472.00000 23.40000 800.00000 115.00000 0.00000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,12 +0,0 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 -# This file contains the p-values computed by fisher test -# To test the smoothed (float) values they were rounded up to the next integer -# -# Alpha level 0.5 -# Degrees of freedom 1 -# -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 -#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 19122000 19131000 Tfap2d 37000 472.00000 10.20000 800.00000 15.80000 0.69206 -chr1 19188000 19232000 Tfap2d 138000 472.00000 23.40000 800.00000 115.00000 0.00000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,12 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 19122000 19131000 Tfap2d 37000 472.00000 10.20000 800.00000 15.80000 0.69206 +chr1 19188000 19232000 Tfap2d 138000 472.00000 23.40000 800.00000 115.00000 0.00000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,11 +0,0 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 -# This file contains the p-values computed by fisher test -# To test the smoothed (float) values they were rounded up to the next integer -# -# Alpha level 0.5 -# Degrees of freedom 1 -# -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 -#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 4512000 4529000 Sox17 41000 810.00000 24.80000 978.00000 33.20000 0.69177 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,11 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 4512000 4529000 Sox17 41000 810.00000 24.80000 978.00000 33.20000 0.69177 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,12 +0,0 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 -# This file contains the p-values computed by fisher test -# To test the smoothed (float) values they were rounded up to the next integer -# -# Alpha level 0.5 -# Degrees of freedom 1 -# -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 -#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.37830 -chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.12513 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,12 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.37830 +chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.12513 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,13 +0,0 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 -# This file contains the p-values computed by fisher test -# To test the smoothed (float) values they were rounded up to the next integer -# -# Alpha level 0.5 -# Degrees of freedom 1 -# -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 -#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 4512000 4529000 Sox17 41000 810.00000 24.80000 978.00000 33.20000 0.69177 -chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.37830 -chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.12513 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,13 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 4512000 4529000 Sox17 41000 810.00000 24.80000 978.00000 33.20000 0.69177 +chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.37830 +chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.12513 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed --- a/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,10 +0,0 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 -# This file contains the p-values computed by fisher test -# To test the smoothed (float) values they were rounded up to the next integer -# -# Alpha level 0.5 -# Degrees of freedom 1 -# -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 -#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,10 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed --- a/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,11 +0,0 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 -# This file contains the p-values computed by fisher test -# To test the smoothed (float) values they were rounded up to the next integer -# -# Alpha level 0.5 -# Degrees of freedom 1 -# -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 -#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.23380 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,11 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.23380 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed --- a/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,11 +0,0 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 -# This file contains the p-values computed by fisher test -# To test the smoothed (float) values they were rounded up to the next integer -# -# Alpha level 0.5 -# Degrees of freedom 1 -# -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 -#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.23380 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,11 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.23380 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicDifferentialTest/rejectedFilesList.txt --- a/test-data/cHi-C/chicDifferentialTest/rejectedFilesList.txt Thu Feb 06 00:25:04 2020 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/rejectedFilesList.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -1,3 +1,3 @@ -FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed -FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed -FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed \ No newline at end of file +FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.txt +FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt +FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.txt \ No newline at end of file |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,6 +0,0 @@ -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 -#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target -chr1 14274000 14278000 Eya1 673.0 -26000 0.00832095096400000019 0.00283251424532149354 7.81112575817000021061 5.59999999999999964473 -chr1 14296000 14298000 Eya1 673.0 -3000 0.05794947993999999963 0.00000000000000000000 3.78135593591500018817 39.00000000000000000000 -chr1 14314000 14316000 Eya1 673.0 14000 0.01515601783000000008 0.00001082770154392509 3.19033393500999995496 10.19999999999999928946 -chr1 14317000 14319000 Eya1 673.0 17000 0.01456166419000000031 0.00008828123932902443 3.51709033858399999772 9.80000000000000071054 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,6 @@ +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 14274000 14278000 Eya1 673.0 -26000 0.00832095096400000019 0.00283251424532149354 7.81112575817000021061 5.59999999999999964473 +chr1 14296000 14298000 Eya1 673.0 -3000 0.05794947993999999963 0.00000000000000000000 3.78135593591500018817 39.00000000000000000000 +chr1 14314000 14316000 Eya1 673.0 14000 0.01515601783000000008 0.00001082770154392509 3.19033393500999995496 10.19999999999999928946 +chr1 14317000 14319000 Eya1 673.0 17000 0.01456166419000000031 0.00008828123932902443 3.51709033858399999772 9.80000000000000071054 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_1_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_1_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,8 +0,0 @@ -# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 -# /tmp/output_target_8dty7wuh/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed -# Mode: x-fold background with 1.5 -# Used p-value: 0.2 -# -chr1 14274000 14278000 -chr1 14296000 14298000 -chr1 14314000 14319000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_1_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_1_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,8 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 +# /tmp/output_target_8dty7wuh/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed +# Mode: x-fold background with 1.5 +# Used p-value: 0.2 +# +chr1 14274000 14278000 +chr1 14296000 14298000 +chr1 14314000 14319000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_2/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_2/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,8 +0,0 @@ -# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 -#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target -chr1 14274000 14279000 Eya1 673.0 -26000 0.01040118870499999980 0.00284160000885891328 9.15400589712000112286 7.00000000000000000000 -chr1 14285000 14303000 Eya1 673.0 -1000 0.50282317979099999672 0.00136523720299208673 11.07298757284899970443 338.40000000000003410605 -chr1 14304000 14308000 Eya1 673.0 4000 0.05438335809800000364 0.04630738638109899163 4.54925916911999994596 36.60000000000000142109 -chr1 14310000 14322000 Eya1 673.0 11000 0.08142644873500000380 0.00000295000019367997 16.90046348151199850918 54.79999999999999715783 -chr1 14361000 14395000 Eya1 673.0 61000 0.01872213967299999823 0.00000368259652272496 14.85031269307799917101 12.60000000000000142109 -chr1 14491000 14500000 Eya1 673.0 199000 0.02622585438099999874 0.00000000000000932587 49.39210160776001146132 17.64999999999999857891 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_2/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_2/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,8 @@ +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 14274000 14279000 Eya1 673.0 -26000 0.01040118870499999980 0.00284160000885891328 9.15400589712000112286 7.00000000000000000000 +chr1 14285000 14303000 Eya1 673.0 -1000 0.50282317979099999672 0.00136523720299208673 11.07298757284899970443 338.40000000000003410605 +chr1 14304000 14308000 Eya1 673.0 4000 0.05438335809800000364 0.04630738638109899163 4.54925916911999994596 36.60000000000000142109 +chr1 14310000 14322000 Eya1 673.0 11000 0.08142644873500000380 0.00000295000019367997 16.90046348151199850918 54.79999999999999715783 +chr1 14361000 14395000 Eya1 673.0 61000 0.01872213967299999823 0.00000368259652272496 14.85031269307799917101 12.60000000000000142109 +chr1 14491000 14500000 Eya1 673.0 199000 0.02622585438099999874 0.00000000000000932587 49.39210160776001146132 17.64999999999999857891 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_2_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_2_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,10 +0,0 @@ -# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev -# targetFolder/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed -# Mode: loose p-value with 0.5 -# Used p-value: 0.2 -# -chr1 14274000 14279000 -chr1 14285000 14308000 -chr1 14310000 14322000 -chr1 14361000 14395000 -chr1 14491000 14500000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_2_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_2_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,10 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev +# targetFolder/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed +# Mode: loose p-value with 0.5 +# Used p-value: 0.2 +# +chr1 14274000 14279000 +chr1 14285000 14308000 +chr1 14310000 14322000 +chr1 14361000 14395000 +chr1 14491000 14500000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,6 +0,0 @@ -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 -#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target -chr1 14274000 14278000 Eya1 673.0 -26000 0.00832095096400000019 0.00283251424532149354 7.81112575817000021061 5.59999999999999964473 -chr1 14296000 14298000 Eya1 673.0 -3000 0.05794947993999999963 0.00000000000000000000 3.78135593591500018817 39.00000000000000000000 -chr1 14314000 14316000 Eya1 673.0 14000 0.01515601783000000008 0.00001082770154392509 3.19033393500999995496 10.19999999999999928946 -chr1 14317000 14319000 Eya1 673.0 17000 0.01456166419000000031 0.00008828123932902443 3.51709033858399999772 9.80000000000000071054 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,6 @@ +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 14274000 14278000 Eya1 673.0 -26000 0.00832095096400000019 0.00283251424532149354 7.81112575817000021061 5.59999999999999964473 +chr1 14296000 14298000 Eya1 673.0 -3000 0.05794947993999999963 0.00000000000000000000 3.78135593591500018817 39.00000000000000000000 +chr1 14314000 14316000 Eya1 673.0 14000 0.01515601783000000008 0.00001082770154392509 3.19033393500999995496 10.19999999999999928946 +chr1 14317000 14319000 Eya1 673.0 17000 0.01456166419000000031 0.00008828123932902443 3.51709033858399999772 9.80000000000000071054 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,3 +0,0 @@ -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 -#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target -chr1 14295000 14298000 Eya1 832.0 -3000 0.05985576923100000002 0.00000000000000000000 4.79015312599299925012 49.79999999999999715783 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,3 @@ +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 14295000 14298000 Eya1 832.0 -3000 0.05985576923100000002 0.00000000000000000000 4.79015312599299925012 49.79999999999999715783 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_3_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_3_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,8 +0,0 @@ -# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 -# /tmp/output_target_dodw19_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed -# Mode: x-fold background with 1.5 -# Used p-value: 0.2 -# -chr1 14274000 14278000 -chr1 14296000 14298000 -chr1 14314000 14319000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_3_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_3_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,8 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 +# /tmp/output_target_dodw19_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed +# Mode: x-fold background with 1.5 +# Used p-value: 0.2 +# +chr1 14274000 14278000 +chr1 14296000 14298000 +chr1 14314000 14319000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_3_target/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_3_target/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,6 +0,0 @@ -# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 -# /tmp/output_target_dodw19_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed -# Mode: x-fold background with 1.5 -# Used p-value: 0.2 -# -chr1 14295000 14298000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_3_target/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_3_target/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,6 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 +# /tmp/output_target_dodw19_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed +# Mode: x-fold background with 1.5 +# Used p-value: 0.2 +# +chr1 14295000 14298000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,6 +0,0 @@ -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 -#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target -chr1 14274000 14278000 Eya1 673.0 -26000 0.00832095096400000019 0.00283251424532149354 7.81112575817000021061 5.59999999999999964473 -chr1 14296000 14298000 Eya1 673.0 -3000 0.05794947993999999963 0.00000000000000000000 3.78135593591500018817 39.00000000000000000000 -chr1 14314000 14316000 Eya1 673.0 14000 0.01515601783000000008 0.00001082770154392509 3.19033393500999995496 10.19999999999999928946 -chr1 14317000 14319000 Eya1 673.0 17000 0.01456166419000000031 0.00008828123932902443 3.51709033858399999772 9.80000000000000071054 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,6 @@ +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 14274000 14278000 Eya1 673.0 -26000 0.00832095096400000019 0.00283251424532149354 7.81112575817000021061 5.59999999999999964473 +chr1 14296000 14298000 Eya1 673.0 -3000 0.05794947993999999963 0.00000000000000000000 3.78135593591500018817 39.00000000000000000000 +chr1 14314000 14316000 Eya1 673.0 14000 0.01515601783000000008 0.00001082770154392509 3.19033393500999995496 10.19999999999999928946 +chr1 14317000 14319000 Eya1 673.0 17000 0.01456166419000000031 0.00008828123932902443 3.51709033858399999772 9.80000000000000071054 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,8 +0,0 @@ -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 -#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target -chr1 19089000 19091000 Tfap2d 472.0 -3000 0.06101694915199999680 0.00000000000000000000 4.06818820852600016025 28.80000000000000071054 -chr1 19104000 19106000 Tfap2d 472.0 11000 0.02245762711799999950 0.00000021753312740014 3.62722049649999966903 10.59999999999999964473 -chr1 19109000 19114000 Tfap2d 472.0 18000 0.03940677966200000631 0.00000013791919284412 9.61739201792699915927 18.60000000000000142109 -chr1 19125000 19129000 Tfap2d 472.0 33000 0.01652542372999999884 0.19640940181488197869 7.28507499155399962376 7.79999999999999982236 -chr1 19227000 19233000 Tfap2d 472.0 137000 0.01186440677899999914 0.19195463066672580066 14.41899403645599875290 5.59999999999999964473 -chr1 19097000 19098000 Tfap2d 472.0 4000 0.02542372881399999895 0.00000000000002398082 1.62514514601700010843 12.00000000000000000000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,8 @@ +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 19089000 19091000 Tfap2d 472.0 -3000 0.06101694915199999680 0.00000000000000000000 4.06818820852600016025 28.80000000000000071054 +chr1 19104000 19106000 Tfap2d 472.0 11000 0.02245762711799999950 0.00000021753312740014 3.62722049649999966903 10.59999999999999964473 +chr1 19109000 19114000 Tfap2d 472.0 18000 0.03940677966200000631 0.00000013791919284412 9.61739201792699915927 18.60000000000000142109 +chr1 19125000 19129000 Tfap2d 472.0 33000 0.01652542372999999884 0.19640940181488197869 7.28507499155399962376 7.79999999999999982236 +chr1 19227000 19233000 Tfap2d 472.0 137000 0.01186440677899999914 0.19195463066672580066 14.41899403645599875290 5.59999999999999964473 +chr1 19097000 19098000 Tfap2d 472.0 4000 0.02542372881399999895 0.00000000000002398082 1.62514514601700010843 12.00000000000000000000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,7 +0,0 @@ -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 -#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target -chr1 4509000 4515000 Sox17 810.0 23000 0.03432098765399999724 0.00000000034537894766 11.55191083898800030738 27.80000000000000071054 -chr1 4585000 4590000 Sox17 810.0 98000 0.00987654320999999807 0.08235176084316242484 8.98479195802099894763 8.00000000000000000000 -chr1 4484000 4485000 Sox17 810.0 -3000 0.03283950617300000069 0.00000000000000000000 1.52393745982299999575 26.60000000000000142109 -chr1 4499000 4500000 Sox17 810.0 12000 0.00987654320999999981 0.00000762924143549171 1.65903762227799989049 8.00000000000000000000 -chr1 4501000 4502000 Sox17 810.0 14000 0.00765432098799999957 0.00092861255189025105 1.57677828943600006895 6.20000000000000017764 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,7 @@ +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 4509000 4515000 Sox17 810.0 23000 0.03432098765399999724 0.00000000034537894766 11.55191083898800030738 27.80000000000000071054 +chr1 4585000 4590000 Sox17 810.0 98000 0.00987654320999999807 0.08235176084316242484 8.98479195802099894763 8.00000000000000000000 +chr1 4484000 4485000 Sox17 810.0 -3000 0.03283950617300000069 0.00000000000000000000 1.52393745982299999575 26.60000000000000142109 +chr1 4499000 4500000 Sox17 810.0 12000 0.00987654320999999981 0.00000762924143549171 1.65903762227799989049 8.00000000000000000000 +chr1 4501000 4502000 Sox17 810.0 14000 0.00765432098799999957 0.00092861255189025105 1.57677828943600006895 6.20000000000000017764 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_4_significant_files.txt --- a/test-data/cHi-C/chicSignificantInteractions/output_4_significant_files.txt Thu Feb 06 00:25:04 2020 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4_significant_files.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -1,3 +1,3 @@ -FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed -FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed -FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed \ No newline at end of file +FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt +FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt +FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt \ No newline at end of file |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,8 +0,0 @@ -# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 -# /tmp/output_target_83sqy1lg/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed -# Mode: x-fold background with 1.5 -# Used p-value: 0.2 -# -chr1 14274000 14278000 -chr1 14296000 14298000 -chr1 14314000 14319000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,8 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 +# /tmp/output_target_83sqy1lg/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed +# Mode: x-fold background with 1.5 +# Used p-value: 0.2 +# +chr1 14274000 14278000 +chr1 14296000 14298000 +chr1 14314000 14319000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,11 +0,0 @@ -# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 -# /tmp/output_target_83sqy1lg/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed -# Mode: x-fold background with 1.5 -# Used p-value: 0.2 -# -chr1 19089000 19091000 -chr1 19097000 19098000 -chr1 19104000 19106000 -chr1 19109000 19114000 -chr1 19125000 19129000 -chr1 19227000 19233000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,11 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 +# /tmp/output_target_83sqy1lg/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed +# Mode: x-fold background with 1.5 +# Used p-value: 0.2 +# +chr1 19089000 19091000 +chr1 19097000 19098000 +chr1 19104000 19106000 +chr1 19109000 19114000 +chr1 19125000 19129000 +chr1 19227000 19233000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,9 +0,0 @@ -# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 -# /tmp/output_target_83sqy1lg/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed -# Mode: x-fold background with 1.5 -# Used p-value: 0.2 -# -chr1 4484000 4485000 -chr1 4499000 4502000 -chr1 4509000 4515000 -chr1 4585000 4590000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,9 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 +# /tmp/output_target_83sqy1lg/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed +# Mode: x-fold background with 1.5 +# Used p-value: 0.2 +# +chr1 4484000 4485000 +chr1 4499000 4502000 +chr1 4509000 4515000 +chr1 4585000 4590000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_4_target_list.txt --- a/test-data/cHi-C/chicSignificantInteractions/output_4_target_list.txt Thu Feb 06 00:25:04 2020 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target_list.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -1,3 +1,3 @@ -FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed -FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed -FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed \ No newline at end of file +FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.txt +FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt +FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.txt \ No newline at end of file |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,2 +0,0 @@ -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 -#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,2 @@ +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,3 +0,0 @@ -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 -#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target -chr1 19124000 19130000 Tfap2d 472.0 33000 0.02076271186600000054 0.10353729660313626404 9.16165897065000045529 9.80000000000000071054 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,3 @@ +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 19124000 19130000 Tfap2d 472.0 33000 0.02076271186600000054 0.10353729660313626404 9.16165897065000045529 9.80000000000000071054 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,3 +0,0 @@ -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 -#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target -chr1 4585000 4590000 Sox17 810.0 98000 0.00987654320999999807 0.08235176084316242484 8.98479195802099894763 8.00000000000000000000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,3 @@ +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 4585000 4590000 Sox17 810.0 98000 0.00987654320999999807 0.08235176084316242484 8.98479195802099894763 8.00000000000000000000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,3 +0,0 @@ -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 -#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target -chr1 14331000 14344000 Eya1 832.0 39000 0.02740384615299999715 0.04109483942319203109 12.88838410144700219462 22.80000000000000071054 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,3 @@ +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 14331000 14344000 Eya1 832.0 39000 0.02740384615299999715 0.04109483942319203109 12.88838410144700219462 22.80000000000000071054 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,4 +0,0 @@ -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 -#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target -chr1 19122000 19131000 Tfap2d 800.0 33000 0.01975000000000000019 0.01215875106169517217 8.65480483946599932210 15.80000000000000071054 -chr1 19188000 19232000 Tfap2d 800.0 105000 0.14375000000000007216 0.00725408648394210154 156.86467065896297867766 114.99999999999997157829 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,4 @@ +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 19122000 19131000 Tfap2d 800.0 33000 0.01975000000000000019 0.01215875106169517217 8.65480483946599932210 15.80000000000000071054 +chr1 19188000 19232000 Tfap2d 800.0 105000 0.14375000000000007216 0.00725408648394210154 156.86467065896297867766 114.99999999999997157829 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,4 +0,0 @@ -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 -#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target -chr1 4512000 4529000 Sox17 978.0 37000 0.03394683026800000142 0.03218197542328149474 15.11463155973700089874 33.19999999999999573674 -chr1 4534000 4544000 Sox17 978.0 52000 0.01349693251800000021 0.00199753407269609440 8.80743474809099957668 13.19999999999999928946 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,4 @@ +# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 4512000 4529000 Sox17 978.0 37000 0.03394683026800000142 0.03218197542328149474 15.11463155973700089874 33.19999999999999573674 +chr1 4534000 4544000 Sox17 978.0 52000 0.01349693251800000021 0.00199753407269609440 8.80743474809099957668 13.19999999999999928946 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_5_significant_files.txt --- a/test-data/cHi-C/chicSignificantInteractions/output_5_significant_files.txt Thu Feb 06 00:25:04 2020 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5_significant_files.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -1,6 +1,6 @@ -FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed -MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed -FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed -MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed -FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed -MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed \ No newline at end of file +FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt +MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt +FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt +MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt +FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt +MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt \ No newline at end of file |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,6 +0,0 @@ -# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 -# /tmp/output_target_5cv5fzp2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed -# Mode: loose p-value with 0.5 -# Used p-value: 0.2 -# -chr1 14331000 14344000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,6 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 +# /tmp/output_target_5cv5fzp2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed +# Mode: loose p-value with 0.5 +# Used p-value: 0.2 +# +chr1 14331000 14344000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,7 +0,0 @@ -# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 -# /tmp/output_target_5cv5fzp2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed -# Mode: loose p-value with 0.5 -# Used p-value: 0.2 -# -chr1 19122000 19131000 -chr1 19188000 19232000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,7 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 +# /tmp/output_target_5cv5fzp2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed +# Mode: loose p-value with 0.5 +# Used p-value: 0.2 +# +chr1 19122000 19131000 +chr1 19188000 19232000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed --- a/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,8 +0,0 @@ -# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 -# /tmp/output_target_5cv5fzp2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed -# Mode: loose p-value with 0.5 -# Used p-value: 0.2 -# -chr1 4512000 4529000 -chr1 4534000 4544000 -chr1 4585000 4590000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -0,0 +1,8 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 +# /tmp/output_target_5cv5fzp2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed +# Mode: loose p-value with 0.5 +# Used p-value: 0.2 +# +chr1 4512000 4529000 +chr1 4534000 4544000 +chr1 4585000 4590000 |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicSignificantInteractions/output_5_target_list.txt --- a/test-data/cHi-C/chicSignificantInteractions/output_5_target_list.txt Thu Feb 06 00:25:04 2020 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target_list.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -1,3 +1,3 @@ -FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed -FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed -FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed \ No newline at end of file +FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.txt +FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt +FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.txt \ No newline at end of file |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/fileNames_one_matrix.txt --- a/test-data/cHi-C/chicViewpoint/fileNames_one_matrix.txt Thu Feb 06 00:25:04 2020 +0000 +++ b/test-data/cHi-C/chicViewpoint/fileNames_one_matrix.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -1,3 +1,3 @@ -FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed -FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed -FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed +FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt +FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt +FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/fileNames_two_matrices.txt --- a/test-data/cHi-C/chicViewpoint/fileNames_two_matrices.txt Thu Feb 06 00:25:04 2020 +0000 +++ b/test-data/cHi-C/chicViewpoint/fileNames_two_matrices.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| @@ -1,6 +1,6 @@ -FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed -MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed -FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed -MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed -FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed -MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed +FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt +MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt +FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt +MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt +FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt +MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed --- a/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 673.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t14100000\t14101000\tEya1\t673.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14101000\t14102000\tEya1\t673.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14102000\t14103000\tEya1\t673.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14103000\t14104000\tEya1\t673.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n-chr1\t14104000\t14105000\tEya1\t673.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14105000\t14106000\tEya1\t673.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14106000\t14107000\tEya1\t673.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14107000\t14108000\tEya1\t673.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14108000\t14109000\tEya1\t673.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14109000\t14110000\tEya1\t673.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14110000\t14111000\tEya1\t673.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14111000\t14112000\tEya1\t673.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14112000\t14113000\tEya1\t673.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14113000\t14114000\tEya1\t673.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14114000\t14115000\tEya1\t673.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14115000\t14116000\tEya1\t673.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14116000\t14117000\tEya1\t673.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14117000\t14118000\tEya1\t673.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14118000\t14119000\tEya1\t673.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14119000\t14120000\tEya1\t673.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14120000\t14121000\tEya1\t673.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14121000\t14122000\tEya1\t673.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14122000\t14123000\tEya1\t673.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14123000\t14124000\tEya1\t673.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14124000\t14125000\tEya1\t673.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14125000\t14126000\tEya1\t673.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14126000\t14127000\tEya1\t673.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14127000\t14128000\tEya1\t673.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14128000\t14129000\tEya1\t673.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14129000\t14130000\tEya1\t673.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14130000\t14131000\tEya1\t673.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14131000\t14132000\tEya1\t673.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14132000\t14133000\tEya1\t673.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14133000\t14134000\tEya1\t673.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14134000\t14135000\tEya1\t673.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t141350"..b'44260\t0.800000000000\n-chr1\t14462000\t14463000\tEya1\t673.0\t162000\t0.001188707281\t0.998003530647\t1.616154290340\t0.800000000000\n-chr1\t14463000\t14464000\tEya1\t673.0\t163000\t0.000594353640\t0.999352809734\t0.821489212945\t0.400000000000\n-chr1\t14464000\t14465000\tEya1\t673.0\t164000\t0.000594353640\t0.999664588125\t0.857051516792\t0.400000000000\n-chr1\t14465000\t14466000\tEya1\t673.0\t165000\t0.000000000000\t0.999918251505\t0.000000000000\t0.000000000000\n-chr1\t14466000\t14467000\tEya1\t673.0\t166000\t0.000000000000\t0.989304103068\t0.000000000000\t0.000000000000\n-chr1\t14467000\t14468000\tEya1\t673.0\t167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14468000\t14469000\tEya1\t673.0\t168000\t0.000000000000\t0.999999999417\t0.000000000000\t0.000000000000\n-chr1\t14469000\t14470000\tEya1\t673.0\t169000\t0.000000000000\t0.997208984795\t0.000000000000\t0.000000000000\n-chr1\t14470000\t14471000\tEya1\t673.0\t170000\t0.000000000000\t0.999780212263\t0.000000000000\t0.000000000000\n-chr1\t14471000\t14472000\tEya1\t673.0\t171000\t0.000000000000\t0.981475867334\t0.000000000000\t0.000000000000\n-chr1\t14472000\t14473000\tEya1\t673.0\t172000\t0.000000000000\t0.944032684304\t0.000000000000\t0.000000000000\n-chr1\t14473000\t14474000\tEya1\t673.0\t173000\t0.000000000000\t0.999936032663\t0.000000000000\t0.000000000000\n-chr1\t14474000\t14475000\tEya1\t673.0\t174000\t0.000000000000\t0.999594131731\t0.000000000000\t0.000000000000\n-chr1\t14475000\t14476000\tEya1\t673.0\t175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14476000\t14477000\tEya1\t673.0\t176000\t0.000297176820\t1.000000000000\t0.421231702882\t0.200000000000\n-chr1\t14477000\t14478000\tEya1\t673.0\t177000\t0.000297176820\t1.000000000000\t0.449952046478\t0.200000000000\n-chr1\t14478000\t14479000\tEya1\t673.0\t178000\t0.000594353640\t1.000000000000\t0.933862738240\t0.400000000000\n-chr1\t14479000\t14480000\tEya1\t673.0\t179000\t0.000594353640\t1.000000000000\t0.951821637197\t0.400000000000\n-chr1\t14480000\t14481000\tEya1\t673.0\t180000\t0.001485884101\t0.000000000000\t2.512422592521\t1.000000000000\n-chr1\t14481000\t14482000\tEya1\t673.0\t181000\t0.001188707281\t1.000000000000\t2.020192860178\t0.800000000000\n-chr1\t14482000\t14483000\tEya1\t673.0\t182000\t0.001188707281\t1.000000000000\t2.128805380321\t0.800000000000\n-chr1\t14483000\t14484000\tEya1\t673.0\t183000\t0.001783060921\t0.000000000000\t3.093420317586\t1.200000000000\n-chr1\t14484000\t14485000\tEya1\t673.0\t184000\t0.002080237741\t0.000000000000\t3.380127570538\t1.400000000000\n-chr1\t14485000\t14486000\tEya1\t673.0\t185000\t0.001188707281\t1.000000000000\t1.903643274393\t0.800000000000\n-chr1\t14486000\t14487000\tEya1\t673.0\t186000\t0.001188707281\t1.000000000000\t2.106158514412\t0.800000000000\n-chr1\t14487000\t14488000\tEya1\t673.0\t187000\t0.001188707281\t1.000000000000\t2.140312436513\t0.800000000000\n-chr1\t14488000\t14489000\tEya1\t673.0\t188000\t0.000594353640\t1.000000000000\t1.058710697124\t0.400000000000\n-chr1\t14489000\t14490000\tEya1\t673.0\t189000\t0.000297176820\t1.000000000000\t0.575520059550\t0.200000000000\n-chr1\t14490000\t14491000\tEya1\t673.0\t190000\t0.000297176820\t1.000000000000\t0.578885673960\t0.200000000000\n-chr1\t14491000\t14492000\tEya1\t673.0\t191000\t0.002080237741\t0.000000000000\t3.849589730333\t1.400000000000\n-chr1\t14492000\t14493000\tEya1\t673.0\t192000\t0.003268945022\t0.000000000000\t5.982878858272\t2.200000000000\n-chr1\t14493000\t14494000\tEya1\t673.0\t193000\t0.002971768202\t0.000000000000\t5.892229182196\t2.000000000000\n-chr1\t14494000\t14495000\tEya1\t673.0\t194000\t0.003268945022\t0.000000000000\t6.294126893758\t2.200000000000\n-chr1\t14495000\t14496000\tEya1\t673.0\t195000\t0.003268945022\t0.000000000000\t6.680269651133\t2.200000000000\n-chr1\t14496000\t14497000\tEya1\t673.0\t196000\t0.002971768202\t0.000000000000\t6.072972410121\t2.000000000000\n-chr1\t14497000\t14498000\tEya1\t673.0\t197000\t0.002080237741\t0.000000000000\t3.937080406684\t1.400000000000\n-chr1\t14498000\t14499000\tEya1\t673.0\t198000\t0.002971768202\t0.000000000000\t4.852424033528\t2.000000000000\n-chr1\t14499000\t14500000\tEya1\t673.0\t199000\t0.003343239227\t0.000000000000\t5.830530441735\t2.250000000000\n-chr1\t14500000\t14501000\tEya1\t673.0\t200000\t0.004457652303\t0.000000000000\t7.575723225668\t3.000000000000\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 673.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t14100000\t14101000\tEya1\t673.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14101000\t14102000\tEya1\t673.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14102000\t14103000\tEya1\t673.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14103000\t14104000\tEya1\t673.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t14104000\t14105000\tEya1\t673.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14105000\t14106000\tEya1\t673.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14106000\t14107000\tEya1\t673.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14107000\t14108000\tEya1\t673.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14108000\t14109000\tEya1\t673.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14109000\t14110000\tEya1\t673.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14110000\t14111000\tEya1\t673.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14111000\t14112000\tEya1\t673.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14112000\t14113000\tEya1\t673.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14113000\t14114000\tEya1\t673.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14114000\t14115000\tEya1\t673.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14115000\t14116000\tEya1\t673.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14116000\t14117000\tEya1\t673.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14117000\t14118000\tEya1\t673.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14118000\t14119000\tEya1\t673.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14119000\t14120000\tEya1\t673.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14120000\t14121000\tEya1\t673.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14121000\t14122000\tEya1\t673.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14122000\t14123000\tEya1\t673.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14123000\t14124000\tEya1\t673.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14124000\t14125000\tEya1\t673.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14125000\t14126000\tEya1\t673.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14126000\t14127000\tEya1\t673.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14127000\t14128000\tEya1\t673.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14128000\t14129000\tEya1\t673.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14129000\t14130000\tEya1\t673.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14130000\t14131000\tEya1\t673.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14131000\t14132000\tEya1\t673.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14132000\t14133000\tEya1\t673.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14133000\t14134000\tEya1\t673.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14134000\t14135000\tEya1\t673.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t141350"..b'44260\t0.800000000000\n+chr1\t14462000\t14463000\tEya1\t673.0\t162000\t0.001188707281\t0.998003530647\t1.616154290340\t0.800000000000\n+chr1\t14463000\t14464000\tEya1\t673.0\t163000\t0.000594353640\t0.999352809734\t0.821489212945\t0.400000000000\n+chr1\t14464000\t14465000\tEya1\t673.0\t164000\t0.000594353640\t0.999664588125\t0.857051516792\t0.400000000000\n+chr1\t14465000\t14466000\tEya1\t673.0\t165000\t0.000000000000\t0.999918251505\t0.000000000000\t0.000000000000\n+chr1\t14466000\t14467000\tEya1\t673.0\t166000\t0.000000000000\t0.989304103068\t0.000000000000\t0.000000000000\n+chr1\t14467000\t14468000\tEya1\t673.0\t167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14468000\t14469000\tEya1\t673.0\t168000\t0.000000000000\t0.999999999417\t0.000000000000\t0.000000000000\n+chr1\t14469000\t14470000\tEya1\t673.0\t169000\t0.000000000000\t0.997208984795\t0.000000000000\t0.000000000000\n+chr1\t14470000\t14471000\tEya1\t673.0\t170000\t0.000000000000\t0.999780212263\t0.000000000000\t0.000000000000\n+chr1\t14471000\t14472000\tEya1\t673.0\t171000\t0.000000000000\t0.981475867334\t0.000000000000\t0.000000000000\n+chr1\t14472000\t14473000\tEya1\t673.0\t172000\t0.000000000000\t0.944032684304\t0.000000000000\t0.000000000000\n+chr1\t14473000\t14474000\tEya1\t673.0\t173000\t0.000000000000\t0.999936032663\t0.000000000000\t0.000000000000\n+chr1\t14474000\t14475000\tEya1\t673.0\t174000\t0.000000000000\t0.999594131731\t0.000000000000\t0.000000000000\n+chr1\t14475000\t14476000\tEya1\t673.0\t175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14476000\t14477000\tEya1\t673.0\t176000\t0.000297176820\t1.000000000000\t0.421231702882\t0.200000000000\n+chr1\t14477000\t14478000\tEya1\t673.0\t177000\t0.000297176820\t1.000000000000\t0.449952046478\t0.200000000000\n+chr1\t14478000\t14479000\tEya1\t673.0\t178000\t0.000594353640\t1.000000000000\t0.933862738240\t0.400000000000\n+chr1\t14479000\t14480000\tEya1\t673.0\t179000\t0.000594353640\t1.000000000000\t0.951821637197\t0.400000000000\n+chr1\t14480000\t14481000\tEya1\t673.0\t180000\t0.001485884101\t0.000000000000\t2.512422592521\t1.000000000000\n+chr1\t14481000\t14482000\tEya1\t673.0\t181000\t0.001188707281\t1.000000000000\t2.020192860178\t0.800000000000\n+chr1\t14482000\t14483000\tEya1\t673.0\t182000\t0.001188707281\t1.000000000000\t2.128805380321\t0.800000000000\n+chr1\t14483000\t14484000\tEya1\t673.0\t183000\t0.001783060921\t0.000000000000\t3.093420317586\t1.200000000000\n+chr1\t14484000\t14485000\tEya1\t673.0\t184000\t0.002080237741\t0.000000000000\t3.380127570538\t1.400000000000\n+chr1\t14485000\t14486000\tEya1\t673.0\t185000\t0.001188707281\t1.000000000000\t1.903643274393\t0.800000000000\n+chr1\t14486000\t14487000\tEya1\t673.0\t186000\t0.001188707281\t1.000000000000\t2.106158514412\t0.800000000000\n+chr1\t14487000\t14488000\tEya1\t673.0\t187000\t0.001188707281\t1.000000000000\t2.140312436513\t0.800000000000\n+chr1\t14488000\t14489000\tEya1\t673.0\t188000\t0.000594353640\t1.000000000000\t1.058710697124\t0.400000000000\n+chr1\t14489000\t14490000\tEya1\t673.0\t189000\t0.000297176820\t1.000000000000\t0.575520059550\t0.200000000000\n+chr1\t14490000\t14491000\tEya1\t673.0\t190000\t0.000297176820\t1.000000000000\t0.578885673960\t0.200000000000\n+chr1\t14491000\t14492000\tEya1\t673.0\t191000\t0.002080237741\t0.000000000000\t3.849589730333\t1.400000000000\n+chr1\t14492000\t14493000\tEya1\t673.0\t192000\t0.003268945022\t0.000000000000\t5.982878858272\t2.200000000000\n+chr1\t14493000\t14494000\tEya1\t673.0\t193000\t0.002971768202\t0.000000000000\t5.892229182196\t2.000000000000\n+chr1\t14494000\t14495000\tEya1\t673.0\t194000\t0.003268945022\t0.000000000000\t6.294126893758\t2.200000000000\n+chr1\t14495000\t14496000\tEya1\t673.0\t195000\t0.003268945022\t0.000000000000\t6.680269651133\t2.200000000000\n+chr1\t14496000\t14497000\tEya1\t673.0\t196000\t0.002971768202\t0.000000000000\t6.072972410121\t2.000000000000\n+chr1\t14497000\t14498000\tEya1\t673.0\t197000\t0.002080237741\t0.000000000000\t3.937080406684\t1.400000000000\n+chr1\t14498000\t14499000\tEya1\t673.0\t198000\t0.002971768202\t0.000000000000\t4.852424033528\t2.000000000000\n+chr1\t14499000\t14500000\tEya1\t673.0\t199000\t0.003343239227\t0.000000000000\t5.830530441735\t2.250000000000\n+chr1\t14500000\t14501000\tEya1\t673.0\t200000\t0.004457652303\t0.000000000000\t7.575723225668\t3.000000000000\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed --- a/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 472.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t18893000\t18894000\tTfap2d\t472.0\t-200000\t0.001412429379\t1.000000000000\t8.554173074049\t0.666666666667\n-chr1\t18894000\t18895000\tTfap2d\t472.0\t-199000\t0.001059322034\t1.000000000000\t5.040852007510\t0.500000000000\n-chr1\t18895000\t18896000\tTfap2d\t472.0\t-198000\t0.000847457627\t1.000000000000\t3.282415254892\t0.400000000000\n-chr1\t18896000\t18897000\tTfap2d\t472.0\t-197000\t0.000847457627\t0.999999994943\t3.136530131373\t0.400000000000\n-chr1\t18897000\t18898000\tTfap2d\t472.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18898000\t18899000\tTfap2d\t472.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18899000\t18900000\tTfap2d\t472.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18900000\t18901000\tTfap2d\t472.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18901000\t18902000\tTfap2d\t472.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18902000\t18903000\tTfap2d\t472.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18903000\t18904000\tTfap2d\t472.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18904000\t18905000\tTfap2d\t472.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18905000\t18906000\tTfap2d\t472.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18906000\t18907000\tTfap2d\t472.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18907000\t18908000\tTfap2d\t472.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18908000\t18909000\tTfap2d\t472.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18909000\t18910000\tTfap2d\t472.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18910000\t18911000\tTfap2d\t472.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18911000\t18912000\tTfap2d\t472.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18912000\t18913000\tTfap2d\t472.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18913000\t18914000\tTfap2d\t472.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18914000\t18915000\tTfap2d\t472.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18915000\t18916000\tTfap2d\t472.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18916000\t18917000\tTfap2d\t472.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18917000\t18918000\tTfap2d\t472.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18918000\t18919000\tTfap2d\t472.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18919000\t18920000\tTfap2d\t472.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18920000\t18921000\tTfap2d\t472.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18921000\t18922000\tTfap2d\t472.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18922000\t18923000\tTfap2d\t472.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18923000\t18924000\tTfap2d\t472.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18924000\t18925000\tTfap2d\t472.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18925000\t18926000\tTfap2d\t472.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18926000\t18927000\tTfap2d\t472.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18927000\t18928000\tTfap2d\t472.0\t-166000\t"..b'4\t0.998003530647\t2.304389486014\t0.800000000000\n-chr1\t19256000\t19257000\tTfap2d\t472.0\t163000\t0.002542372881\t0.000647190266\t3.513954917238\t1.200000000000\n-chr1\t19257000\t19258000\tTfap2d\t472.0\t164000\t0.002118644068\t0.000335411875\t3.055061815685\t1.000000000000\n-chr1\t19258000\t19259000\tTfap2d\t472.0\t165000\t0.002118644068\t0.000081748495\t3.252162579500\t1.000000000000\n-chr1\t19259000\t19260000\tTfap2d\t472.0\t166000\t0.001694915254\t0.989304103068\t2.822877120847\t0.800000000000\n-chr1\t19260000\t19261000\tTfap2d\t472.0\t167000\t0.001694915254\t1.000000000000\t2.701317818024\t0.800000000000\n-chr1\t19261000\t19262000\tTfap2d\t472.0\t168000\t0.000847457627\t0.999999999417\t1.312966101957\t0.400000000000\n-chr1\t19262000\t19263000\tTfap2d\t472.0\t169000\t0.000423728814\t0.997208984795\t0.593041411154\t0.200000000000\n-chr1\t19263000\t19264000\tTfap2d\t472.0\t170000\t0.000423728814\t0.999780212263\t0.573755512251\t0.200000000000\n-chr1\t19264000\t19265000\tTfap2d\t472.0\t171000\t0.000000000000\t0.981475867334\t0.000000000000\t0.000000000000\n-chr1\t19265000\t19266000\tTfap2d\t472.0\t172000\t0.000000000000\t0.944032684304\t0.000000000000\t0.000000000000\n-chr1\t19266000\t19267000\tTfap2d\t472.0\t173000\t0.000000000000\t0.999936032663\t0.000000000000\t0.000000000000\n-chr1\t19267000\t19268000\tTfap2d\t472.0\t174000\t0.000000000000\t0.999594131731\t0.000000000000\t0.000000000000\n-chr1\t19268000\t19269000\tTfap2d\t472.0\t175000\t0.000423728814\t1.000000000000\t0.608378689139\t0.200000000000\n-chr1\t19269000\t19270000\tTfap2d\t472.0\t176000\t0.000423728814\t1.000000000000\t0.600612152627\t0.200000000000\n-chr1\t19270000\t19271000\tTfap2d\t472.0\t177000\t0.000423728814\t1.000000000000\t0.641562981525\t0.200000000000\n-chr1\t19271000\t19272000\tTfap2d\t472.0\t178000\t0.000423728814\t1.000000000000\t0.665772905546\t0.200000000000\n-chr1\t19272000\t19273000\tTfap2d\t472.0\t179000\t0.000423728814\t1.000000000000\t0.678576230756\t0.200000000000\n-chr1\t19273000\t19274000\tTfap2d\t472.0\t180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19274000\t19275000\tTfap2d\t472.0\t181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19275000\t19276000\tTfap2d\t472.0\t182000\t0.000423728814\t1.000000000000\t0.758837934828\t0.200000000000\n-chr1\t19276000\t19277000\tTfap2d\t472.0\t183000\t0.000423728814\t1.000000000000\t0.735124249200\t0.200000000000\n-chr1\t19277000\t19278000\tTfap2d\t472.0\t184000\t0.000423728814\t1.000000000000\t0.688506614701\t0.200000000000\n-chr1\t19278000\t19279000\tTfap2d\t472.0\t185000\t0.000423728814\t1.000000000000\t0.678576230756\t0.200000000000\n-chr1\t19279000\t19280000\tTfap2d\t472.0\t186000\t0.000423728814\t1.000000000000\t0.750765190784\t0.200000000000\n-chr1\t19280000\t19281000\tTfap2d\t472.0\t187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19281000\t19282000\tTfap2d\t472.0\t188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19282000\t19283000\tTfap2d\t472.0\t189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19283000\t19284000\tTfap2d\t472.0\t190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19284000\t19285000\tTfap2d\t472.0\t191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19285000\t19286000\tTfap2d\t472.0\t192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19286000\t19287000\tTfap2d\t472.0\t193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19287000\t19288000\tTfap2d\t472.0\t194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19288000\t19289000\tTfap2d\t472.0\t195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19289000\t19290000\tTfap2d\t472.0\t196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19290000\t19291000\tTfap2d\t472.0\t197000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19291000\t19292000\tTfap2d\t472.0\t198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19292000\t19293000\tTfap2d\t472.0\t199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19293000\t19294000\tTfap2d\t472.0\t200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 472.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t18893000\t18894000\tTfap2d\t472.0\t-200000\t0.001412429379\t1.000000000000\t8.554173074049\t0.666666666667\n+chr1\t18894000\t18895000\tTfap2d\t472.0\t-199000\t0.001059322034\t1.000000000000\t5.040852007510\t0.500000000000\n+chr1\t18895000\t18896000\tTfap2d\t472.0\t-198000\t0.000847457627\t1.000000000000\t3.282415254892\t0.400000000000\n+chr1\t18896000\t18897000\tTfap2d\t472.0\t-197000\t0.000847457627\t0.999999994943\t3.136530131373\t0.400000000000\n+chr1\t18897000\t18898000\tTfap2d\t472.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18898000\t18899000\tTfap2d\t472.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18899000\t18900000\tTfap2d\t472.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18900000\t18901000\tTfap2d\t472.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18901000\t18902000\tTfap2d\t472.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18902000\t18903000\tTfap2d\t472.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18903000\t18904000\tTfap2d\t472.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18904000\t18905000\tTfap2d\t472.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18905000\t18906000\tTfap2d\t472.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18906000\t18907000\tTfap2d\t472.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18907000\t18908000\tTfap2d\t472.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18908000\t18909000\tTfap2d\t472.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18909000\t18910000\tTfap2d\t472.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18910000\t18911000\tTfap2d\t472.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18911000\t18912000\tTfap2d\t472.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18912000\t18913000\tTfap2d\t472.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18913000\t18914000\tTfap2d\t472.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18914000\t18915000\tTfap2d\t472.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18915000\t18916000\tTfap2d\t472.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18916000\t18917000\tTfap2d\t472.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18917000\t18918000\tTfap2d\t472.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18918000\t18919000\tTfap2d\t472.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18919000\t18920000\tTfap2d\t472.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18920000\t18921000\tTfap2d\t472.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18921000\t18922000\tTfap2d\t472.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18922000\t18923000\tTfap2d\t472.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18923000\t18924000\tTfap2d\t472.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18924000\t18925000\tTfap2d\t472.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18925000\t18926000\tTfap2d\t472.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18926000\t18927000\tTfap2d\t472.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18927000\t18928000\tTfap2d\t472.0\t-166000\t"..b'4\t0.998003530647\t2.304389486014\t0.800000000000\n+chr1\t19256000\t19257000\tTfap2d\t472.0\t163000\t0.002542372881\t0.000647190266\t3.513954917238\t1.200000000000\n+chr1\t19257000\t19258000\tTfap2d\t472.0\t164000\t0.002118644068\t0.000335411875\t3.055061815685\t1.000000000000\n+chr1\t19258000\t19259000\tTfap2d\t472.0\t165000\t0.002118644068\t0.000081748495\t3.252162579500\t1.000000000000\n+chr1\t19259000\t19260000\tTfap2d\t472.0\t166000\t0.001694915254\t0.989304103068\t2.822877120847\t0.800000000000\n+chr1\t19260000\t19261000\tTfap2d\t472.0\t167000\t0.001694915254\t1.000000000000\t2.701317818024\t0.800000000000\n+chr1\t19261000\t19262000\tTfap2d\t472.0\t168000\t0.000847457627\t0.999999999417\t1.312966101957\t0.400000000000\n+chr1\t19262000\t19263000\tTfap2d\t472.0\t169000\t0.000423728814\t0.997208984795\t0.593041411154\t0.200000000000\n+chr1\t19263000\t19264000\tTfap2d\t472.0\t170000\t0.000423728814\t0.999780212263\t0.573755512251\t0.200000000000\n+chr1\t19264000\t19265000\tTfap2d\t472.0\t171000\t0.000000000000\t0.981475867334\t0.000000000000\t0.000000000000\n+chr1\t19265000\t19266000\tTfap2d\t472.0\t172000\t0.000000000000\t0.944032684304\t0.000000000000\t0.000000000000\n+chr1\t19266000\t19267000\tTfap2d\t472.0\t173000\t0.000000000000\t0.999936032663\t0.000000000000\t0.000000000000\n+chr1\t19267000\t19268000\tTfap2d\t472.0\t174000\t0.000000000000\t0.999594131731\t0.000000000000\t0.000000000000\n+chr1\t19268000\t19269000\tTfap2d\t472.0\t175000\t0.000423728814\t1.000000000000\t0.608378689139\t0.200000000000\n+chr1\t19269000\t19270000\tTfap2d\t472.0\t176000\t0.000423728814\t1.000000000000\t0.600612152627\t0.200000000000\n+chr1\t19270000\t19271000\tTfap2d\t472.0\t177000\t0.000423728814\t1.000000000000\t0.641562981525\t0.200000000000\n+chr1\t19271000\t19272000\tTfap2d\t472.0\t178000\t0.000423728814\t1.000000000000\t0.665772905546\t0.200000000000\n+chr1\t19272000\t19273000\tTfap2d\t472.0\t179000\t0.000423728814\t1.000000000000\t0.678576230756\t0.200000000000\n+chr1\t19273000\t19274000\tTfap2d\t472.0\t180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19274000\t19275000\tTfap2d\t472.0\t181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19275000\t19276000\tTfap2d\t472.0\t182000\t0.000423728814\t1.000000000000\t0.758837934828\t0.200000000000\n+chr1\t19276000\t19277000\tTfap2d\t472.0\t183000\t0.000423728814\t1.000000000000\t0.735124249200\t0.200000000000\n+chr1\t19277000\t19278000\tTfap2d\t472.0\t184000\t0.000423728814\t1.000000000000\t0.688506614701\t0.200000000000\n+chr1\t19278000\t19279000\tTfap2d\t472.0\t185000\t0.000423728814\t1.000000000000\t0.678576230756\t0.200000000000\n+chr1\t19279000\t19280000\tTfap2d\t472.0\t186000\t0.000423728814\t1.000000000000\t0.750765190784\t0.200000000000\n+chr1\t19280000\t19281000\tTfap2d\t472.0\t187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19281000\t19282000\tTfap2d\t472.0\t188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19282000\t19283000\tTfap2d\t472.0\t189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19283000\t19284000\tTfap2d\t472.0\t190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19284000\t19285000\tTfap2d\t472.0\t191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19285000\t19286000\tTfap2d\t472.0\t192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19286000\t19287000\tTfap2d\t472.0\t193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19287000\t19288000\tTfap2d\t472.0\t194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19288000\t19289000\tTfap2d\t472.0\t195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19289000\t19290000\tTfap2d\t472.0\t196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19290000\t19291000\tTfap2d\t472.0\t197000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19291000\t19292000\tTfap2d\t472.0\t198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19292000\t19293000\tTfap2d\t472.0\t199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19293000\t19294000\tTfap2d\t472.0\t200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed --- a/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 810.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t4287000\t4288000\tSox17\t810.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4288000\t4289000\tSox17\t810.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4289000\t4290000\tSox17\t810.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4290000\t4291000\tSox17\t810.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n-chr1\t4291000\t4292000\tSox17\t810.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4292000\t4293000\tSox17\t810.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4293000\t4294000\tSox17\t810.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4294000\t4295000\tSox17\t810.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4295000\t4296000\tSox17\t810.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4296000\t4297000\tSox17\t810.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4297000\t4298000\tSox17\t810.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4298000\t4299000\tSox17\t810.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4299000\t4300000\tSox17\t810.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4300000\t4301000\tSox17\t810.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4301000\t4302000\tSox17\t810.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4302000\t4303000\tSox17\t810.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4303000\t4304000\tSox17\t810.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4304000\t4305000\tSox17\t810.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4305000\t4306000\tSox17\t810.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4306000\t4307000\tSox17\t810.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4307000\t4308000\tSox17\t810.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4308000\t4309000\tSox17\t810.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4309000\t4310000\tSox17\t810.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4310000\t4311000\tSox17\t810.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4311000\t4312000\tSox17\t810.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4312000\t4313000\tSox17\t810.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4313000\t4314000\tSox17\t810.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4314000\t4315000\tSox17\t810.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4315000\t4316000\tSox17\t810.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4316000\t4317000\tSox17\t810.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4317000\t4318000\tSox17\t810.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4318000\t4319000\tSox17\t810.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4319000\t4320000\tSox17\t810.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4320000\t4321000\tSox17\t810.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4321000\t4322000\tSox17\t810.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4322000\t4323000\tSox17\t810.0\t-165000\t0.000000"..b'0.000493827160\t1.000000000000\t0.593839639683\t0.400000000000\n-chr1\t4649000\t4650000\tSox17\t810.0\t162000\t0.000493827160\t0.998003530647\t0.671402368765\t0.400000000000\n-chr1\t4650000\t4651000\tSox17\t810.0\t163000\t0.000493827160\t0.999352809734\t0.682545975694\t0.400000000000\n-chr1\t4651000\t4652000\tSox17\t810.0\t164000\t0.000493827160\t0.999664588125\t0.712093420742\t0.400000000000\n-chr1\t4652000\t4653000\tSox17\t810.0\t165000\t0.000987654321\t0.999918251505\t1.516069864221\t0.800000000000\n-chr1\t4653000\t4654000\tSox17\t810.0\t166000\t0.000987654321\t0.989304103068\t1.644935803753\t0.800000000000\n-chr1\t4654000\t4655000\tSox17\t810.0\t167000\t0.000987654321\t1.000000000000\t1.574101247046\t0.800000000000\n-chr1\t4655000\t4656000\tSox17\t810.0\t168000\t0.001481481481\t0.000000000583\t2.295259259717\t1.200000000000\n-chr1\t4656000\t4657000\tSox17\t810.0\t169000\t0.001728395062\t0.002791015205\t2.419023237597\t1.400000000000\n-chr1\t4657000\t4658000\tSox17\t810.0\t170000\t0.001234567901\t0.000219787737\t1.671682727052\t1.000000000000\n-chr1\t4658000\t4659000\tSox17\t810.0\t171000\t0.000987654321\t0.981475867334\t1.353856628464\t0.800000000000\n-chr1\t4659000\t4660000\tSox17\t810.0\t172000\t0.000987654321\t0.944032684304\t1.270220697103\t0.800000000000\n-chr1\t4660000\t4661000\tSox17\t810.0\t173000\t0.000493827160\t0.999936032663\t0.647612520865\t0.400000000000\n-chr1\t4661000\t4662000\tSox17\t810.0\t174000\t0.000246913580\t0.999594131731\t0.342694958640\t0.200000000000\n-chr1\t4662000\t4663000\tSox17\t810.0\t175000\t0.000246913580\t1.000000000000\t0.354512026264\t0.200000000000\n-chr1\t4663000\t4664000\tSox17\t810.0\t176000\t0.000246913580\t1.000000000000\t0.349986340790\t0.200000000000\n-chr1\t4664000\t4665000\tSox17\t810.0\t177000\t0.000246913580\t1.000000000000\t0.373849046024\t0.200000000000\n-chr1\t4665000\t4666000\tSox17\t810.0\t178000\t0.000493827160\t1.000000000000\t0.775913114612\t0.400000000000\n-chr1\t4666000\t4667000\tSox17\t810.0\t179000\t0.000246913580\t1.000000000000\t0.395417260391\t0.200000000000\n-chr1\t4667000\t4668000\tSox17\t810.0\t180000\t0.000246913580\t1.000000000000\t0.417496396239\t0.200000000000\n-chr1\t4668000\t4669000\tSox17\t810.0\t181000\t0.000246913580\t1.000000000000\t0.419626479907\t0.200000000000\n-chr1\t4669000\t4670000\tSox17\t810.0\t182000\t0.000246913580\t1.000000000000\t0.442187043505\t0.200000000000\n-chr1\t4670000\t4671000\tSox17\t810.0\t183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4671000\t4672000\tSox17\t810.0\t184000\t0.000246913580\t1.000000000000\t0.401203854492\t0.200000000000\n-chr1\t4672000\t4673000\tSox17\t810.0\t185000\t0.000246913580\t1.000000000000\t0.395417260391\t0.200000000000\n-chr1\t4673000\t4674000\tSox17\t810.0\t186000\t0.000246913580\t1.000000000000\t0.437482925987\t0.200000000000\n-chr1\t4674000\t4675000\tSox17\t810.0\t187000\t0.000246913580\t1.000000000000\t0.444577243757\t0.200000000000\n-chr1\t4675000\t4676000\tSox17\t810.0\t188000\t0.000493827160\t1.000000000000\t0.879644813784\t0.400000000000\n-chr1\t4676000\t4677000\tSox17\t810.0\t189000\t0.000246913580\t1.000000000000\t0.478179012441\t0.200000000000\n-chr1\t4677000\t4678000\tSox17\t810.0\t190000\t0.000246913580\t1.000000000000\t0.480975380957\t0.200000000000\n-chr1\t4678000\t4679000\tSox17\t810.0\t191000\t0.000740740741\t1.000000000000\t1.370779835192\t0.600000000000\n-chr1\t4679000\t4680000\tSox17\t810.0\t192000\t0.000740740741\t1.000000000000\t1.355716320410\t0.600000000000\n-chr1\t4680000\t4681000\tSox17\t810.0\t193000\t0.000740740741\t1.000000000000\t1.468692681340\t0.600000000000\n-chr1\t4681000\t4682000\tSox17\t810.0\t194000\t0.000740740741\t1.000000000000\t1.426244915656\t0.600000000000\n-chr1\t4682000\t4683000\tSox17\t810.0\t195000\t0.000740740741\t1.000000000000\t1.513744604449\t0.600000000000\n-chr1\t4683000\t4684000\tSox17\t810.0\t196000\t0.000493827160\t1.000000000000\t1.009163069632\t0.400000000000\n-chr1\t4684000\t4685000\tSox17\t810.0\t197000\t0.000493827160\t1.000000000000\t0.934622615061\t0.400000000000\n-chr1\t4685000\t4686000\tSox17\t810.0\t198000\t0.000246913580\t1.000000000000\t0.403170540070\t0.200000000000\n-chr1\t4686000\t4687000\tSox17\t810.0\t199000\t0.000308641975\t1.000000000000\t0.538264332961\t0.250000000000\n-chr1\t4687000\t4688000\tSox17\t810.0\t200000\t0.000411522634\t1.000000000000\t0.699377466512\t0.333333333333\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 810.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t4287000\t4288000\tSox17\t810.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4288000\t4289000\tSox17\t810.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4289000\t4290000\tSox17\t810.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4290000\t4291000\tSox17\t810.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t4291000\t4292000\tSox17\t810.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4292000\t4293000\tSox17\t810.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4293000\t4294000\tSox17\t810.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4294000\t4295000\tSox17\t810.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4295000\t4296000\tSox17\t810.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4296000\t4297000\tSox17\t810.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4297000\t4298000\tSox17\t810.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4298000\t4299000\tSox17\t810.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4299000\t4300000\tSox17\t810.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4300000\t4301000\tSox17\t810.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4301000\t4302000\tSox17\t810.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4302000\t4303000\tSox17\t810.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4303000\t4304000\tSox17\t810.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4304000\t4305000\tSox17\t810.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4305000\t4306000\tSox17\t810.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4306000\t4307000\tSox17\t810.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4307000\t4308000\tSox17\t810.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4308000\t4309000\tSox17\t810.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4309000\t4310000\tSox17\t810.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4310000\t4311000\tSox17\t810.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4311000\t4312000\tSox17\t810.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4312000\t4313000\tSox17\t810.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4313000\t4314000\tSox17\t810.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4314000\t4315000\tSox17\t810.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4315000\t4316000\tSox17\t810.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4316000\t4317000\tSox17\t810.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4317000\t4318000\tSox17\t810.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4318000\t4319000\tSox17\t810.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4319000\t4320000\tSox17\t810.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4320000\t4321000\tSox17\t810.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4321000\t4322000\tSox17\t810.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4322000\t4323000\tSox17\t810.0\t-165000\t0.000000"..b'0.000493827160\t1.000000000000\t0.593839639683\t0.400000000000\n+chr1\t4649000\t4650000\tSox17\t810.0\t162000\t0.000493827160\t0.998003530647\t0.671402368765\t0.400000000000\n+chr1\t4650000\t4651000\tSox17\t810.0\t163000\t0.000493827160\t0.999352809734\t0.682545975694\t0.400000000000\n+chr1\t4651000\t4652000\tSox17\t810.0\t164000\t0.000493827160\t0.999664588125\t0.712093420742\t0.400000000000\n+chr1\t4652000\t4653000\tSox17\t810.0\t165000\t0.000987654321\t0.999918251505\t1.516069864221\t0.800000000000\n+chr1\t4653000\t4654000\tSox17\t810.0\t166000\t0.000987654321\t0.989304103068\t1.644935803753\t0.800000000000\n+chr1\t4654000\t4655000\tSox17\t810.0\t167000\t0.000987654321\t1.000000000000\t1.574101247046\t0.800000000000\n+chr1\t4655000\t4656000\tSox17\t810.0\t168000\t0.001481481481\t0.000000000583\t2.295259259717\t1.200000000000\n+chr1\t4656000\t4657000\tSox17\t810.0\t169000\t0.001728395062\t0.002791015205\t2.419023237597\t1.400000000000\n+chr1\t4657000\t4658000\tSox17\t810.0\t170000\t0.001234567901\t0.000219787737\t1.671682727052\t1.000000000000\n+chr1\t4658000\t4659000\tSox17\t810.0\t171000\t0.000987654321\t0.981475867334\t1.353856628464\t0.800000000000\n+chr1\t4659000\t4660000\tSox17\t810.0\t172000\t0.000987654321\t0.944032684304\t1.270220697103\t0.800000000000\n+chr1\t4660000\t4661000\tSox17\t810.0\t173000\t0.000493827160\t0.999936032663\t0.647612520865\t0.400000000000\n+chr1\t4661000\t4662000\tSox17\t810.0\t174000\t0.000246913580\t0.999594131731\t0.342694958640\t0.200000000000\n+chr1\t4662000\t4663000\tSox17\t810.0\t175000\t0.000246913580\t1.000000000000\t0.354512026264\t0.200000000000\n+chr1\t4663000\t4664000\tSox17\t810.0\t176000\t0.000246913580\t1.000000000000\t0.349986340790\t0.200000000000\n+chr1\t4664000\t4665000\tSox17\t810.0\t177000\t0.000246913580\t1.000000000000\t0.373849046024\t0.200000000000\n+chr1\t4665000\t4666000\tSox17\t810.0\t178000\t0.000493827160\t1.000000000000\t0.775913114612\t0.400000000000\n+chr1\t4666000\t4667000\tSox17\t810.0\t179000\t0.000246913580\t1.000000000000\t0.395417260391\t0.200000000000\n+chr1\t4667000\t4668000\tSox17\t810.0\t180000\t0.000246913580\t1.000000000000\t0.417496396239\t0.200000000000\n+chr1\t4668000\t4669000\tSox17\t810.0\t181000\t0.000246913580\t1.000000000000\t0.419626479907\t0.200000000000\n+chr1\t4669000\t4670000\tSox17\t810.0\t182000\t0.000246913580\t1.000000000000\t0.442187043505\t0.200000000000\n+chr1\t4670000\t4671000\tSox17\t810.0\t183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4671000\t4672000\tSox17\t810.0\t184000\t0.000246913580\t1.000000000000\t0.401203854492\t0.200000000000\n+chr1\t4672000\t4673000\tSox17\t810.0\t185000\t0.000246913580\t1.000000000000\t0.395417260391\t0.200000000000\n+chr1\t4673000\t4674000\tSox17\t810.0\t186000\t0.000246913580\t1.000000000000\t0.437482925987\t0.200000000000\n+chr1\t4674000\t4675000\tSox17\t810.0\t187000\t0.000246913580\t1.000000000000\t0.444577243757\t0.200000000000\n+chr1\t4675000\t4676000\tSox17\t810.0\t188000\t0.000493827160\t1.000000000000\t0.879644813784\t0.400000000000\n+chr1\t4676000\t4677000\tSox17\t810.0\t189000\t0.000246913580\t1.000000000000\t0.478179012441\t0.200000000000\n+chr1\t4677000\t4678000\tSox17\t810.0\t190000\t0.000246913580\t1.000000000000\t0.480975380957\t0.200000000000\n+chr1\t4678000\t4679000\tSox17\t810.0\t191000\t0.000740740741\t1.000000000000\t1.370779835192\t0.600000000000\n+chr1\t4679000\t4680000\tSox17\t810.0\t192000\t0.000740740741\t1.000000000000\t1.355716320410\t0.600000000000\n+chr1\t4680000\t4681000\tSox17\t810.0\t193000\t0.000740740741\t1.000000000000\t1.468692681340\t0.600000000000\n+chr1\t4681000\t4682000\tSox17\t810.0\t194000\t0.000740740741\t1.000000000000\t1.426244915656\t0.600000000000\n+chr1\t4682000\t4683000\tSox17\t810.0\t195000\t0.000740740741\t1.000000000000\t1.513744604449\t0.600000000000\n+chr1\t4683000\t4684000\tSox17\t810.0\t196000\t0.000493827160\t1.000000000000\t1.009163069632\t0.400000000000\n+chr1\t4684000\t4685000\tSox17\t810.0\t197000\t0.000493827160\t1.000000000000\t0.934622615061\t0.400000000000\n+chr1\t4685000\t4686000\tSox17\t810.0\t198000\t0.000246913580\t1.000000000000\t0.403170540070\t0.200000000000\n+chr1\t4686000\t4687000\tSox17\t810.0\t199000\t0.000308641975\t1.000000000000\t0.538264332961\t0.250000000000\n+chr1\t4687000\t4688000\tSox17\t810.0\t200000\t0.000411522634\t1.000000000000\t0.699377466512\t0.333333333333\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed --- a/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 832.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t14100000\t14101000\tEya1\t832.0\t-200000\t0.000400641026\t1.000000000000\t2.426424093120\t0.333333333333\n-chr1\t14101000\t14102000\tEya1\t832.0\t-199000\t0.000300480769\t1.000000000000\t1.429857059822\t0.250000000000\n-chr1\t14102000\t14103000\tEya1\t832.0\t-198000\t0.000240384615\t1.000000000000\t0.931069711724\t0.200000000000\n-chr1\t14103000\t14104000\tEya1\t832.0\t-197000\t0.000240384615\t0.999999994943\t0.889688835341\t0.200000000000\n-chr1\t14104000\t14105000\tEya1\t832.0\t-196000\t0.000240384615\t1.000000000000\t0.976487746811\t0.200000000000\n-chr1\t14105000\t14106000\tEya1\t832.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14106000\t14107000\tEya1\t832.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14107000\t14108000\tEya1\t832.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14108000\t14109000\tEya1\t832.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14109000\t14110000\tEya1\t832.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14110000\t14111000\tEya1\t832.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14111000\t14112000\tEya1\t832.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14112000\t14113000\tEya1\t832.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14113000\t14114000\tEya1\t832.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14114000\t14115000\tEya1\t832.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14115000\t14116000\tEya1\t832.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14116000\t14117000\tEya1\t832.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14117000\t14118000\tEya1\t832.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14118000\t14119000\tEya1\t832.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14119000\t14120000\tEya1\t832.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14120000\t14121000\tEya1\t832.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14121000\t14122000\tEya1\t832.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14122000\t14123000\tEya1\t832.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14123000\t14124000\tEya1\t832.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14124000\t14125000\tEya1\t832.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14125000\t14126000\tEya1\t832.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14126000\t14127000\tEya1\t832.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14127000\t14128000\tEya1\t832.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14128000\t14129000\tEya1\t832.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14129000\t14130000\tEya1\t832.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14130000\t14131000\tEya1\t832.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14131000\t14132000\tEya1\t832.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14132000\t14133000\tEya1\t832.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14133000\t14134000\tEya1\t832.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14134000\t14135000\tEya1\t832.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t141350"..b'96844\t1.600000000000\n-chr1\t14462000\t14463000\tEya1\t832.0\t162000\t0.002163461538\t0.001996469353\t2.941420233350\t1.800000000000\n-chr1\t14463000\t14464000\tEya1\t832.0\t163000\t0.001682692308\t0.000647190266\t2.325742597467\t1.400000000000\n-chr1\t14464000\t14465000\tEya1\t832.0\t164000\t0.001682692308\t0.000335411875\t2.426424095919\t1.400000000000\n-chr1\t14465000\t14466000\tEya1\t832.0\t165000\t0.000721153846\t0.999918251505\t1.106986108791\t0.600000000000\n-chr1\t14466000\t14467000\tEya1\t832.0\t166000\t0.000240384615\t0.989304103068\t0.400359976274\t0.200000000000\n-chr1\t14467000\t14468000\tEya1\t832.0\t167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14468000\t14469000\tEya1\t832.0\t168000\t0.000000000000\t0.999999999417\t0.000000000000\t0.000000000000\n-chr1\t14469000\t14470000\tEya1\t832.0\t169000\t0.000000000000\t0.997208984795\t0.000000000000\t0.000000000000\n-chr1\t14470000\t14471000\tEya1\t832.0\t170000\t0.000000000000\t0.999780212263\t0.000000000000\t0.000000000000\n-chr1\t14471000\t14472000\tEya1\t832.0\t171000\t0.000480769231\t0.981475867334\t0.659028767461\t0.400000000000\n-chr1\t14472000\t14473000\tEya1\t832.0\t172000\t0.000480769231\t0.944032684304\t0.618316565296\t0.400000000000\n-chr1\t14473000\t14474000\tEya1\t832.0\t173000\t0.000480769231\t0.999936032663\t0.630488151323\t0.400000000000\n-chr1\t14474000\t14475000\tEya1\t832.0\t174000\t0.000480769231\t0.999594131731\t0.667266626197\t0.400000000000\n-chr1\t14475000\t14476000\tEya1\t832.0\t175000\t0.000480769231\t1.000000000000\t0.690275820369\t0.400000000000\n-chr1\t14476000\t14477000\tEya1\t832.0\t176000\t0.000240384615\t1.000000000000\t0.340731894279\t0.200000000000\n-chr1\t14477000\t14478000\tEya1\t832.0\t177000\t0.000480769231\t1.000000000000\t0.727927229038\t0.400000000000\n-chr1\t14478000\t14479000\tEya1\t832.0\t178000\t0.000480769231\t1.000000000000\t0.755396181293\t0.400000000000\n-chr1\t14479000\t14480000\tEya1\t832.0\t179000\t0.000480769231\t1.000000000000\t0.769923031050\t0.400000000000\n-chr1\t14480000\t14481000\tEya1\t832.0\t180000\t0.000480769231\t1.000000000000\t0.812913656138\t0.400000000000\n-chr1\t14481000\t14482000\tEya1\t832.0\t181000\t0.000240384615\t1.000000000000\t0.408530587410\t0.200000000000\n-chr1\t14482000\t14483000\tEya1\t832.0\t182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14483000\t14484000\tEya1\t832.0\t183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14484000\t14485000\tEya1\t832.0\t184000\t0.000240384615\t1.000000000000\t0.390595098725\t0.200000000000\n-chr1\t14485000\t14486000\tEya1\t832.0\t185000\t0.000961538462\t1.000000000000\t1.539846062099\t0.800000000000\n-chr1\t14486000\t14487000\tEya1\t832.0\t186000\t0.000961538462\t1.000000000000\t1.703659471393\t0.800000000000\n-chr1\t14487000\t14488000\tEya1\t832.0\t187000\t0.000961538462\t1.000000000000\t1.731286381939\t0.800000000000\n-chr1\t14488000\t14489000\tEya1\t832.0\t188000\t0.001201923077\t0.000000000000\t2.140962437394\t1.000000000000\n-chr1\t14489000\t14490000\tEya1\t832.0\t189000\t0.001442307692\t0.000000000000\t2.793209135173\t1.200000000000\n-chr1\t14490000\t14491000\tEya1\t832.0\t190000\t0.000721153846\t1.000000000000\t1.404771845823\t0.600000000000\n-chr1\t14491000\t14492000\tEya1\t832.0\t191000\t0.001442307692\t0.000000000000\t2.669066506024\t1.200000000000\n-chr1\t14492000\t14493000\tEya1\t832.0\t192000\t0.002403846154\t0.000000000000\t4.399560174407\t2.000000000000\n-chr1\t14493000\t14494000\tEya1\t832.0\t193000\t0.002163461538\t0.000000000000\t4.289571172663\t1.800000000000\n-chr1\t14494000\t14495000\tEya1\t832.0\t194000\t0.001682692308\t0.000000000000\t3.239907320421\t1.400000000000\n-chr1\t14495000\t14496000\tEya1\t832.0\t195000\t0.002163461538\t0.000000000000\t4.421153111551\t1.800000000000\n-chr1\t14496000\t14497000\tEya1\t832.0\t196000\t0.001682692308\t0.000000000000\t3.438674642317\t1.400000000000\n-chr1\t14497000\t14498000\tEya1\t832.0\t197000\t0.001442307692\t0.000000000000\t2.729727108893\t1.200000000000\n-chr1\t14498000\t14499000\tEya1\t832.0\t198000\t0.002644230769\t0.000000000000\t4.317607586564\t2.200000000000\n-chr1\t14499000\t14500000\tEya1\t832.0\t199000\t0.003305288462\t0.000000000000\t5.764345200343\t2.750000000000\n-chr1\t14500000\t14501000\tEya1\t832.0\t200000\t0.003605769231\t0.000000000000\t6.127958811148\t3.000000000000\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 832.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t14100000\t14101000\tEya1\t832.0\t-200000\t0.000400641026\t1.000000000000\t2.426424093120\t0.333333333333\n+chr1\t14101000\t14102000\tEya1\t832.0\t-199000\t0.000300480769\t1.000000000000\t1.429857059822\t0.250000000000\n+chr1\t14102000\t14103000\tEya1\t832.0\t-198000\t0.000240384615\t1.000000000000\t0.931069711724\t0.200000000000\n+chr1\t14103000\t14104000\tEya1\t832.0\t-197000\t0.000240384615\t0.999999994943\t0.889688835341\t0.200000000000\n+chr1\t14104000\t14105000\tEya1\t832.0\t-196000\t0.000240384615\t1.000000000000\t0.976487746811\t0.200000000000\n+chr1\t14105000\t14106000\tEya1\t832.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14106000\t14107000\tEya1\t832.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14107000\t14108000\tEya1\t832.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14108000\t14109000\tEya1\t832.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14109000\t14110000\tEya1\t832.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14110000\t14111000\tEya1\t832.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14111000\t14112000\tEya1\t832.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14112000\t14113000\tEya1\t832.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14113000\t14114000\tEya1\t832.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14114000\t14115000\tEya1\t832.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14115000\t14116000\tEya1\t832.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14116000\t14117000\tEya1\t832.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14117000\t14118000\tEya1\t832.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14118000\t14119000\tEya1\t832.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14119000\t14120000\tEya1\t832.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14120000\t14121000\tEya1\t832.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14121000\t14122000\tEya1\t832.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14122000\t14123000\tEya1\t832.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14123000\t14124000\tEya1\t832.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14124000\t14125000\tEya1\t832.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14125000\t14126000\tEya1\t832.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14126000\t14127000\tEya1\t832.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14127000\t14128000\tEya1\t832.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14128000\t14129000\tEya1\t832.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14129000\t14130000\tEya1\t832.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14130000\t14131000\tEya1\t832.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14131000\t14132000\tEya1\t832.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14132000\t14133000\tEya1\t832.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14133000\t14134000\tEya1\t832.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14134000\t14135000\tEya1\t832.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t141350"..b'96844\t1.600000000000\n+chr1\t14462000\t14463000\tEya1\t832.0\t162000\t0.002163461538\t0.001996469353\t2.941420233350\t1.800000000000\n+chr1\t14463000\t14464000\tEya1\t832.0\t163000\t0.001682692308\t0.000647190266\t2.325742597467\t1.400000000000\n+chr1\t14464000\t14465000\tEya1\t832.0\t164000\t0.001682692308\t0.000335411875\t2.426424095919\t1.400000000000\n+chr1\t14465000\t14466000\tEya1\t832.0\t165000\t0.000721153846\t0.999918251505\t1.106986108791\t0.600000000000\n+chr1\t14466000\t14467000\tEya1\t832.0\t166000\t0.000240384615\t0.989304103068\t0.400359976274\t0.200000000000\n+chr1\t14467000\t14468000\tEya1\t832.0\t167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14468000\t14469000\tEya1\t832.0\t168000\t0.000000000000\t0.999999999417\t0.000000000000\t0.000000000000\n+chr1\t14469000\t14470000\tEya1\t832.0\t169000\t0.000000000000\t0.997208984795\t0.000000000000\t0.000000000000\n+chr1\t14470000\t14471000\tEya1\t832.0\t170000\t0.000000000000\t0.999780212263\t0.000000000000\t0.000000000000\n+chr1\t14471000\t14472000\tEya1\t832.0\t171000\t0.000480769231\t0.981475867334\t0.659028767461\t0.400000000000\n+chr1\t14472000\t14473000\tEya1\t832.0\t172000\t0.000480769231\t0.944032684304\t0.618316565296\t0.400000000000\n+chr1\t14473000\t14474000\tEya1\t832.0\t173000\t0.000480769231\t0.999936032663\t0.630488151323\t0.400000000000\n+chr1\t14474000\t14475000\tEya1\t832.0\t174000\t0.000480769231\t0.999594131731\t0.667266626197\t0.400000000000\n+chr1\t14475000\t14476000\tEya1\t832.0\t175000\t0.000480769231\t1.000000000000\t0.690275820369\t0.400000000000\n+chr1\t14476000\t14477000\tEya1\t832.0\t176000\t0.000240384615\t1.000000000000\t0.340731894279\t0.200000000000\n+chr1\t14477000\t14478000\tEya1\t832.0\t177000\t0.000480769231\t1.000000000000\t0.727927229038\t0.400000000000\n+chr1\t14478000\t14479000\tEya1\t832.0\t178000\t0.000480769231\t1.000000000000\t0.755396181293\t0.400000000000\n+chr1\t14479000\t14480000\tEya1\t832.0\t179000\t0.000480769231\t1.000000000000\t0.769923031050\t0.400000000000\n+chr1\t14480000\t14481000\tEya1\t832.0\t180000\t0.000480769231\t1.000000000000\t0.812913656138\t0.400000000000\n+chr1\t14481000\t14482000\tEya1\t832.0\t181000\t0.000240384615\t1.000000000000\t0.408530587410\t0.200000000000\n+chr1\t14482000\t14483000\tEya1\t832.0\t182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14483000\t14484000\tEya1\t832.0\t183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14484000\t14485000\tEya1\t832.0\t184000\t0.000240384615\t1.000000000000\t0.390595098725\t0.200000000000\n+chr1\t14485000\t14486000\tEya1\t832.0\t185000\t0.000961538462\t1.000000000000\t1.539846062099\t0.800000000000\n+chr1\t14486000\t14487000\tEya1\t832.0\t186000\t0.000961538462\t1.000000000000\t1.703659471393\t0.800000000000\n+chr1\t14487000\t14488000\tEya1\t832.0\t187000\t0.000961538462\t1.000000000000\t1.731286381939\t0.800000000000\n+chr1\t14488000\t14489000\tEya1\t832.0\t188000\t0.001201923077\t0.000000000000\t2.140962437394\t1.000000000000\n+chr1\t14489000\t14490000\tEya1\t832.0\t189000\t0.001442307692\t0.000000000000\t2.793209135173\t1.200000000000\n+chr1\t14490000\t14491000\tEya1\t832.0\t190000\t0.000721153846\t1.000000000000\t1.404771845823\t0.600000000000\n+chr1\t14491000\t14492000\tEya1\t832.0\t191000\t0.001442307692\t0.000000000000\t2.669066506024\t1.200000000000\n+chr1\t14492000\t14493000\tEya1\t832.0\t192000\t0.002403846154\t0.000000000000\t4.399560174407\t2.000000000000\n+chr1\t14493000\t14494000\tEya1\t832.0\t193000\t0.002163461538\t0.000000000000\t4.289571172663\t1.800000000000\n+chr1\t14494000\t14495000\tEya1\t832.0\t194000\t0.001682692308\t0.000000000000\t3.239907320421\t1.400000000000\n+chr1\t14495000\t14496000\tEya1\t832.0\t195000\t0.002163461538\t0.000000000000\t4.421153111551\t1.800000000000\n+chr1\t14496000\t14497000\tEya1\t832.0\t196000\t0.001682692308\t0.000000000000\t3.438674642317\t1.400000000000\n+chr1\t14497000\t14498000\tEya1\t832.0\t197000\t0.001442307692\t0.000000000000\t2.729727108893\t1.200000000000\n+chr1\t14498000\t14499000\tEya1\t832.0\t198000\t0.002644230769\t0.000000000000\t4.317607586564\t2.200000000000\n+chr1\t14499000\t14500000\tEya1\t832.0\t199000\t0.003305288462\t0.000000000000\t5.764345200343\t2.750000000000\n+chr1\t14500000\t14501000\tEya1\t832.0\t200000\t0.003605769231\t0.000000000000\t6.127958811148\t3.000000000000\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed --- a/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 800.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t18893000\t18894000\tTfap2d\t800.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18894000\t18895000\tTfap2d\t800.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18895000\t18896000\tTfap2d\t800.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18896000\t18897000\tTfap2d\t800.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n-chr1\t18897000\t18898000\tTfap2d\t800.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18898000\t18899000\tTfap2d\t800.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18899000\t18900000\tTfap2d\t800.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18900000\t18901000\tTfap2d\t800.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18901000\t18902000\tTfap2d\t800.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18902000\t18903000\tTfap2d\t800.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18903000\t18904000\tTfap2d\t800.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18904000\t18905000\tTfap2d\t800.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18905000\t18906000\tTfap2d\t800.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18906000\t18907000\tTfap2d\t800.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18907000\t18908000\tTfap2d\t800.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18908000\t18909000\tTfap2d\t800.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18909000\t18910000\tTfap2d\t800.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18910000\t18911000\tTfap2d\t800.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18911000\t18912000\tTfap2d\t800.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18912000\t18913000\tTfap2d\t800.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18913000\t18914000\tTfap2d\t800.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18914000\t18915000\tTfap2d\t800.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18915000\t18916000\tTfap2d\t800.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18916000\t18917000\tTfap2d\t800.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18917000\t18918000\tTfap2d\t800.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18918000\t18919000\tTfap2d\t800.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18919000\t18920000\tTfap2d\t800.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18920000\t18921000\tTfap2d\t800.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18921000\t18922000\tTfap2d\t800.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18922000\t18923000\tTfap2d\t800.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18923000\t18924000\tTfap2d\t800.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18924000\t18925000\tTfap2d\t800.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18925000\t18926000\tTfap2d\t800.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18926000\t18927000\tTfap2d\t800.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18927000\t18928000\tTfap2d\t800.0\t-166000\t"..b'0\t0.998003530647\t0.000000000000\t0.000000000000\n-chr1\t19256000\t19257000\tTfap2d\t800.0\t163000\t0.000000000000\t0.999352809734\t0.000000000000\t0.000000000000\n-chr1\t19257000\t19258000\tTfap2d\t800.0\t164000\t0.000000000000\t0.999664588125\t0.000000000000\t0.000000000000\n-chr1\t19258000\t19259000\tTfap2d\t800.0\t165000\t0.000250000000\t0.999918251505\t0.383755184381\t0.200000000000\n-chr1\t19259000\t19260000\tTfap2d\t800.0\t166000\t0.000500000000\t0.989304103068\t0.832748750650\t0.400000000000\n-chr1\t19260000\t19261000\tTfap2d\t800.0\t167000\t0.000750000000\t1.000000000000\t1.195333134476\t0.600000000000\n-chr1\t19261000\t19262000\tTfap2d\t800.0\t168000\t0.000750000000\t0.999999999417\t1.161975000232\t0.600000000000\n-chr1\t19262000\t19263000\tTfap2d\t800.0\t169000\t0.001000000000\t0.997208984795\t1.399577730324\t0.800000000000\n-chr1\t19263000\t19264000\tTfap2d\t800.0\t170000\t0.000750000000\t0.999780212263\t1.015547256684\t0.600000000000\n-chr1\t19264000\t19265000\tTfap2d\t800.0\t171000\t0.000750000000\t0.981475867334\t1.028084877240\t0.600000000000\n-chr1\t19265000\t19266000\tTfap2d\t800.0\t172000\t0.000500000000\t0.944032684304\t0.643049227908\t0.400000000000\n-chr1\t19266000\t19267000\tTfap2d\t800.0\t173000\t0.000750000000\t0.999936032663\t0.983561516064\t0.600000000000\n-chr1\t19267000\t19268000\tTfap2d\t800.0\t174000\t0.000500000000\t0.999594131731\t0.693957291245\t0.400000000000\n-chr1\t19268000\t19269000\tTfap2d\t800.0\t175000\t0.000750000000\t1.000000000000\t1.076830279776\t0.600000000000\n-chr1\t19269000\t19270000\tTfap2d\t800.0\t176000\t0.000750000000\t1.000000000000\t1.063083510150\t0.600000000000\n-chr1\t19270000\t19271000\tTfap2d\t800.0\t177000\t0.000750000000\t1.000000000000\t1.135566477299\t0.600000000000\n-chr1\t19271000\t19272000\tTfap2d\t800.0\t178000\t0.000500000000\t1.000000000000\t0.785612028545\t0.400000000000\n-chr1\t19272000\t19273000\tTfap2d\t800.0\t179000\t0.000500000000\t1.000000000000\t0.800719952292\t0.400000000000\n-chr1\t19273000\t19274000\tTfap2d\t800.0\t180000\t0.000250000000\t1.000000000000\t0.422715101192\t0.200000000000\n-chr1\t19274000\t19275000\tTfap2d\t800.0\t181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19275000\t19276000\tTfap2d\t800.0\t182000\t0.000250000000\t1.000000000000\t0.447714381549\t0.200000000000\n-chr1\t19276000\t19277000\tTfap2d\t800.0\t183000\t0.000250000000\t1.000000000000\t0.433723307028\t0.200000000000\n-chr1\t19277000\t19278000\tTfap2d\t800.0\t184000\t0.000750000000\t1.000000000000\t1.218656708021\t0.600000000000\n-chr1\t19278000\t19279000\tTfap2d\t800.0\t185000\t0.000750000000\t1.000000000000\t1.201079928437\t0.600000000000\n-chr1\t19279000\t19280000\tTfap2d\t800.0\t186000\t0.000750000000\t1.000000000000\t1.328854387687\t0.600000000000\n-chr1\t19280000\t19281000\tTfap2d\t800.0\t187000\t0.000500000000\t1.000000000000\t0.900268918608\t0.400000000000\n-chr1\t19281000\t19282000\tTfap2d\t800.0\t188000\t0.000500000000\t1.000000000000\t0.890640373956\t0.400000000000\n-chr1\t19282000\t19283000\tTfap2d\t800.0\t189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19283000\t19284000\tTfap2d\t800.0\t190000\t0.000250000000\t1.000000000000\t0.486987573219\t0.200000000000\n-chr1\t19284000\t19285000\tTfap2d\t800.0\t191000\t0.000250000000\t1.000000000000\t0.462638194377\t0.200000000000\n-chr1\t19285000\t19286000\tTfap2d\t800.0\t192000\t0.000250000000\t1.000000000000\t0.457554258138\t0.200000000000\n-chr1\t19286000\t19287000\tTfap2d\t800.0\t193000\t0.000500000000\t1.000000000000\t0.991367559904\t0.400000000000\n-chr1\t19287000\t19288000\tTfap2d\t800.0\t194000\t0.000500000000\t1.000000000000\t0.962715318068\t0.400000000000\n-chr1\t19288000\t19289000\tTfap2d\t800.0\t195000\t0.000250000000\t1.000000000000\t0.510888804001\t0.200000000000\n-chr1\t19289000\t19290000\tTfap2d\t800.0\t196000\t0.000250000000\t1.000000000000\t0.510888804001\t0.200000000000\n-chr1\t19290000\t19291000\tTfap2d\t800.0\t197000\t0.000250000000\t1.000000000000\t0.473152698875\t0.200000000000\n-chr1\t19291000\t19292000\tTfap2d\t800.0\t198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19292000\t19293000\tTfap2d\t800.0\t199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19293000\t19294000\tTfap2d\t800.0\t200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 800.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t18893000\t18894000\tTfap2d\t800.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18894000\t18895000\tTfap2d\t800.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18895000\t18896000\tTfap2d\t800.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18896000\t18897000\tTfap2d\t800.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t18897000\t18898000\tTfap2d\t800.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18898000\t18899000\tTfap2d\t800.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18899000\t18900000\tTfap2d\t800.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18900000\t18901000\tTfap2d\t800.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18901000\t18902000\tTfap2d\t800.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18902000\t18903000\tTfap2d\t800.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18903000\t18904000\tTfap2d\t800.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18904000\t18905000\tTfap2d\t800.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18905000\t18906000\tTfap2d\t800.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18906000\t18907000\tTfap2d\t800.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18907000\t18908000\tTfap2d\t800.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18908000\t18909000\tTfap2d\t800.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18909000\t18910000\tTfap2d\t800.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18910000\t18911000\tTfap2d\t800.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18911000\t18912000\tTfap2d\t800.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18912000\t18913000\tTfap2d\t800.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18913000\t18914000\tTfap2d\t800.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18914000\t18915000\tTfap2d\t800.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18915000\t18916000\tTfap2d\t800.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18916000\t18917000\tTfap2d\t800.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18917000\t18918000\tTfap2d\t800.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18918000\t18919000\tTfap2d\t800.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18919000\t18920000\tTfap2d\t800.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18920000\t18921000\tTfap2d\t800.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18921000\t18922000\tTfap2d\t800.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18922000\t18923000\tTfap2d\t800.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18923000\t18924000\tTfap2d\t800.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18924000\t18925000\tTfap2d\t800.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18925000\t18926000\tTfap2d\t800.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18926000\t18927000\tTfap2d\t800.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18927000\t18928000\tTfap2d\t800.0\t-166000\t"..b'0\t0.998003530647\t0.000000000000\t0.000000000000\n+chr1\t19256000\t19257000\tTfap2d\t800.0\t163000\t0.000000000000\t0.999352809734\t0.000000000000\t0.000000000000\n+chr1\t19257000\t19258000\tTfap2d\t800.0\t164000\t0.000000000000\t0.999664588125\t0.000000000000\t0.000000000000\n+chr1\t19258000\t19259000\tTfap2d\t800.0\t165000\t0.000250000000\t0.999918251505\t0.383755184381\t0.200000000000\n+chr1\t19259000\t19260000\tTfap2d\t800.0\t166000\t0.000500000000\t0.989304103068\t0.832748750650\t0.400000000000\n+chr1\t19260000\t19261000\tTfap2d\t800.0\t167000\t0.000750000000\t1.000000000000\t1.195333134476\t0.600000000000\n+chr1\t19261000\t19262000\tTfap2d\t800.0\t168000\t0.000750000000\t0.999999999417\t1.161975000232\t0.600000000000\n+chr1\t19262000\t19263000\tTfap2d\t800.0\t169000\t0.001000000000\t0.997208984795\t1.399577730324\t0.800000000000\n+chr1\t19263000\t19264000\tTfap2d\t800.0\t170000\t0.000750000000\t0.999780212263\t1.015547256684\t0.600000000000\n+chr1\t19264000\t19265000\tTfap2d\t800.0\t171000\t0.000750000000\t0.981475867334\t1.028084877240\t0.600000000000\n+chr1\t19265000\t19266000\tTfap2d\t800.0\t172000\t0.000500000000\t0.944032684304\t0.643049227908\t0.400000000000\n+chr1\t19266000\t19267000\tTfap2d\t800.0\t173000\t0.000750000000\t0.999936032663\t0.983561516064\t0.600000000000\n+chr1\t19267000\t19268000\tTfap2d\t800.0\t174000\t0.000500000000\t0.999594131731\t0.693957291245\t0.400000000000\n+chr1\t19268000\t19269000\tTfap2d\t800.0\t175000\t0.000750000000\t1.000000000000\t1.076830279776\t0.600000000000\n+chr1\t19269000\t19270000\tTfap2d\t800.0\t176000\t0.000750000000\t1.000000000000\t1.063083510150\t0.600000000000\n+chr1\t19270000\t19271000\tTfap2d\t800.0\t177000\t0.000750000000\t1.000000000000\t1.135566477299\t0.600000000000\n+chr1\t19271000\t19272000\tTfap2d\t800.0\t178000\t0.000500000000\t1.000000000000\t0.785612028545\t0.400000000000\n+chr1\t19272000\t19273000\tTfap2d\t800.0\t179000\t0.000500000000\t1.000000000000\t0.800719952292\t0.400000000000\n+chr1\t19273000\t19274000\tTfap2d\t800.0\t180000\t0.000250000000\t1.000000000000\t0.422715101192\t0.200000000000\n+chr1\t19274000\t19275000\tTfap2d\t800.0\t181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19275000\t19276000\tTfap2d\t800.0\t182000\t0.000250000000\t1.000000000000\t0.447714381549\t0.200000000000\n+chr1\t19276000\t19277000\tTfap2d\t800.0\t183000\t0.000250000000\t1.000000000000\t0.433723307028\t0.200000000000\n+chr1\t19277000\t19278000\tTfap2d\t800.0\t184000\t0.000750000000\t1.000000000000\t1.218656708021\t0.600000000000\n+chr1\t19278000\t19279000\tTfap2d\t800.0\t185000\t0.000750000000\t1.000000000000\t1.201079928437\t0.600000000000\n+chr1\t19279000\t19280000\tTfap2d\t800.0\t186000\t0.000750000000\t1.000000000000\t1.328854387687\t0.600000000000\n+chr1\t19280000\t19281000\tTfap2d\t800.0\t187000\t0.000500000000\t1.000000000000\t0.900268918608\t0.400000000000\n+chr1\t19281000\t19282000\tTfap2d\t800.0\t188000\t0.000500000000\t1.000000000000\t0.890640373956\t0.400000000000\n+chr1\t19282000\t19283000\tTfap2d\t800.0\t189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19283000\t19284000\tTfap2d\t800.0\t190000\t0.000250000000\t1.000000000000\t0.486987573219\t0.200000000000\n+chr1\t19284000\t19285000\tTfap2d\t800.0\t191000\t0.000250000000\t1.000000000000\t0.462638194377\t0.200000000000\n+chr1\t19285000\t19286000\tTfap2d\t800.0\t192000\t0.000250000000\t1.000000000000\t0.457554258138\t0.200000000000\n+chr1\t19286000\t19287000\tTfap2d\t800.0\t193000\t0.000500000000\t1.000000000000\t0.991367559904\t0.400000000000\n+chr1\t19287000\t19288000\tTfap2d\t800.0\t194000\t0.000500000000\t1.000000000000\t0.962715318068\t0.400000000000\n+chr1\t19288000\t19289000\tTfap2d\t800.0\t195000\t0.000250000000\t1.000000000000\t0.510888804001\t0.200000000000\n+chr1\t19289000\t19290000\tTfap2d\t800.0\t196000\t0.000250000000\t1.000000000000\t0.510888804001\t0.200000000000\n+chr1\t19290000\t19291000\tTfap2d\t800.0\t197000\t0.000250000000\t1.000000000000\t0.473152698875\t0.200000000000\n+chr1\t19291000\t19292000\tTfap2d\t800.0\t198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19292000\t19293000\tTfap2d\t800.0\t199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19293000\t19294000\tTfap2d\t800.0\t200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed --- a/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n-# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 978.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t4287000\t4288000\tSox17\t978.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4288000\t4289000\tSox17\t978.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4289000\t4290000\tSox17\t978.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4290000\t4291000\tSox17\t978.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n-chr1\t4291000\t4292000\tSox17\t978.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4292000\t4293000\tSox17\t978.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4293000\t4294000\tSox17\t978.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4294000\t4295000\tSox17\t978.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4295000\t4296000\tSox17\t978.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4296000\t4297000\tSox17\t978.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4297000\t4298000\tSox17\t978.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4298000\t4299000\tSox17\t978.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4299000\t4300000\tSox17\t978.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4300000\t4301000\tSox17\t978.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4301000\t4302000\tSox17\t978.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4302000\t4303000\tSox17\t978.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4303000\t4304000\tSox17\t978.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4304000\t4305000\tSox17\t978.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4305000\t4306000\tSox17\t978.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4306000\t4307000\tSox17\t978.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4307000\t4308000\tSox17\t978.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4308000\t4309000\tSox17\t978.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4309000\t4310000\tSox17\t978.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4310000\t4311000\tSox17\t978.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4311000\t4312000\tSox17\t978.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4312000\t4313000\tSox17\t978.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4313000\t4314000\tSox17\t978.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4314000\t4315000\tSox17\t978.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4315000\t4316000\tSox17\t978.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4316000\t4317000\tSox17\t978.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4317000\t4318000\tSox17\t978.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4318000\t4319000\tSox17\t978.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4319000\t4320000\tSox17\t978.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4320000\t4321000\tSox17\t978.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4321000\t4322000\tSox17\t978.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4322000\t4323000\tSox17\t978.0\t-165000\t0.000000"..b'0.000613496933\t1.000000000000\t0.737745564637\t0.600000000000\n-chr1\t4649000\t4650000\tSox17\t978.0\t162000\t0.000408997955\t0.998003530647\t0.556069446523\t0.400000000000\n-chr1\t4650000\t4651000\tSox17\t978.0\t163000\t0.000204498978\t0.999352809734\t0.282649407113\t0.200000000000\n-chr1\t4651000\t4652000\tSox17\t978.0\t164000\t0.000204498978\t0.999664588125\t0.294885312271\t0.200000000000\n-chr1\t4652000\t4653000\tSox17\t978.0\t165000\t0.000204498978\t0.999918251505\t0.313910171273\t0.200000000000\n-chr1\t4653000\t4654000\tSox17\t978.0\t166000\t0.000817995910\t0.989304103068\t1.362370144213\t0.800000000000\n-chr1\t4654000\t4655000\tSox17\t978.0\t167000\t0.000817995910\t1.000000000000\t1.303703486817\t0.800000000000\n-chr1\t4655000\t4656000\tSox17\t978.0\t168000\t0.000817995910\t0.999999999417\t1.267321063648\t0.800000000000\n-chr1\t4656000\t4657000\tSox17\t978.0\t169000\t0.001226993865\t0.002791015205\t1.717273288741\t1.200000000000\n-chr1\t4657000\t4658000\tSox17\t978.0\t170000\t0.001226993865\t0.000219787737\t1.661427004800\t1.200000000000\n-chr1\t4658000\t4659000\tSox17\t978.0\t171000\t0.000613496933\t0.981475867334\t0.840969224736\t0.600000000000\n-chr1\t4659000\t4660000\tSox17\t978.0\t172000\t0.000613496933\t0.944032684304\t0.789017457556\t0.600000000000\n-chr1\t4660000\t4661000\tSox17\t978.0\t173000\t0.000613496933\t0.999936032663\t0.804549297394\t0.600000000000\n-chr1\t4661000\t4662000\tSox17\t978.0\t174000\t0.000204498978\t0.999594131731\t0.283827112984\t0.200000000000\n-chr1\t4662000\t4663000\tSox17\t978.0\t175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4663000\t4664000\tSox17\t978.0\t176000\t0.000408997955\t1.000000000000\t0.579731975542\t0.400000000000\n-chr1\t4664000\t4665000\tSox17\t978.0\t177000\t0.001022494888\t0.000000000000\t1.548147889979\t1.000000000000\n-chr1\t4665000\t4666000\tSox17\t978.0\t178000\t0.001022494888\t0.000000000000\t1.606568565531\t1.000000000000\n-chr1\t4666000\t4667000\tSox17\t978.0\t179000\t0.001226993865\t0.000000000000\t1.964956938139\t1.200000000000\n-chr1\t4667000\t4668000\tSox17\t978.0\t180000\t0.001226993865\t0.000000000000\t2.074675343272\t1.200000000000\n-chr1\t4668000\t4669000\tSox17\t978.0\t181000\t0.001022494888\t0.000000000000\t1.737717018021\t1.000000000000\n-chr1\t4669000\t4670000\tSox17\t978.0\t182000\t0.000408997955\t1.000000000000\t0.732457065928\t0.400000000000\n-chr1\t4670000\t4671000\tSox17\t978.0\t183000\t0.000613496933\t1.000000000000\t1.064351673689\t0.600000000000\n-chr1\t4671000\t4672000\tSox17\t978.0\t184000\t0.000817995910\t1.000000000000\t1.329141603840\t0.800000000000\n-chr1\t4672000\t4673000\tSox17\t978.0\t185000\t0.000817995910\t1.000000000000\t1.309971292093\t0.800000000000\n-chr1\t4673000\t4674000\tSox17\t978.0\t186000\t0.000817995910\t1.000000000000\t1.449329938854\t0.800000000000\n-chr1\t4674000\t4675000\tSox17\t978.0\t187000\t0.001226993865\t0.000000000000\t2.209248880021\t1.200000000000\n-chr1\t4675000\t4676000\tSox17\t978.0\t188000\t0.001022494888\t0.000000000000\t1.821350457987\t1.000000000000\n-chr1\t4676000\t4677000\tSox17\t978.0\t189000\t0.000817995910\t1.000000000000\t1.584151329559\t0.800000000000\n-chr1\t4677000\t4678000\tSox17\t978.0\t190000\t0.001022494888\t0.000000000000\t1.991769215618\t1.000000000000\n-chr1\t4678000\t4679000\tSox17\t978.0\t191000\t0.001226993865\t0.000000000000\t2.270616904920\t1.200000000000\n-chr1\t4679000\t4680000\tSox17\t978.0\t192000\t0.000817995910\t1.000000000000\t1.497110047078\t0.800000000000\n-chr1\t4680000\t4681000\tSox17\t978.0\t193000\t0.001022494888\t0.000000000000\t2.027336523322\t1.000000000000\n-chr1\t4681000\t4682000\tSox17\t978.0\t194000\t0.000817995910\t1.000000000000\t1.574994385387\t0.800000000000\n-chr1\t4682000\t4683000\tSox17\t978.0\t195000\t0.000613496933\t1.000000000000\t1.253714856445\t0.600000000000\n-chr1\t4683000\t4684000\tSox17\t978.0\t196000\t0.000204498978\t1.000000000000\t0.417904952148\t0.200000000000\n-chr1\t4684000\t4685000\tSox17\t978.0\t197000\t0.001022494888\t0.000000000000\t1.935184862473\t1.000000000000\n-chr1\t4685000\t4686000\tSox17\t978.0\t198000\t0.000817995910\t1.000000000000\t1.335657003912\t0.800000000000\n-chr1\t4686000\t4687000\tSox17\t978.0\t199000\t0.001022494888\t0.000000000000\t1.783206992633\t1.000000000000\n-chr1\t4687000\t4688000\tSox17\t978.0\t200000\t0.001363326517\t0.000000000000\t2.316956024029\t1.333333333333\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 978.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t4287000\t4288000\tSox17\t978.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4288000\t4289000\tSox17\t978.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4289000\t4290000\tSox17\t978.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4290000\t4291000\tSox17\t978.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t4291000\t4292000\tSox17\t978.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4292000\t4293000\tSox17\t978.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4293000\t4294000\tSox17\t978.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4294000\t4295000\tSox17\t978.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4295000\t4296000\tSox17\t978.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4296000\t4297000\tSox17\t978.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4297000\t4298000\tSox17\t978.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4298000\t4299000\tSox17\t978.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4299000\t4300000\tSox17\t978.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4300000\t4301000\tSox17\t978.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4301000\t4302000\tSox17\t978.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4302000\t4303000\tSox17\t978.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4303000\t4304000\tSox17\t978.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4304000\t4305000\tSox17\t978.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4305000\t4306000\tSox17\t978.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4306000\t4307000\tSox17\t978.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4307000\t4308000\tSox17\t978.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4308000\t4309000\tSox17\t978.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4309000\t4310000\tSox17\t978.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4310000\t4311000\tSox17\t978.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4311000\t4312000\tSox17\t978.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4312000\t4313000\tSox17\t978.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4313000\t4314000\tSox17\t978.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4314000\t4315000\tSox17\t978.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4315000\t4316000\tSox17\t978.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4316000\t4317000\tSox17\t978.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4317000\t4318000\tSox17\t978.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4318000\t4319000\tSox17\t978.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4319000\t4320000\tSox17\t978.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4320000\t4321000\tSox17\t978.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4321000\t4322000\tSox17\t978.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4322000\t4323000\tSox17\t978.0\t-165000\t0.000000"..b'0.000613496933\t1.000000000000\t0.737745564637\t0.600000000000\n+chr1\t4649000\t4650000\tSox17\t978.0\t162000\t0.000408997955\t0.998003530647\t0.556069446523\t0.400000000000\n+chr1\t4650000\t4651000\tSox17\t978.0\t163000\t0.000204498978\t0.999352809734\t0.282649407113\t0.200000000000\n+chr1\t4651000\t4652000\tSox17\t978.0\t164000\t0.000204498978\t0.999664588125\t0.294885312271\t0.200000000000\n+chr1\t4652000\t4653000\tSox17\t978.0\t165000\t0.000204498978\t0.999918251505\t0.313910171273\t0.200000000000\n+chr1\t4653000\t4654000\tSox17\t978.0\t166000\t0.000817995910\t0.989304103068\t1.362370144213\t0.800000000000\n+chr1\t4654000\t4655000\tSox17\t978.0\t167000\t0.000817995910\t1.000000000000\t1.303703486817\t0.800000000000\n+chr1\t4655000\t4656000\tSox17\t978.0\t168000\t0.000817995910\t0.999999999417\t1.267321063648\t0.800000000000\n+chr1\t4656000\t4657000\tSox17\t978.0\t169000\t0.001226993865\t0.002791015205\t1.717273288741\t1.200000000000\n+chr1\t4657000\t4658000\tSox17\t978.0\t170000\t0.001226993865\t0.000219787737\t1.661427004800\t1.200000000000\n+chr1\t4658000\t4659000\tSox17\t978.0\t171000\t0.000613496933\t0.981475867334\t0.840969224736\t0.600000000000\n+chr1\t4659000\t4660000\tSox17\t978.0\t172000\t0.000613496933\t0.944032684304\t0.789017457556\t0.600000000000\n+chr1\t4660000\t4661000\tSox17\t978.0\t173000\t0.000613496933\t0.999936032663\t0.804549297394\t0.600000000000\n+chr1\t4661000\t4662000\tSox17\t978.0\t174000\t0.000204498978\t0.999594131731\t0.283827112984\t0.200000000000\n+chr1\t4662000\t4663000\tSox17\t978.0\t175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4663000\t4664000\tSox17\t978.0\t176000\t0.000408997955\t1.000000000000\t0.579731975542\t0.400000000000\n+chr1\t4664000\t4665000\tSox17\t978.0\t177000\t0.001022494888\t0.000000000000\t1.548147889979\t1.000000000000\n+chr1\t4665000\t4666000\tSox17\t978.0\t178000\t0.001022494888\t0.000000000000\t1.606568565531\t1.000000000000\n+chr1\t4666000\t4667000\tSox17\t978.0\t179000\t0.001226993865\t0.000000000000\t1.964956938139\t1.200000000000\n+chr1\t4667000\t4668000\tSox17\t978.0\t180000\t0.001226993865\t0.000000000000\t2.074675343272\t1.200000000000\n+chr1\t4668000\t4669000\tSox17\t978.0\t181000\t0.001022494888\t0.000000000000\t1.737717018021\t1.000000000000\n+chr1\t4669000\t4670000\tSox17\t978.0\t182000\t0.000408997955\t1.000000000000\t0.732457065928\t0.400000000000\n+chr1\t4670000\t4671000\tSox17\t978.0\t183000\t0.000613496933\t1.000000000000\t1.064351673689\t0.600000000000\n+chr1\t4671000\t4672000\tSox17\t978.0\t184000\t0.000817995910\t1.000000000000\t1.329141603840\t0.800000000000\n+chr1\t4672000\t4673000\tSox17\t978.0\t185000\t0.000817995910\t1.000000000000\t1.309971292093\t0.800000000000\n+chr1\t4673000\t4674000\tSox17\t978.0\t186000\t0.000817995910\t1.000000000000\t1.449329938854\t0.800000000000\n+chr1\t4674000\t4675000\tSox17\t978.0\t187000\t0.001226993865\t0.000000000000\t2.209248880021\t1.200000000000\n+chr1\t4675000\t4676000\tSox17\t978.0\t188000\t0.001022494888\t0.000000000000\t1.821350457987\t1.000000000000\n+chr1\t4676000\t4677000\tSox17\t978.0\t189000\t0.000817995910\t1.000000000000\t1.584151329559\t0.800000000000\n+chr1\t4677000\t4678000\tSox17\t978.0\t190000\t0.001022494888\t0.000000000000\t1.991769215618\t1.000000000000\n+chr1\t4678000\t4679000\tSox17\t978.0\t191000\t0.001226993865\t0.000000000000\t2.270616904920\t1.200000000000\n+chr1\t4679000\t4680000\tSox17\t978.0\t192000\t0.000817995910\t1.000000000000\t1.497110047078\t0.800000000000\n+chr1\t4680000\t4681000\tSox17\t978.0\t193000\t0.001022494888\t0.000000000000\t2.027336523322\t1.000000000000\n+chr1\t4681000\t4682000\tSox17\t978.0\t194000\t0.000817995910\t1.000000000000\t1.574994385387\t0.800000000000\n+chr1\t4682000\t4683000\tSox17\t978.0\t195000\t0.000613496933\t1.000000000000\t1.253714856445\t0.600000000000\n+chr1\t4683000\t4684000\tSox17\t978.0\t196000\t0.000204498978\t1.000000000000\t0.417904952148\t0.200000000000\n+chr1\t4684000\t4685000\tSox17\t978.0\t197000\t0.001022494888\t0.000000000000\t1.935184862473\t1.000000000000\n+chr1\t4685000\t4686000\tSox17\t978.0\t198000\t0.000817995910\t1.000000000000\t1.335657003912\t0.800000000000\n+chr1\t4686000\t4687000\tSox17\t978.0\t199000\t0.001022494888\t0.000000000000\t1.783206992633\t1.000000000000\n+chr1\t4687000\t4688000\tSox17\t978.0\t200000\t0.001363326517\t0.000000000000\t2.316956024029\t1.333333333333\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed --- a/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n-# FL-E13-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 673.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t14100000\t14101000\tEya1\t673.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14101000\t14102000\tEya1\t673.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14102000\t14103000\tEya1\t673.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14103000\t14104000\tEya1\t673.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n-chr1\t14104000\t14105000\tEya1\t673.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14105000\t14106000\tEya1\t673.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14106000\t14107000\tEya1\t673.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14107000\t14108000\tEya1\t673.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14108000\t14109000\tEya1\t673.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14109000\t14110000\tEya1\t673.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14110000\t14111000\tEya1\t673.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14111000\t14112000\tEya1\t673.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14112000\t14113000\tEya1\t673.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14113000\t14114000\tEya1\t673.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14114000\t14115000\tEya1\t673.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14115000\t14116000\tEya1\t673.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14116000\t14117000\tEya1\t673.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14117000\t14118000\tEya1\t673.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14118000\t14119000\tEya1\t673.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14119000\t14120000\tEya1\t673.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14120000\t14121000\tEya1\t673.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14121000\t14122000\tEya1\t673.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14122000\t14123000\tEya1\t673.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14123000\t14124000\tEya1\t673.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14124000\t14125000\tEya1\t673.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14125000\t14126000\tEya1\t673.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14126000\t14127000\tEya1\t673.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14127000\t14128000\tEya1\t673.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14128000\t14129000\tEya1\t673.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14129000\t14130000\tEya1\t673.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14130000\t14131000\tEya1\t673.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14131000\t14132000\tEya1\t673.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14132000\t14133000\tEya1\t673.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14133000\t14134000\tEya1\t673.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14134000\t14135000\tEya1\t673.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14135000\t14136000\tEya1\t673.0\t-165000\t0.000000000000\t1.000000000000\t0.0"..b'44260\t0.800000000000\n-chr1\t14462000\t14463000\tEya1\t673.0\t162000\t0.001188707281\t0.998003530647\t1.616154290340\t0.800000000000\n-chr1\t14463000\t14464000\tEya1\t673.0\t163000\t0.000594353640\t0.999352809734\t0.821489212945\t0.400000000000\n-chr1\t14464000\t14465000\tEya1\t673.0\t164000\t0.000594353640\t0.999664588125\t0.857051516792\t0.400000000000\n-chr1\t14465000\t14466000\tEya1\t673.0\t165000\t0.000000000000\t0.999918251505\t0.000000000000\t0.000000000000\n-chr1\t14466000\t14467000\tEya1\t673.0\t166000\t0.000000000000\t0.989304103068\t0.000000000000\t0.000000000000\n-chr1\t14467000\t14468000\tEya1\t673.0\t167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14468000\t14469000\tEya1\t673.0\t168000\t0.000000000000\t0.999999999417\t0.000000000000\t0.000000000000\n-chr1\t14469000\t14470000\tEya1\t673.0\t169000\t0.000000000000\t0.997208984795\t0.000000000000\t0.000000000000\n-chr1\t14470000\t14471000\tEya1\t673.0\t170000\t0.000000000000\t0.999780212263\t0.000000000000\t0.000000000000\n-chr1\t14471000\t14472000\tEya1\t673.0\t171000\t0.000000000000\t0.981475867334\t0.000000000000\t0.000000000000\n-chr1\t14472000\t14473000\tEya1\t673.0\t172000\t0.000000000000\t0.944032684304\t0.000000000000\t0.000000000000\n-chr1\t14473000\t14474000\tEya1\t673.0\t173000\t0.000000000000\t0.999936032663\t0.000000000000\t0.000000000000\n-chr1\t14474000\t14475000\tEya1\t673.0\t174000\t0.000000000000\t0.999594131731\t0.000000000000\t0.000000000000\n-chr1\t14475000\t14476000\tEya1\t673.0\t175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14476000\t14477000\tEya1\t673.0\t176000\t0.000297176820\t1.000000000000\t0.421231702882\t0.200000000000\n-chr1\t14477000\t14478000\tEya1\t673.0\t177000\t0.000297176820\t1.000000000000\t0.449952046478\t0.200000000000\n-chr1\t14478000\t14479000\tEya1\t673.0\t178000\t0.000594353640\t1.000000000000\t0.933862738240\t0.400000000000\n-chr1\t14479000\t14480000\tEya1\t673.0\t179000\t0.000594353640\t1.000000000000\t0.951821637197\t0.400000000000\n-chr1\t14480000\t14481000\tEya1\t673.0\t180000\t0.001485884101\t0.000000000000\t2.512422592521\t1.000000000000\n-chr1\t14481000\t14482000\tEya1\t673.0\t181000\t0.001188707281\t1.000000000000\t2.020192860178\t0.800000000000\n-chr1\t14482000\t14483000\tEya1\t673.0\t182000\t0.001188707281\t1.000000000000\t2.128805380321\t0.800000000000\n-chr1\t14483000\t14484000\tEya1\t673.0\t183000\t0.001783060921\t0.000000000000\t3.093420317586\t1.200000000000\n-chr1\t14484000\t14485000\tEya1\t673.0\t184000\t0.002080237741\t0.000000000000\t3.380127570538\t1.400000000000\n-chr1\t14485000\t14486000\tEya1\t673.0\t185000\t0.001188707281\t1.000000000000\t1.903643274393\t0.800000000000\n-chr1\t14486000\t14487000\tEya1\t673.0\t186000\t0.001188707281\t1.000000000000\t2.106158514412\t0.800000000000\n-chr1\t14487000\t14488000\tEya1\t673.0\t187000\t0.001188707281\t1.000000000000\t2.140312436513\t0.800000000000\n-chr1\t14488000\t14489000\tEya1\t673.0\t188000\t0.000594353640\t1.000000000000\t1.058710697124\t0.400000000000\n-chr1\t14489000\t14490000\tEya1\t673.0\t189000\t0.000297176820\t1.000000000000\t0.575520059550\t0.200000000000\n-chr1\t14490000\t14491000\tEya1\t673.0\t190000\t0.000297176820\t1.000000000000\t0.578885673960\t0.200000000000\n-chr1\t14491000\t14492000\tEya1\t673.0\t191000\t0.002080237741\t0.000000000000\t3.849589730333\t1.400000000000\n-chr1\t14492000\t14493000\tEya1\t673.0\t192000\t0.003268945022\t0.000000000000\t5.982878858272\t2.200000000000\n-chr1\t14493000\t14494000\tEya1\t673.0\t193000\t0.002971768202\t0.000000000000\t5.892229182196\t2.000000000000\n-chr1\t14494000\t14495000\tEya1\t673.0\t194000\t0.003268945022\t0.000000000000\t6.294126893758\t2.200000000000\n-chr1\t14495000\t14496000\tEya1\t673.0\t195000\t0.003268945022\t0.000000000000\t6.680269651133\t2.200000000000\n-chr1\t14496000\t14497000\tEya1\t673.0\t196000\t0.002971768202\t0.000000000000\t6.072972410121\t2.000000000000\n-chr1\t14497000\t14498000\tEya1\t673.0\t197000\t0.002080237741\t0.000000000000\t3.937080406684\t1.400000000000\n-chr1\t14498000\t14499000\tEya1\t673.0\t198000\t0.002971768202\t0.000000000000\t4.852424033528\t2.000000000000\n-chr1\t14499000\t14500000\tEya1\t673.0\t199000\t0.003343239227\t0.000000000000\t5.830530441735\t2.250000000000\n-chr1\t14500000\t14501000\tEya1\t673.0\t200000\t0.004457652303\t0.000000000000\t7.575723225668\t3.000000000000\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n+# FL-E13-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 673.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t14100000\t14101000\tEya1\t673.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14101000\t14102000\tEya1\t673.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14102000\t14103000\tEya1\t673.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14103000\t14104000\tEya1\t673.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t14104000\t14105000\tEya1\t673.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14105000\t14106000\tEya1\t673.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14106000\t14107000\tEya1\t673.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14107000\t14108000\tEya1\t673.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14108000\t14109000\tEya1\t673.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14109000\t14110000\tEya1\t673.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14110000\t14111000\tEya1\t673.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14111000\t14112000\tEya1\t673.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14112000\t14113000\tEya1\t673.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14113000\t14114000\tEya1\t673.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14114000\t14115000\tEya1\t673.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14115000\t14116000\tEya1\t673.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14116000\t14117000\tEya1\t673.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14117000\t14118000\tEya1\t673.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14118000\t14119000\tEya1\t673.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14119000\t14120000\tEya1\t673.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14120000\t14121000\tEya1\t673.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14121000\t14122000\tEya1\t673.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14122000\t14123000\tEya1\t673.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14123000\t14124000\tEya1\t673.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14124000\t14125000\tEya1\t673.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14125000\t14126000\tEya1\t673.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14126000\t14127000\tEya1\t673.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14127000\t14128000\tEya1\t673.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14128000\t14129000\tEya1\t673.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14129000\t14130000\tEya1\t673.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14130000\t14131000\tEya1\t673.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14131000\t14132000\tEya1\t673.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14132000\t14133000\tEya1\t673.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14133000\t14134000\tEya1\t673.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14134000\t14135000\tEya1\t673.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14135000\t14136000\tEya1\t673.0\t-165000\t0.000000000000\t1.000000000000\t0.0"..b'44260\t0.800000000000\n+chr1\t14462000\t14463000\tEya1\t673.0\t162000\t0.001188707281\t0.998003530647\t1.616154290340\t0.800000000000\n+chr1\t14463000\t14464000\tEya1\t673.0\t163000\t0.000594353640\t0.999352809734\t0.821489212945\t0.400000000000\n+chr1\t14464000\t14465000\tEya1\t673.0\t164000\t0.000594353640\t0.999664588125\t0.857051516792\t0.400000000000\n+chr1\t14465000\t14466000\tEya1\t673.0\t165000\t0.000000000000\t0.999918251505\t0.000000000000\t0.000000000000\n+chr1\t14466000\t14467000\tEya1\t673.0\t166000\t0.000000000000\t0.989304103068\t0.000000000000\t0.000000000000\n+chr1\t14467000\t14468000\tEya1\t673.0\t167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14468000\t14469000\tEya1\t673.0\t168000\t0.000000000000\t0.999999999417\t0.000000000000\t0.000000000000\n+chr1\t14469000\t14470000\tEya1\t673.0\t169000\t0.000000000000\t0.997208984795\t0.000000000000\t0.000000000000\n+chr1\t14470000\t14471000\tEya1\t673.0\t170000\t0.000000000000\t0.999780212263\t0.000000000000\t0.000000000000\n+chr1\t14471000\t14472000\tEya1\t673.0\t171000\t0.000000000000\t0.981475867334\t0.000000000000\t0.000000000000\n+chr1\t14472000\t14473000\tEya1\t673.0\t172000\t0.000000000000\t0.944032684304\t0.000000000000\t0.000000000000\n+chr1\t14473000\t14474000\tEya1\t673.0\t173000\t0.000000000000\t0.999936032663\t0.000000000000\t0.000000000000\n+chr1\t14474000\t14475000\tEya1\t673.0\t174000\t0.000000000000\t0.999594131731\t0.000000000000\t0.000000000000\n+chr1\t14475000\t14476000\tEya1\t673.0\t175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14476000\t14477000\tEya1\t673.0\t176000\t0.000297176820\t1.000000000000\t0.421231702882\t0.200000000000\n+chr1\t14477000\t14478000\tEya1\t673.0\t177000\t0.000297176820\t1.000000000000\t0.449952046478\t0.200000000000\n+chr1\t14478000\t14479000\tEya1\t673.0\t178000\t0.000594353640\t1.000000000000\t0.933862738240\t0.400000000000\n+chr1\t14479000\t14480000\tEya1\t673.0\t179000\t0.000594353640\t1.000000000000\t0.951821637197\t0.400000000000\n+chr1\t14480000\t14481000\tEya1\t673.0\t180000\t0.001485884101\t0.000000000000\t2.512422592521\t1.000000000000\n+chr1\t14481000\t14482000\tEya1\t673.0\t181000\t0.001188707281\t1.000000000000\t2.020192860178\t0.800000000000\n+chr1\t14482000\t14483000\tEya1\t673.0\t182000\t0.001188707281\t1.000000000000\t2.128805380321\t0.800000000000\n+chr1\t14483000\t14484000\tEya1\t673.0\t183000\t0.001783060921\t0.000000000000\t3.093420317586\t1.200000000000\n+chr1\t14484000\t14485000\tEya1\t673.0\t184000\t0.002080237741\t0.000000000000\t3.380127570538\t1.400000000000\n+chr1\t14485000\t14486000\tEya1\t673.0\t185000\t0.001188707281\t1.000000000000\t1.903643274393\t0.800000000000\n+chr1\t14486000\t14487000\tEya1\t673.0\t186000\t0.001188707281\t1.000000000000\t2.106158514412\t0.800000000000\n+chr1\t14487000\t14488000\tEya1\t673.0\t187000\t0.001188707281\t1.000000000000\t2.140312436513\t0.800000000000\n+chr1\t14488000\t14489000\tEya1\t673.0\t188000\t0.000594353640\t1.000000000000\t1.058710697124\t0.400000000000\n+chr1\t14489000\t14490000\tEya1\t673.0\t189000\t0.000297176820\t1.000000000000\t0.575520059550\t0.200000000000\n+chr1\t14490000\t14491000\tEya1\t673.0\t190000\t0.000297176820\t1.000000000000\t0.578885673960\t0.200000000000\n+chr1\t14491000\t14492000\tEya1\t673.0\t191000\t0.002080237741\t0.000000000000\t3.849589730333\t1.400000000000\n+chr1\t14492000\t14493000\tEya1\t673.0\t192000\t0.003268945022\t0.000000000000\t5.982878858272\t2.200000000000\n+chr1\t14493000\t14494000\tEya1\t673.0\t193000\t0.002971768202\t0.000000000000\t5.892229182196\t2.000000000000\n+chr1\t14494000\t14495000\tEya1\t673.0\t194000\t0.003268945022\t0.000000000000\t6.294126893758\t2.200000000000\n+chr1\t14495000\t14496000\tEya1\t673.0\t195000\t0.003268945022\t0.000000000000\t6.680269651133\t2.200000000000\n+chr1\t14496000\t14497000\tEya1\t673.0\t196000\t0.002971768202\t0.000000000000\t6.072972410121\t2.000000000000\n+chr1\t14497000\t14498000\tEya1\t673.0\t197000\t0.002080237741\t0.000000000000\t3.937080406684\t1.400000000000\n+chr1\t14498000\t14499000\tEya1\t673.0\t198000\t0.002971768202\t0.000000000000\t4.852424033528\t2.000000000000\n+chr1\t14499000\t14500000\tEya1\t673.0\t199000\t0.003343239227\t0.000000000000\t5.830530441735\t2.250000000000\n+chr1\t14500000\t14501000\tEya1\t673.0\t200000\t0.004457652303\t0.000000000000\t7.575723225668\t3.000000000000\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed --- a/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n-# FL-E13-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 472.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t18893000\t18894000\tTfap2d\t472.0\t-200000\t0.001412429379\t1.000000000000\t8.554173074049\t0.666666666667\n-chr1\t18894000\t18895000\tTfap2d\t472.0\t-199000\t0.001059322034\t1.000000000000\t5.040852007510\t0.500000000000\n-chr1\t18895000\t18896000\tTfap2d\t472.0\t-198000\t0.000847457627\t1.000000000000\t3.282415254892\t0.400000000000\n-chr1\t18896000\t18897000\tTfap2d\t472.0\t-197000\t0.000847457627\t0.999999994943\t3.136530131373\t0.400000000000\n-chr1\t18897000\t18898000\tTfap2d\t472.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18898000\t18899000\tTfap2d\t472.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18899000\t18900000\tTfap2d\t472.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18900000\t18901000\tTfap2d\t472.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18901000\t18902000\tTfap2d\t472.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18902000\t18903000\tTfap2d\t472.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18903000\t18904000\tTfap2d\t472.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18904000\t18905000\tTfap2d\t472.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18905000\t18906000\tTfap2d\t472.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18906000\t18907000\tTfap2d\t472.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18907000\t18908000\tTfap2d\t472.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18908000\t18909000\tTfap2d\t472.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18909000\t18910000\tTfap2d\t472.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18910000\t18911000\tTfap2d\t472.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18911000\t18912000\tTfap2d\t472.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18912000\t18913000\tTfap2d\t472.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18913000\t18914000\tTfap2d\t472.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18914000\t18915000\tTfap2d\t472.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18915000\t18916000\tTfap2d\t472.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18916000\t18917000\tTfap2d\t472.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18917000\t18918000\tTfap2d\t472.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18918000\t18919000\tTfap2d\t472.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18919000\t18920000\tTfap2d\t472.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18920000\t18921000\tTfap2d\t472.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18921000\t18922000\tTfap2d\t472.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18922000\t18923000\tTfap2d\t472.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18923000\t18924000\tTfap2d\t472.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18924000\t18925000\tTfap2d\t472.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18925000\t18926000\tTfap2d\t472.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18926000\t18927000\tTfap2d\t472.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18927000\t18928000\tTfap2d\t472.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr"..b'4\t0.998003530647\t2.304389486014\t0.800000000000\n-chr1\t19256000\t19257000\tTfap2d\t472.0\t163000\t0.002542372881\t0.000647190266\t3.513954917238\t1.200000000000\n-chr1\t19257000\t19258000\tTfap2d\t472.0\t164000\t0.002118644068\t0.000335411875\t3.055061815685\t1.000000000000\n-chr1\t19258000\t19259000\tTfap2d\t472.0\t165000\t0.002118644068\t0.000081748495\t3.252162579500\t1.000000000000\n-chr1\t19259000\t19260000\tTfap2d\t472.0\t166000\t0.001694915254\t0.989304103068\t2.822877120847\t0.800000000000\n-chr1\t19260000\t19261000\tTfap2d\t472.0\t167000\t0.001694915254\t1.000000000000\t2.701317818024\t0.800000000000\n-chr1\t19261000\t19262000\tTfap2d\t472.0\t168000\t0.000847457627\t0.999999999417\t1.312966101957\t0.400000000000\n-chr1\t19262000\t19263000\tTfap2d\t472.0\t169000\t0.000423728814\t0.997208984795\t0.593041411154\t0.200000000000\n-chr1\t19263000\t19264000\tTfap2d\t472.0\t170000\t0.000423728814\t0.999780212263\t0.573755512251\t0.200000000000\n-chr1\t19264000\t19265000\tTfap2d\t472.0\t171000\t0.000000000000\t0.981475867334\t0.000000000000\t0.000000000000\n-chr1\t19265000\t19266000\tTfap2d\t472.0\t172000\t0.000000000000\t0.944032684304\t0.000000000000\t0.000000000000\n-chr1\t19266000\t19267000\tTfap2d\t472.0\t173000\t0.000000000000\t0.999936032663\t0.000000000000\t0.000000000000\n-chr1\t19267000\t19268000\tTfap2d\t472.0\t174000\t0.000000000000\t0.999594131731\t0.000000000000\t0.000000000000\n-chr1\t19268000\t19269000\tTfap2d\t472.0\t175000\t0.000423728814\t1.000000000000\t0.608378689139\t0.200000000000\n-chr1\t19269000\t19270000\tTfap2d\t472.0\t176000\t0.000423728814\t1.000000000000\t0.600612152627\t0.200000000000\n-chr1\t19270000\t19271000\tTfap2d\t472.0\t177000\t0.000423728814\t1.000000000000\t0.641562981525\t0.200000000000\n-chr1\t19271000\t19272000\tTfap2d\t472.0\t178000\t0.000423728814\t1.000000000000\t0.665772905546\t0.200000000000\n-chr1\t19272000\t19273000\tTfap2d\t472.0\t179000\t0.000423728814\t1.000000000000\t0.678576230756\t0.200000000000\n-chr1\t19273000\t19274000\tTfap2d\t472.0\t180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19274000\t19275000\tTfap2d\t472.0\t181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19275000\t19276000\tTfap2d\t472.0\t182000\t0.000423728814\t1.000000000000\t0.758837934828\t0.200000000000\n-chr1\t19276000\t19277000\tTfap2d\t472.0\t183000\t0.000423728814\t1.000000000000\t0.735124249200\t0.200000000000\n-chr1\t19277000\t19278000\tTfap2d\t472.0\t184000\t0.000423728814\t1.000000000000\t0.688506614701\t0.200000000000\n-chr1\t19278000\t19279000\tTfap2d\t472.0\t185000\t0.000423728814\t1.000000000000\t0.678576230756\t0.200000000000\n-chr1\t19279000\t19280000\tTfap2d\t472.0\t186000\t0.000423728814\t1.000000000000\t0.750765190784\t0.200000000000\n-chr1\t19280000\t19281000\tTfap2d\t472.0\t187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19281000\t19282000\tTfap2d\t472.0\t188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19282000\t19283000\tTfap2d\t472.0\t189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19283000\t19284000\tTfap2d\t472.0\t190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19284000\t19285000\tTfap2d\t472.0\t191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19285000\t19286000\tTfap2d\t472.0\t192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19286000\t19287000\tTfap2d\t472.0\t193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19287000\t19288000\tTfap2d\t472.0\t194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19288000\t19289000\tTfap2d\t472.0\t195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19289000\t19290000\tTfap2d\t472.0\t196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19290000\t19291000\tTfap2d\t472.0\t197000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19291000\t19292000\tTfap2d\t472.0\t198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19292000\t19293000\tTfap2d\t472.0\t199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19293000\t19294000\tTfap2d\t472.0\t200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n+# FL-E13-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 472.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t18893000\t18894000\tTfap2d\t472.0\t-200000\t0.001412429379\t1.000000000000\t8.554173074049\t0.666666666667\n+chr1\t18894000\t18895000\tTfap2d\t472.0\t-199000\t0.001059322034\t1.000000000000\t5.040852007510\t0.500000000000\n+chr1\t18895000\t18896000\tTfap2d\t472.0\t-198000\t0.000847457627\t1.000000000000\t3.282415254892\t0.400000000000\n+chr1\t18896000\t18897000\tTfap2d\t472.0\t-197000\t0.000847457627\t0.999999994943\t3.136530131373\t0.400000000000\n+chr1\t18897000\t18898000\tTfap2d\t472.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18898000\t18899000\tTfap2d\t472.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18899000\t18900000\tTfap2d\t472.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18900000\t18901000\tTfap2d\t472.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18901000\t18902000\tTfap2d\t472.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18902000\t18903000\tTfap2d\t472.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18903000\t18904000\tTfap2d\t472.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18904000\t18905000\tTfap2d\t472.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18905000\t18906000\tTfap2d\t472.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18906000\t18907000\tTfap2d\t472.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18907000\t18908000\tTfap2d\t472.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18908000\t18909000\tTfap2d\t472.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18909000\t18910000\tTfap2d\t472.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18910000\t18911000\tTfap2d\t472.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18911000\t18912000\tTfap2d\t472.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18912000\t18913000\tTfap2d\t472.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18913000\t18914000\tTfap2d\t472.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18914000\t18915000\tTfap2d\t472.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18915000\t18916000\tTfap2d\t472.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18916000\t18917000\tTfap2d\t472.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18917000\t18918000\tTfap2d\t472.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18918000\t18919000\tTfap2d\t472.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18919000\t18920000\tTfap2d\t472.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18920000\t18921000\tTfap2d\t472.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18921000\t18922000\tTfap2d\t472.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18922000\t18923000\tTfap2d\t472.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18923000\t18924000\tTfap2d\t472.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18924000\t18925000\tTfap2d\t472.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18925000\t18926000\tTfap2d\t472.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18926000\t18927000\tTfap2d\t472.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18927000\t18928000\tTfap2d\t472.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr"..b'4\t0.998003530647\t2.304389486014\t0.800000000000\n+chr1\t19256000\t19257000\tTfap2d\t472.0\t163000\t0.002542372881\t0.000647190266\t3.513954917238\t1.200000000000\n+chr1\t19257000\t19258000\tTfap2d\t472.0\t164000\t0.002118644068\t0.000335411875\t3.055061815685\t1.000000000000\n+chr1\t19258000\t19259000\tTfap2d\t472.0\t165000\t0.002118644068\t0.000081748495\t3.252162579500\t1.000000000000\n+chr1\t19259000\t19260000\tTfap2d\t472.0\t166000\t0.001694915254\t0.989304103068\t2.822877120847\t0.800000000000\n+chr1\t19260000\t19261000\tTfap2d\t472.0\t167000\t0.001694915254\t1.000000000000\t2.701317818024\t0.800000000000\n+chr1\t19261000\t19262000\tTfap2d\t472.0\t168000\t0.000847457627\t0.999999999417\t1.312966101957\t0.400000000000\n+chr1\t19262000\t19263000\tTfap2d\t472.0\t169000\t0.000423728814\t0.997208984795\t0.593041411154\t0.200000000000\n+chr1\t19263000\t19264000\tTfap2d\t472.0\t170000\t0.000423728814\t0.999780212263\t0.573755512251\t0.200000000000\n+chr1\t19264000\t19265000\tTfap2d\t472.0\t171000\t0.000000000000\t0.981475867334\t0.000000000000\t0.000000000000\n+chr1\t19265000\t19266000\tTfap2d\t472.0\t172000\t0.000000000000\t0.944032684304\t0.000000000000\t0.000000000000\n+chr1\t19266000\t19267000\tTfap2d\t472.0\t173000\t0.000000000000\t0.999936032663\t0.000000000000\t0.000000000000\n+chr1\t19267000\t19268000\tTfap2d\t472.0\t174000\t0.000000000000\t0.999594131731\t0.000000000000\t0.000000000000\n+chr1\t19268000\t19269000\tTfap2d\t472.0\t175000\t0.000423728814\t1.000000000000\t0.608378689139\t0.200000000000\n+chr1\t19269000\t19270000\tTfap2d\t472.0\t176000\t0.000423728814\t1.000000000000\t0.600612152627\t0.200000000000\n+chr1\t19270000\t19271000\tTfap2d\t472.0\t177000\t0.000423728814\t1.000000000000\t0.641562981525\t0.200000000000\n+chr1\t19271000\t19272000\tTfap2d\t472.0\t178000\t0.000423728814\t1.000000000000\t0.665772905546\t0.200000000000\n+chr1\t19272000\t19273000\tTfap2d\t472.0\t179000\t0.000423728814\t1.000000000000\t0.678576230756\t0.200000000000\n+chr1\t19273000\t19274000\tTfap2d\t472.0\t180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19274000\t19275000\tTfap2d\t472.0\t181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19275000\t19276000\tTfap2d\t472.0\t182000\t0.000423728814\t1.000000000000\t0.758837934828\t0.200000000000\n+chr1\t19276000\t19277000\tTfap2d\t472.0\t183000\t0.000423728814\t1.000000000000\t0.735124249200\t0.200000000000\n+chr1\t19277000\t19278000\tTfap2d\t472.0\t184000\t0.000423728814\t1.000000000000\t0.688506614701\t0.200000000000\n+chr1\t19278000\t19279000\tTfap2d\t472.0\t185000\t0.000423728814\t1.000000000000\t0.678576230756\t0.200000000000\n+chr1\t19279000\t19280000\tTfap2d\t472.0\t186000\t0.000423728814\t1.000000000000\t0.750765190784\t0.200000000000\n+chr1\t19280000\t19281000\tTfap2d\t472.0\t187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19281000\t19282000\tTfap2d\t472.0\t188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19282000\t19283000\tTfap2d\t472.0\t189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19283000\t19284000\tTfap2d\t472.0\t190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19284000\t19285000\tTfap2d\t472.0\t191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19285000\t19286000\tTfap2d\t472.0\t192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19286000\t19287000\tTfap2d\t472.0\t193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19287000\t19288000\tTfap2d\t472.0\t194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19288000\t19289000\tTfap2d\t472.0\t195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19289000\t19290000\tTfap2d\t472.0\t196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19290000\t19291000\tTfap2d\t472.0\t197000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19291000\t19292000\tTfap2d\t472.0\t198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19292000\t19293000\tTfap2d\t472.0\t199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19293000\t19294000\tTfap2d\t472.0\t200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed --- a/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n-# FL-E13-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 810.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t4287000\t4288000\tSox17\t810.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4288000\t4289000\tSox17\t810.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4289000\t4290000\tSox17\t810.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4290000\t4291000\tSox17\t810.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n-chr1\t4291000\t4292000\tSox17\t810.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4292000\t4293000\tSox17\t810.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4293000\t4294000\tSox17\t810.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4294000\t4295000\tSox17\t810.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4295000\t4296000\tSox17\t810.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4296000\t4297000\tSox17\t810.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4297000\t4298000\tSox17\t810.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4298000\t4299000\tSox17\t810.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4299000\t4300000\tSox17\t810.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4300000\t4301000\tSox17\t810.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4301000\t4302000\tSox17\t810.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4302000\t4303000\tSox17\t810.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4303000\t4304000\tSox17\t810.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4304000\t4305000\tSox17\t810.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4305000\t4306000\tSox17\t810.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4306000\t4307000\tSox17\t810.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4307000\t4308000\tSox17\t810.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4308000\t4309000\tSox17\t810.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4309000\t4310000\tSox17\t810.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4310000\t4311000\tSox17\t810.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4311000\t4312000\tSox17\t810.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4312000\t4313000\tSox17\t810.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4313000\t4314000\tSox17\t810.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4314000\t4315000\tSox17\t810.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4315000\t4316000\tSox17\t810.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4316000\t4317000\tSox17\t810.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4317000\t4318000\tSox17\t810.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4318000\t4319000\tSox17\t810.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4319000\t4320000\tSox17\t810.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4320000\t4321000\tSox17\t810.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4321000\t4322000\tSox17\t810.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4322000\t4323000\tSox17\t810.0\t-165000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t432300"..b'0.000493827160\t1.000000000000\t0.593839639683\t0.400000000000\n-chr1\t4649000\t4650000\tSox17\t810.0\t162000\t0.000493827160\t0.998003530647\t0.671402368765\t0.400000000000\n-chr1\t4650000\t4651000\tSox17\t810.0\t163000\t0.000493827160\t0.999352809734\t0.682545975694\t0.400000000000\n-chr1\t4651000\t4652000\tSox17\t810.0\t164000\t0.000493827160\t0.999664588125\t0.712093420742\t0.400000000000\n-chr1\t4652000\t4653000\tSox17\t810.0\t165000\t0.000987654321\t0.999918251505\t1.516069864221\t0.800000000000\n-chr1\t4653000\t4654000\tSox17\t810.0\t166000\t0.000987654321\t0.989304103068\t1.644935803753\t0.800000000000\n-chr1\t4654000\t4655000\tSox17\t810.0\t167000\t0.000987654321\t1.000000000000\t1.574101247046\t0.800000000000\n-chr1\t4655000\t4656000\tSox17\t810.0\t168000\t0.001481481481\t0.000000000583\t2.295259259717\t1.200000000000\n-chr1\t4656000\t4657000\tSox17\t810.0\t169000\t0.001728395062\t0.002791015205\t2.419023237597\t1.400000000000\n-chr1\t4657000\t4658000\tSox17\t810.0\t170000\t0.001234567901\t0.000219787737\t1.671682727052\t1.000000000000\n-chr1\t4658000\t4659000\tSox17\t810.0\t171000\t0.000987654321\t0.981475867334\t1.353856628464\t0.800000000000\n-chr1\t4659000\t4660000\tSox17\t810.0\t172000\t0.000987654321\t0.944032684304\t1.270220697103\t0.800000000000\n-chr1\t4660000\t4661000\tSox17\t810.0\t173000\t0.000493827160\t0.999936032663\t0.647612520865\t0.400000000000\n-chr1\t4661000\t4662000\tSox17\t810.0\t174000\t0.000246913580\t0.999594131731\t0.342694958640\t0.200000000000\n-chr1\t4662000\t4663000\tSox17\t810.0\t175000\t0.000246913580\t1.000000000000\t0.354512026264\t0.200000000000\n-chr1\t4663000\t4664000\tSox17\t810.0\t176000\t0.000246913580\t1.000000000000\t0.349986340790\t0.200000000000\n-chr1\t4664000\t4665000\tSox17\t810.0\t177000\t0.000246913580\t1.000000000000\t0.373849046024\t0.200000000000\n-chr1\t4665000\t4666000\tSox17\t810.0\t178000\t0.000493827160\t1.000000000000\t0.775913114612\t0.400000000000\n-chr1\t4666000\t4667000\tSox17\t810.0\t179000\t0.000246913580\t1.000000000000\t0.395417260391\t0.200000000000\n-chr1\t4667000\t4668000\tSox17\t810.0\t180000\t0.000246913580\t1.000000000000\t0.417496396239\t0.200000000000\n-chr1\t4668000\t4669000\tSox17\t810.0\t181000\t0.000246913580\t1.000000000000\t0.419626479907\t0.200000000000\n-chr1\t4669000\t4670000\tSox17\t810.0\t182000\t0.000246913580\t1.000000000000\t0.442187043505\t0.200000000000\n-chr1\t4670000\t4671000\tSox17\t810.0\t183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4671000\t4672000\tSox17\t810.0\t184000\t0.000246913580\t1.000000000000\t0.401203854492\t0.200000000000\n-chr1\t4672000\t4673000\tSox17\t810.0\t185000\t0.000246913580\t1.000000000000\t0.395417260391\t0.200000000000\n-chr1\t4673000\t4674000\tSox17\t810.0\t186000\t0.000246913580\t1.000000000000\t0.437482925987\t0.200000000000\n-chr1\t4674000\t4675000\tSox17\t810.0\t187000\t0.000246913580\t1.000000000000\t0.444577243757\t0.200000000000\n-chr1\t4675000\t4676000\tSox17\t810.0\t188000\t0.000493827160\t1.000000000000\t0.879644813784\t0.400000000000\n-chr1\t4676000\t4677000\tSox17\t810.0\t189000\t0.000246913580\t1.000000000000\t0.478179012441\t0.200000000000\n-chr1\t4677000\t4678000\tSox17\t810.0\t190000\t0.000246913580\t1.000000000000\t0.480975380957\t0.200000000000\n-chr1\t4678000\t4679000\tSox17\t810.0\t191000\t0.000740740741\t1.000000000000\t1.370779835192\t0.600000000000\n-chr1\t4679000\t4680000\tSox17\t810.0\t192000\t0.000740740741\t1.000000000000\t1.355716320410\t0.600000000000\n-chr1\t4680000\t4681000\tSox17\t810.0\t193000\t0.000740740741\t1.000000000000\t1.468692681340\t0.600000000000\n-chr1\t4681000\t4682000\tSox17\t810.0\t194000\t0.000740740741\t1.000000000000\t1.426244915656\t0.600000000000\n-chr1\t4682000\t4683000\tSox17\t810.0\t195000\t0.000740740741\t1.000000000000\t1.513744604449\t0.600000000000\n-chr1\t4683000\t4684000\tSox17\t810.0\t196000\t0.000493827160\t1.000000000000\t1.009163069632\t0.400000000000\n-chr1\t4684000\t4685000\tSox17\t810.0\t197000\t0.000493827160\t1.000000000000\t0.934622615061\t0.400000000000\n-chr1\t4685000\t4686000\tSox17\t810.0\t198000\t0.000246913580\t1.000000000000\t0.403170540070\t0.200000000000\n-chr1\t4686000\t4687000\tSox17\t810.0\t199000\t0.000308641975\t1.000000000000\t0.538264332961\t0.250000000000\n-chr1\t4687000\t4688000\tSox17\t810.0\t200000\t0.000411522634\t1.000000000000\t0.699377466512\t0.333333333333\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n+# FL-E13-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 810.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t4287000\t4288000\tSox17\t810.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4288000\t4289000\tSox17\t810.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4289000\t4290000\tSox17\t810.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4290000\t4291000\tSox17\t810.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t4291000\t4292000\tSox17\t810.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4292000\t4293000\tSox17\t810.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4293000\t4294000\tSox17\t810.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4294000\t4295000\tSox17\t810.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4295000\t4296000\tSox17\t810.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4296000\t4297000\tSox17\t810.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4297000\t4298000\tSox17\t810.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4298000\t4299000\tSox17\t810.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4299000\t4300000\tSox17\t810.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4300000\t4301000\tSox17\t810.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4301000\t4302000\tSox17\t810.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4302000\t4303000\tSox17\t810.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4303000\t4304000\tSox17\t810.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4304000\t4305000\tSox17\t810.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4305000\t4306000\tSox17\t810.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4306000\t4307000\tSox17\t810.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4307000\t4308000\tSox17\t810.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4308000\t4309000\tSox17\t810.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4309000\t4310000\tSox17\t810.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4310000\t4311000\tSox17\t810.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4311000\t4312000\tSox17\t810.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4312000\t4313000\tSox17\t810.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4313000\t4314000\tSox17\t810.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4314000\t4315000\tSox17\t810.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4315000\t4316000\tSox17\t810.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4316000\t4317000\tSox17\t810.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4317000\t4318000\tSox17\t810.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4318000\t4319000\tSox17\t810.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4319000\t4320000\tSox17\t810.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4320000\t4321000\tSox17\t810.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4321000\t4322000\tSox17\t810.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4322000\t4323000\tSox17\t810.0\t-165000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t432300"..b'0.000493827160\t1.000000000000\t0.593839639683\t0.400000000000\n+chr1\t4649000\t4650000\tSox17\t810.0\t162000\t0.000493827160\t0.998003530647\t0.671402368765\t0.400000000000\n+chr1\t4650000\t4651000\tSox17\t810.0\t163000\t0.000493827160\t0.999352809734\t0.682545975694\t0.400000000000\n+chr1\t4651000\t4652000\tSox17\t810.0\t164000\t0.000493827160\t0.999664588125\t0.712093420742\t0.400000000000\n+chr1\t4652000\t4653000\tSox17\t810.0\t165000\t0.000987654321\t0.999918251505\t1.516069864221\t0.800000000000\n+chr1\t4653000\t4654000\tSox17\t810.0\t166000\t0.000987654321\t0.989304103068\t1.644935803753\t0.800000000000\n+chr1\t4654000\t4655000\tSox17\t810.0\t167000\t0.000987654321\t1.000000000000\t1.574101247046\t0.800000000000\n+chr1\t4655000\t4656000\tSox17\t810.0\t168000\t0.001481481481\t0.000000000583\t2.295259259717\t1.200000000000\n+chr1\t4656000\t4657000\tSox17\t810.0\t169000\t0.001728395062\t0.002791015205\t2.419023237597\t1.400000000000\n+chr1\t4657000\t4658000\tSox17\t810.0\t170000\t0.001234567901\t0.000219787737\t1.671682727052\t1.000000000000\n+chr1\t4658000\t4659000\tSox17\t810.0\t171000\t0.000987654321\t0.981475867334\t1.353856628464\t0.800000000000\n+chr1\t4659000\t4660000\tSox17\t810.0\t172000\t0.000987654321\t0.944032684304\t1.270220697103\t0.800000000000\n+chr1\t4660000\t4661000\tSox17\t810.0\t173000\t0.000493827160\t0.999936032663\t0.647612520865\t0.400000000000\n+chr1\t4661000\t4662000\tSox17\t810.0\t174000\t0.000246913580\t0.999594131731\t0.342694958640\t0.200000000000\n+chr1\t4662000\t4663000\tSox17\t810.0\t175000\t0.000246913580\t1.000000000000\t0.354512026264\t0.200000000000\n+chr1\t4663000\t4664000\tSox17\t810.0\t176000\t0.000246913580\t1.000000000000\t0.349986340790\t0.200000000000\n+chr1\t4664000\t4665000\tSox17\t810.0\t177000\t0.000246913580\t1.000000000000\t0.373849046024\t0.200000000000\n+chr1\t4665000\t4666000\tSox17\t810.0\t178000\t0.000493827160\t1.000000000000\t0.775913114612\t0.400000000000\n+chr1\t4666000\t4667000\tSox17\t810.0\t179000\t0.000246913580\t1.000000000000\t0.395417260391\t0.200000000000\n+chr1\t4667000\t4668000\tSox17\t810.0\t180000\t0.000246913580\t1.000000000000\t0.417496396239\t0.200000000000\n+chr1\t4668000\t4669000\tSox17\t810.0\t181000\t0.000246913580\t1.000000000000\t0.419626479907\t0.200000000000\n+chr1\t4669000\t4670000\tSox17\t810.0\t182000\t0.000246913580\t1.000000000000\t0.442187043505\t0.200000000000\n+chr1\t4670000\t4671000\tSox17\t810.0\t183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4671000\t4672000\tSox17\t810.0\t184000\t0.000246913580\t1.000000000000\t0.401203854492\t0.200000000000\n+chr1\t4672000\t4673000\tSox17\t810.0\t185000\t0.000246913580\t1.000000000000\t0.395417260391\t0.200000000000\n+chr1\t4673000\t4674000\tSox17\t810.0\t186000\t0.000246913580\t1.000000000000\t0.437482925987\t0.200000000000\n+chr1\t4674000\t4675000\tSox17\t810.0\t187000\t0.000246913580\t1.000000000000\t0.444577243757\t0.200000000000\n+chr1\t4675000\t4676000\tSox17\t810.0\t188000\t0.000493827160\t1.000000000000\t0.879644813784\t0.400000000000\n+chr1\t4676000\t4677000\tSox17\t810.0\t189000\t0.000246913580\t1.000000000000\t0.478179012441\t0.200000000000\n+chr1\t4677000\t4678000\tSox17\t810.0\t190000\t0.000246913580\t1.000000000000\t0.480975380957\t0.200000000000\n+chr1\t4678000\t4679000\tSox17\t810.0\t191000\t0.000740740741\t1.000000000000\t1.370779835192\t0.600000000000\n+chr1\t4679000\t4680000\tSox17\t810.0\t192000\t0.000740740741\t1.000000000000\t1.355716320410\t0.600000000000\n+chr1\t4680000\t4681000\tSox17\t810.0\t193000\t0.000740740741\t1.000000000000\t1.468692681340\t0.600000000000\n+chr1\t4681000\t4682000\tSox17\t810.0\t194000\t0.000740740741\t1.000000000000\t1.426244915656\t0.600000000000\n+chr1\t4682000\t4683000\tSox17\t810.0\t195000\t0.000740740741\t1.000000000000\t1.513744604449\t0.600000000000\n+chr1\t4683000\t4684000\tSox17\t810.0\t196000\t0.000493827160\t1.000000000000\t1.009163069632\t0.400000000000\n+chr1\t4684000\t4685000\tSox17\t810.0\t197000\t0.000493827160\t1.000000000000\t0.934622615061\t0.400000000000\n+chr1\t4685000\t4686000\tSox17\t810.0\t198000\t0.000246913580\t1.000000000000\t0.403170540070\t0.200000000000\n+chr1\t4686000\t4687000\tSox17\t810.0\t199000\t0.000308641975\t1.000000000000\t0.538264332961\t0.250000000000\n+chr1\t4687000\t4688000\tSox17\t810.0\t200000\t0.000411522634\t1.000000000000\t0.699377466512\t0.333333333333\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed --- a/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n-# MB-E10-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 832.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t14100000\t14101000\tEya1\t832.0\t-200000\t0.000400641026\t1.000000000000\t2.426424093120\t0.333333333333\n-chr1\t14101000\t14102000\tEya1\t832.0\t-199000\t0.000300480769\t1.000000000000\t1.429857059822\t0.250000000000\n-chr1\t14102000\t14103000\tEya1\t832.0\t-198000\t0.000240384615\t1.000000000000\t0.931069711724\t0.200000000000\n-chr1\t14103000\t14104000\tEya1\t832.0\t-197000\t0.000240384615\t0.999999994943\t0.889688835341\t0.200000000000\n-chr1\t14104000\t14105000\tEya1\t832.0\t-196000\t0.000240384615\t1.000000000000\t0.976487746811\t0.200000000000\n-chr1\t14105000\t14106000\tEya1\t832.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14106000\t14107000\tEya1\t832.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14107000\t14108000\tEya1\t832.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14108000\t14109000\tEya1\t832.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14109000\t14110000\tEya1\t832.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14110000\t14111000\tEya1\t832.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14111000\t14112000\tEya1\t832.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14112000\t14113000\tEya1\t832.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14113000\t14114000\tEya1\t832.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14114000\t14115000\tEya1\t832.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14115000\t14116000\tEya1\t832.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14116000\t14117000\tEya1\t832.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14117000\t14118000\tEya1\t832.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14118000\t14119000\tEya1\t832.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14119000\t14120000\tEya1\t832.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14120000\t14121000\tEya1\t832.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14121000\t14122000\tEya1\t832.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14122000\t14123000\tEya1\t832.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14123000\t14124000\tEya1\t832.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14124000\t14125000\tEya1\t832.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14125000\t14126000\tEya1\t832.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14126000\t14127000\tEya1\t832.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14127000\t14128000\tEya1\t832.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14128000\t14129000\tEya1\t832.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14129000\t14130000\tEya1\t832.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14130000\t14131000\tEya1\t832.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14131000\t14132000\tEya1\t832.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14132000\t14133000\tEya1\t832.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14133000\t14134000\tEya1\t832.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14134000\t14135000\tEya1\t832.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14135000\t14136000\tEya1\t832.0\t-165000\t0.000000000000\t1.000000000000\t0.0"..b'96844\t1.600000000000\n-chr1\t14462000\t14463000\tEya1\t832.0\t162000\t0.002163461538\t0.001996469353\t2.941420233350\t1.800000000000\n-chr1\t14463000\t14464000\tEya1\t832.0\t163000\t0.001682692308\t0.000647190266\t2.325742597467\t1.400000000000\n-chr1\t14464000\t14465000\tEya1\t832.0\t164000\t0.001682692308\t0.000335411875\t2.426424095919\t1.400000000000\n-chr1\t14465000\t14466000\tEya1\t832.0\t165000\t0.000721153846\t0.999918251505\t1.106986108791\t0.600000000000\n-chr1\t14466000\t14467000\tEya1\t832.0\t166000\t0.000240384615\t0.989304103068\t0.400359976274\t0.200000000000\n-chr1\t14467000\t14468000\tEya1\t832.0\t167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14468000\t14469000\tEya1\t832.0\t168000\t0.000000000000\t0.999999999417\t0.000000000000\t0.000000000000\n-chr1\t14469000\t14470000\tEya1\t832.0\t169000\t0.000000000000\t0.997208984795\t0.000000000000\t0.000000000000\n-chr1\t14470000\t14471000\tEya1\t832.0\t170000\t0.000000000000\t0.999780212263\t0.000000000000\t0.000000000000\n-chr1\t14471000\t14472000\tEya1\t832.0\t171000\t0.000480769231\t0.981475867334\t0.659028767461\t0.400000000000\n-chr1\t14472000\t14473000\tEya1\t832.0\t172000\t0.000480769231\t0.944032684304\t0.618316565296\t0.400000000000\n-chr1\t14473000\t14474000\tEya1\t832.0\t173000\t0.000480769231\t0.999936032663\t0.630488151323\t0.400000000000\n-chr1\t14474000\t14475000\tEya1\t832.0\t174000\t0.000480769231\t0.999594131731\t0.667266626197\t0.400000000000\n-chr1\t14475000\t14476000\tEya1\t832.0\t175000\t0.000480769231\t1.000000000000\t0.690275820369\t0.400000000000\n-chr1\t14476000\t14477000\tEya1\t832.0\t176000\t0.000240384615\t1.000000000000\t0.340731894279\t0.200000000000\n-chr1\t14477000\t14478000\tEya1\t832.0\t177000\t0.000480769231\t1.000000000000\t0.727927229038\t0.400000000000\n-chr1\t14478000\t14479000\tEya1\t832.0\t178000\t0.000480769231\t1.000000000000\t0.755396181293\t0.400000000000\n-chr1\t14479000\t14480000\tEya1\t832.0\t179000\t0.000480769231\t1.000000000000\t0.769923031050\t0.400000000000\n-chr1\t14480000\t14481000\tEya1\t832.0\t180000\t0.000480769231\t1.000000000000\t0.812913656138\t0.400000000000\n-chr1\t14481000\t14482000\tEya1\t832.0\t181000\t0.000240384615\t1.000000000000\t0.408530587410\t0.200000000000\n-chr1\t14482000\t14483000\tEya1\t832.0\t182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14483000\t14484000\tEya1\t832.0\t183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14484000\t14485000\tEya1\t832.0\t184000\t0.000240384615\t1.000000000000\t0.390595098725\t0.200000000000\n-chr1\t14485000\t14486000\tEya1\t832.0\t185000\t0.000961538462\t1.000000000000\t1.539846062099\t0.800000000000\n-chr1\t14486000\t14487000\tEya1\t832.0\t186000\t0.000961538462\t1.000000000000\t1.703659471393\t0.800000000000\n-chr1\t14487000\t14488000\tEya1\t832.0\t187000\t0.000961538462\t1.000000000000\t1.731286381939\t0.800000000000\n-chr1\t14488000\t14489000\tEya1\t832.0\t188000\t0.001201923077\t0.000000000000\t2.140962437394\t1.000000000000\n-chr1\t14489000\t14490000\tEya1\t832.0\t189000\t0.001442307692\t0.000000000000\t2.793209135173\t1.200000000000\n-chr1\t14490000\t14491000\tEya1\t832.0\t190000\t0.000721153846\t1.000000000000\t1.404771845823\t0.600000000000\n-chr1\t14491000\t14492000\tEya1\t832.0\t191000\t0.001442307692\t0.000000000000\t2.669066506024\t1.200000000000\n-chr1\t14492000\t14493000\tEya1\t832.0\t192000\t0.002403846154\t0.000000000000\t4.399560174407\t2.000000000000\n-chr1\t14493000\t14494000\tEya1\t832.0\t193000\t0.002163461538\t0.000000000000\t4.289571172663\t1.800000000000\n-chr1\t14494000\t14495000\tEya1\t832.0\t194000\t0.001682692308\t0.000000000000\t3.239907320421\t1.400000000000\n-chr1\t14495000\t14496000\tEya1\t832.0\t195000\t0.002163461538\t0.000000000000\t4.421153111551\t1.800000000000\n-chr1\t14496000\t14497000\tEya1\t832.0\t196000\t0.001682692308\t0.000000000000\t3.438674642317\t1.400000000000\n-chr1\t14497000\t14498000\tEya1\t832.0\t197000\t0.001442307692\t0.000000000000\t2.729727108893\t1.200000000000\n-chr1\t14498000\t14499000\tEya1\t832.0\t198000\t0.002644230769\t0.000000000000\t4.317607586564\t2.200000000000\n-chr1\t14499000\t14500000\tEya1\t832.0\t199000\t0.003305288462\t0.000000000000\t5.764345200343\t2.750000000000\n-chr1\t14500000\t14501000\tEya1\t832.0\t200000\t0.003605769231\t0.000000000000\t6.127958811148\t3.000000000000\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n+# MB-E10-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 832.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t14100000\t14101000\tEya1\t832.0\t-200000\t0.000400641026\t1.000000000000\t2.426424093120\t0.333333333333\n+chr1\t14101000\t14102000\tEya1\t832.0\t-199000\t0.000300480769\t1.000000000000\t1.429857059822\t0.250000000000\n+chr1\t14102000\t14103000\tEya1\t832.0\t-198000\t0.000240384615\t1.000000000000\t0.931069711724\t0.200000000000\n+chr1\t14103000\t14104000\tEya1\t832.0\t-197000\t0.000240384615\t0.999999994943\t0.889688835341\t0.200000000000\n+chr1\t14104000\t14105000\tEya1\t832.0\t-196000\t0.000240384615\t1.000000000000\t0.976487746811\t0.200000000000\n+chr1\t14105000\t14106000\tEya1\t832.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14106000\t14107000\tEya1\t832.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14107000\t14108000\tEya1\t832.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14108000\t14109000\tEya1\t832.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14109000\t14110000\tEya1\t832.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14110000\t14111000\tEya1\t832.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14111000\t14112000\tEya1\t832.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14112000\t14113000\tEya1\t832.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14113000\t14114000\tEya1\t832.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14114000\t14115000\tEya1\t832.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14115000\t14116000\tEya1\t832.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14116000\t14117000\tEya1\t832.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14117000\t14118000\tEya1\t832.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14118000\t14119000\tEya1\t832.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14119000\t14120000\tEya1\t832.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14120000\t14121000\tEya1\t832.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14121000\t14122000\tEya1\t832.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14122000\t14123000\tEya1\t832.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14123000\t14124000\tEya1\t832.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14124000\t14125000\tEya1\t832.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14125000\t14126000\tEya1\t832.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14126000\t14127000\tEya1\t832.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14127000\t14128000\tEya1\t832.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14128000\t14129000\tEya1\t832.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14129000\t14130000\tEya1\t832.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14130000\t14131000\tEya1\t832.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14131000\t14132000\tEya1\t832.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14132000\t14133000\tEya1\t832.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14133000\t14134000\tEya1\t832.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14134000\t14135000\tEya1\t832.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14135000\t14136000\tEya1\t832.0\t-165000\t0.000000000000\t1.000000000000\t0.0"..b'96844\t1.600000000000\n+chr1\t14462000\t14463000\tEya1\t832.0\t162000\t0.002163461538\t0.001996469353\t2.941420233350\t1.800000000000\n+chr1\t14463000\t14464000\tEya1\t832.0\t163000\t0.001682692308\t0.000647190266\t2.325742597467\t1.400000000000\n+chr1\t14464000\t14465000\tEya1\t832.0\t164000\t0.001682692308\t0.000335411875\t2.426424095919\t1.400000000000\n+chr1\t14465000\t14466000\tEya1\t832.0\t165000\t0.000721153846\t0.999918251505\t1.106986108791\t0.600000000000\n+chr1\t14466000\t14467000\tEya1\t832.0\t166000\t0.000240384615\t0.989304103068\t0.400359976274\t0.200000000000\n+chr1\t14467000\t14468000\tEya1\t832.0\t167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14468000\t14469000\tEya1\t832.0\t168000\t0.000000000000\t0.999999999417\t0.000000000000\t0.000000000000\n+chr1\t14469000\t14470000\tEya1\t832.0\t169000\t0.000000000000\t0.997208984795\t0.000000000000\t0.000000000000\n+chr1\t14470000\t14471000\tEya1\t832.0\t170000\t0.000000000000\t0.999780212263\t0.000000000000\t0.000000000000\n+chr1\t14471000\t14472000\tEya1\t832.0\t171000\t0.000480769231\t0.981475867334\t0.659028767461\t0.400000000000\n+chr1\t14472000\t14473000\tEya1\t832.0\t172000\t0.000480769231\t0.944032684304\t0.618316565296\t0.400000000000\n+chr1\t14473000\t14474000\tEya1\t832.0\t173000\t0.000480769231\t0.999936032663\t0.630488151323\t0.400000000000\n+chr1\t14474000\t14475000\tEya1\t832.0\t174000\t0.000480769231\t0.999594131731\t0.667266626197\t0.400000000000\n+chr1\t14475000\t14476000\tEya1\t832.0\t175000\t0.000480769231\t1.000000000000\t0.690275820369\t0.400000000000\n+chr1\t14476000\t14477000\tEya1\t832.0\t176000\t0.000240384615\t1.000000000000\t0.340731894279\t0.200000000000\n+chr1\t14477000\t14478000\tEya1\t832.0\t177000\t0.000480769231\t1.000000000000\t0.727927229038\t0.400000000000\n+chr1\t14478000\t14479000\tEya1\t832.0\t178000\t0.000480769231\t1.000000000000\t0.755396181293\t0.400000000000\n+chr1\t14479000\t14480000\tEya1\t832.0\t179000\t0.000480769231\t1.000000000000\t0.769923031050\t0.400000000000\n+chr1\t14480000\t14481000\tEya1\t832.0\t180000\t0.000480769231\t1.000000000000\t0.812913656138\t0.400000000000\n+chr1\t14481000\t14482000\tEya1\t832.0\t181000\t0.000240384615\t1.000000000000\t0.408530587410\t0.200000000000\n+chr1\t14482000\t14483000\tEya1\t832.0\t182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14483000\t14484000\tEya1\t832.0\t183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14484000\t14485000\tEya1\t832.0\t184000\t0.000240384615\t1.000000000000\t0.390595098725\t0.200000000000\n+chr1\t14485000\t14486000\tEya1\t832.0\t185000\t0.000961538462\t1.000000000000\t1.539846062099\t0.800000000000\n+chr1\t14486000\t14487000\tEya1\t832.0\t186000\t0.000961538462\t1.000000000000\t1.703659471393\t0.800000000000\n+chr1\t14487000\t14488000\tEya1\t832.0\t187000\t0.000961538462\t1.000000000000\t1.731286381939\t0.800000000000\n+chr1\t14488000\t14489000\tEya1\t832.0\t188000\t0.001201923077\t0.000000000000\t2.140962437394\t1.000000000000\n+chr1\t14489000\t14490000\tEya1\t832.0\t189000\t0.001442307692\t0.000000000000\t2.793209135173\t1.200000000000\n+chr1\t14490000\t14491000\tEya1\t832.0\t190000\t0.000721153846\t1.000000000000\t1.404771845823\t0.600000000000\n+chr1\t14491000\t14492000\tEya1\t832.0\t191000\t0.001442307692\t0.000000000000\t2.669066506024\t1.200000000000\n+chr1\t14492000\t14493000\tEya1\t832.0\t192000\t0.002403846154\t0.000000000000\t4.399560174407\t2.000000000000\n+chr1\t14493000\t14494000\tEya1\t832.0\t193000\t0.002163461538\t0.000000000000\t4.289571172663\t1.800000000000\n+chr1\t14494000\t14495000\tEya1\t832.0\t194000\t0.001682692308\t0.000000000000\t3.239907320421\t1.400000000000\n+chr1\t14495000\t14496000\tEya1\t832.0\t195000\t0.002163461538\t0.000000000000\t4.421153111551\t1.800000000000\n+chr1\t14496000\t14497000\tEya1\t832.0\t196000\t0.001682692308\t0.000000000000\t3.438674642317\t1.400000000000\n+chr1\t14497000\t14498000\tEya1\t832.0\t197000\t0.001442307692\t0.000000000000\t2.729727108893\t1.200000000000\n+chr1\t14498000\t14499000\tEya1\t832.0\t198000\t0.002644230769\t0.000000000000\t4.317607586564\t2.200000000000\n+chr1\t14499000\t14500000\tEya1\t832.0\t199000\t0.003305288462\t0.000000000000\t5.764345200343\t2.750000000000\n+chr1\t14500000\t14501000\tEya1\t832.0\t200000\t0.003605769231\t0.000000000000\t6.127958811148\t3.000000000000\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed --- a/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n-# MB-E10-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 800.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t18893000\t18894000\tTfap2d\t800.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18894000\t18895000\tTfap2d\t800.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18895000\t18896000\tTfap2d\t800.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18896000\t18897000\tTfap2d\t800.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n-chr1\t18897000\t18898000\tTfap2d\t800.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18898000\t18899000\tTfap2d\t800.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18899000\t18900000\tTfap2d\t800.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18900000\t18901000\tTfap2d\t800.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18901000\t18902000\tTfap2d\t800.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18902000\t18903000\tTfap2d\t800.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18903000\t18904000\tTfap2d\t800.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18904000\t18905000\tTfap2d\t800.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18905000\t18906000\tTfap2d\t800.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18906000\t18907000\tTfap2d\t800.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18907000\t18908000\tTfap2d\t800.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18908000\t18909000\tTfap2d\t800.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18909000\t18910000\tTfap2d\t800.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18910000\t18911000\tTfap2d\t800.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18911000\t18912000\tTfap2d\t800.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18912000\t18913000\tTfap2d\t800.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18913000\t18914000\tTfap2d\t800.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18914000\t18915000\tTfap2d\t800.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18915000\t18916000\tTfap2d\t800.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18916000\t18917000\tTfap2d\t800.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18917000\t18918000\tTfap2d\t800.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18918000\t18919000\tTfap2d\t800.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18919000\t18920000\tTfap2d\t800.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18920000\t18921000\tTfap2d\t800.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18921000\t18922000\tTfap2d\t800.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18922000\t18923000\tTfap2d\t800.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18923000\t18924000\tTfap2d\t800.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18924000\t18925000\tTfap2d\t800.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18925000\t18926000\tTfap2d\t800.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18926000\t18927000\tTfap2d\t800.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18927000\t18928000\tTfap2d\t800.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr"..b'0\t0.998003530647\t0.000000000000\t0.000000000000\n-chr1\t19256000\t19257000\tTfap2d\t800.0\t163000\t0.000000000000\t0.999352809734\t0.000000000000\t0.000000000000\n-chr1\t19257000\t19258000\tTfap2d\t800.0\t164000\t0.000000000000\t0.999664588125\t0.000000000000\t0.000000000000\n-chr1\t19258000\t19259000\tTfap2d\t800.0\t165000\t0.000250000000\t0.999918251505\t0.383755184381\t0.200000000000\n-chr1\t19259000\t19260000\tTfap2d\t800.0\t166000\t0.000500000000\t0.989304103068\t0.832748750650\t0.400000000000\n-chr1\t19260000\t19261000\tTfap2d\t800.0\t167000\t0.000750000000\t1.000000000000\t1.195333134476\t0.600000000000\n-chr1\t19261000\t19262000\tTfap2d\t800.0\t168000\t0.000750000000\t0.999999999417\t1.161975000232\t0.600000000000\n-chr1\t19262000\t19263000\tTfap2d\t800.0\t169000\t0.001000000000\t0.997208984795\t1.399577730324\t0.800000000000\n-chr1\t19263000\t19264000\tTfap2d\t800.0\t170000\t0.000750000000\t0.999780212263\t1.015547256684\t0.600000000000\n-chr1\t19264000\t19265000\tTfap2d\t800.0\t171000\t0.000750000000\t0.981475867334\t1.028084877240\t0.600000000000\n-chr1\t19265000\t19266000\tTfap2d\t800.0\t172000\t0.000500000000\t0.944032684304\t0.643049227908\t0.400000000000\n-chr1\t19266000\t19267000\tTfap2d\t800.0\t173000\t0.000750000000\t0.999936032663\t0.983561516064\t0.600000000000\n-chr1\t19267000\t19268000\tTfap2d\t800.0\t174000\t0.000500000000\t0.999594131731\t0.693957291245\t0.400000000000\n-chr1\t19268000\t19269000\tTfap2d\t800.0\t175000\t0.000750000000\t1.000000000000\t1.076830279776\t0.600000000000\n-chr1\t19269000\t19270000\tTfap2d\t800.0\t176000\t0.000750000000\t1.000000000000\t1.063083510150\t0.600000000000\n-chr1\t19270000\t19271000\tTfap2d\t800.0\t177000\t0.000750000000\t1.000000000000\t1.135566477299\t0.600000000000\n-chr1\t19271000\t19272000\tTfap2d\t800.0\t178000\t0.000500000000\t1.000000000000\t0.785612028545\t0.400000000000\n-chr1\t19272000\t19273000\tTfap2d\t800.0\t179000\t0.000500000000\t1.000000000000\t0.800719952292\t0.400000000000\n-chr1\t19273000\t19274000\tTfap2d\t800.0\t180000\t0.000250000000\t1.000000000000\t0.422715101192\t0.200000000000\n-chr1\t19274000\t19275000\tTfap2d\t800.0\t181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19275000\t19276000\tTfap2d\t800.0\t182000\t0.000250000000\t1.000000000000\t0.447714381549\t0.200000000000\n-chr1\t19276000\t19277000\tTfap2d\t800.0\t183000\t0.000250000000\t1.000000000000\t0.433723307028\t0.200000000000\n-chr1\t19277000\t19278000\tTfap2d\t800.0\t184000\t0.000750000000\t1.000000000000\t1.218656708021\t0.600000000000\n-chr1\t19278000\t19279000\tTfap2d\t800.0\t185000\t0.000750000000\t1.000000000000\t1.201079928437\t0.600000000000\n-chr1\t19279000\t19280000\tTfap2d\t800.0\t186000\t0.000750000000\t1.000000000000\t1.328854387687\t0.600000000000\n-chr1\t19280000\t19281000\tTfap2d\t800.0\t187000\t0.000500000000\t1.000000000000\t0.900268918608\t0.400000000000\n-chr1\t19281000\t19282000\tTfap2d\t800.0\t188000\t0.000500000000\t1.000000000000\t0.890640373956\t0.400000000000\n-chr1\t19282000\t19283000\tTfap2d\t800.0\t189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19283000\t19284000\tTfap2d\t800.0\t190000\t0.000250000000\t1.000000000000\t0.486987573219\t0.200000000000\n-chr1\t19284000\t19285000\tTfap2d\t800.0\t191000\t0.000250000000\t1.000000000000\t0.462638194377\t0.200000000000\n-chr1\t19285000\t19286000\tTfap2d\t800.0\t192000\t0.000250000000\t1.000000000000\t0.457554258138\t0.200000000000\n-chr1\t19286000\t19287000\tTfap2d\t800.0\t193000\t0.000500000000\t1.000000000000\t0.991367559904\t0.400000000000\n-chr1\t19287000\t19288000\tTfap2d\t800.0\t194000\t0.000500000000\t1.000000000000\t0.962715318068\t0.400000000000\n-chr1\t19288000\t19289000\tTfap2d\t800.0\t195000\t0.000250000000\t1.000000000000\t0.510888804001\t0.200000000000\n-chr1\t19289000\t19290000\tTfap2d\t800.0\t196000\t0.000250000000\t1.000000000000\t0.510888804001\t0.200000000000\n-chr1\t19290000\t19291000\tTfap2d\t800.0\t197000\t0.000250000000\t1.000000000000\t0.473152698875\t0.200000000000\n-chr1\t19291000\t19292000\tTfap2d\t800.0\t198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19292000\t19293000\tTfap2d\t800.0\t199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19293000\t19294000\tTfap2d\t800.0\t200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n+# MB-E10-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 800.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t18893000\t18894000\tTfap2d\t800.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18894000\t18895000\tTfap2d\t800.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18895000\t18896000\tTfap2d\t800.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18896000\t18897000\tTfap2d\t800.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t18897000\t18898000\tTfap2d\t800.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18898000\t18899000\tTfap2d\t800.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18899000\t18900000\tTfap2d\t800.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18900000\t18901000\tTfap2d\t800.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18901000\t18902000\tTfap2d\t800.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18902000\t18903000\tTfap2d\t800.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18903000\t18904000\tTfap2d\t800.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18904000\t18905000\tTfap2d\t800.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18905000\t18906000\tTfap2d\t800.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18906000\t18907000\tTfap2d\t800.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18907000\t18908000\tTfap2d\t800.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18908000\t18909000\tTfap2d\t800.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18909000\t18910000\tTfap2d\t800.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18910000\t18911000\tTfap2d\t800.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18911000\t18912000\tTfap2d\t800.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18912000\t18913000\tTfap2d\t800.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18913000\t18914000\tTfap2d\t800.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18914000\t18915000\tTfap2d\t800.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18915000\t18916000\tTfap2d\t800.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18916000\t18917000\tTfap2d\t800.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18917000\t18918000\tTfap2d\t800.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18918000\t18919000\tTfap2d\t800.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18919000\t18920000\tTfap2d\t800.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18920000\t18921000\tTfap2d\t800.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18921000\t18922000\tTfap2d\t800.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18922000\t18923000\tTfap2d\t800.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18923000\t18924000\tTfap2d\t800.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18924000\t18925000\tTfap2d\t800.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18925000\t18926000\tTfap2d\t800.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18926000\t18927000\tTfap2d\t800.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18927000\t18928000\tTfap2d\t800.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr"..b'0\t0.998003530647\t0.000000000000\t0.000000000000\n+chr1\t19256000\t19257000\tTfap2d\t800.0\t163000\t0.000000000000\t0.999352809734\t0.000000000000\t0.000000000000\n+chr1\t19257000\t19258000\tTfap2d\t800.0\t164000\t0.000000000000\t0.999664588125\t0.000000000000\t0.000000000000\n+chr1\t19258000\t19259000\tTfap2d\t800.0\t165000\t0.000250000000\t0.999918251505\t0.383755184381\t0.200000000000\n+chr1\t19259000\t19260000\tTfap2d\t800.0\t166000\t0.000500000000\t0.989304103068\t0.832748750650\t0.400000000000\n+chr1\t19260000\t19261000\tTfap2d\t800.0\t167000\t0.000750000000\t1.000000000000\t1.195333134476\t0.600000000000\n+chr1\t19261000\t19262000\tTfap2d\t800.0\t168000\t0.000750000000\t0.999999999417\t1.161975000232\t0.600000000000\n+chr1\t19262000\t19263000\tTfap2d\t800.0\t169000\t0.001000000000\t0.997208984795\t1.399577730324\t0.800000000000\n+chr1\t19263000\t19264000\tTfap2d\t800.0\t170000\t0.000750000000\t0.999780212263\t1.015547256684\t0.600000000000\n+chr1\t19264000\t19265000\tTfap2d\t800.0\t171000\t0.000750000000\t0.981475867334\t1.028084877240\t0.600000000000\n+chr1\t19265000\t19266000\tTfap2d\t800.0\t172000\t0.000500000000\t0.944032684304\t0.643049227908\t0.400000000000\n+chr1\t19266000\t19267000\tTfap2d\t800.0\t173000\t0.000750000000\t0.999936032663\t0.983561516064\t0.600000000000\n+chr1\t19267000\t19268000\tTfap2d\t800.0\t174000\t0.000500000000\t0.999594131731\t0.693957291245\t0.400000000000\n+chr1\t19268000\t19269000\tTfap2d\t800.0\t175000\t0.000750000000\t1.000000000000\t1.076830279776\t0.600000000000\n+chr1\t19269000\t19270000\tTfap2d\t800.0\t176000\t0.000750000000\t1.000000000000\t1.063083510150\t0.600000000000\n+chr1\t19270000\t19271000\tTfap2d\t800.0\t177000\t0.000750000000\t1.000000000000\t1.135566477299\t0.600000000000\n+chr1\t19271000\t19272000\tTfap2d\t800.0\t178000\t0.000500000000\t1.000000000000\t0.785612028545\t0.400000000000\n+chr1\t19272000\t19273000\tTfap2d\t800.0\t179000\t0.000500000000\t1.000000000000\t0.800719952292\t0.400000000000\n+chr1\t19273000\t19274000\tTfap2d\t800.0\t180000\t0.000250000000\t1.000000000000\t0.422715101192\t0.200000000000\n+chr1\t19274000\t19275000\tTfap2d\t800.0\t181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19275000\t19276000\tTfap2d\t800.0\t182000\t0.000250000000\t1.000000000000\t0.447714381549\t0.200000000000\n+chr1\t19276000\t19277000\tTfap2d\t800.0\t183000\t0.000250000000\t1.000000000000\t0.433723307028\t0.200000000000\n+chr1\t19277000\t19278000\tTfap2d\t800.0\t184000\t0.000750000000\t1.000000000000\t1.218656708021\t0.600000000000\n+chr1\t19278000\t19279000\tTfap2d\t800.0\t185000\t0.000750000000\t1.000000000000\t1.201079928437\t0.600000000000\n+chr1\t19279000\t19280000\tTfap2d\t800.0\t186000\t0.000750000000\t1.000000000000\t1.328854387687\t0.600000000000\n+chr1\t19280000\t19281000\tTfap2d\t800.0\t187000\t0.000500000000\t1.000000000000\t0.900268918608\t0.400000000000\n+chr1\t19281000\t19282000\tTfap2d\t800.0\t188000\t0.000500000000\t1.000000000000\t0.890640373956\t0.400000000000\n+chr1\t19282000\t19283000\tTfap2d\t800.0\t189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19283000\t19284000\tTfap2d\t800.0\t190000\t0.000250000000\t1.000000000000\t0.486987573219\t0.200000000000\n+chr1\t19284000\t19285000\tTfap2d\t800.0\t191000\t0.000250000000\t1.000000000000\t0.462638194377\t0.200000000000\n+chr1\t19285000\t19286000\tTfap2d\t800.0\t192000\t0.000250000000\t1.000000000000\t0.457554258138\t0.200000000000\n+chr1\t19286000\t19287000\tTfap2d\t800.0\t193000\t0.000500000000\t1.000000000000\t0.991367559904\t0.400000000000\n+chr1\t19287000\t19288000\tTfap2d\t800.0\t194000\t0.000500000000\t1.000000000000\t0.962715318068\t0.400000000000\n+chr1\t19288000\t19289000\tTfap2d\t800.0\t195000\t0.000250000000\t1.000000000000\t0.510888804001\t0.200000000000\n+chr1\t19289000\t19290000\tTfap2d\t800.0\t196000\t0.000250000000\t1.000000000000\t0.510888804001\t0.200000000000\n+chr1\t19290000\t19291000\tTfap2d\t800.0\t197000\t0.000250000000\t1.000000000000\t0.473152698875\t0.200000000000\n+chr1\t19291000\t19292000\tTfap2d\t800.0\t198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19292000\t19293000\tTfap2d\t800.0\t199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19293000\t19294000\tTfap2d\t800.0\t200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed --- a/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed Thu Feb 06 00:25:04 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b"@@ -1,405 +0,0 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n-# MB-E10-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 978.0\n-# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n-#\n-chr1\t4287000\t4288000\tSox17\t978.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4288000\t4289000\tSox17\t978.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4289000\t4290000\tSox17\t978.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4290000\t4291000\tSox17\t978.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n-chr1\t4291000\t4292000\tSox17\t978.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4292000\t4293000\tSox17\t978.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4293000\t4294000\tSox17\t978.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4294000\t4295000\tSox17\t978.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4295000\t4296000\tSox17\t978.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4296000\t4297000\tSox17\t978.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4297000\t4298000\tSox17\t978.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4298000\t4299000\tSox17\t978.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4299000\t4300000\tSox17\t978.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4300000\t4301000\tSox17\t978.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4301000\t4302000\tSox17\t978.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4302000\t4303000\tSox17\t978.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4303000\t4304000\tSox17\t978.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4304000\t4305000\tSox17\t978.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4305000\t4306000\tSox17\t978.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4306000\t4307000\tSox17\t978.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4307000\t4308000\tSox17\t978.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4308000\t4309000\tSox17\t978.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4309000\t4310000\tSox17\t978.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4310000\t4311000\tSox17\t978.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4311000\t4312000\tSox17\t978.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4312000\t4313000\tSox17\t978.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4313000\t4314000\tSox17\t978.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4314000\t4315000\tSox17\t978.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4315000\t4316000\tSox17\t978.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4316000\t4317000\tSox17\t978.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4317000\t4318000\tSox17\t978.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4318000\t4319000\tSox17\t978.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4319000\t4320000\tSox17\t978.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4320000\t4321000\tSox17\t978.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4321000\t4322000\tSox17\t978.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4322000\t4323000\tSox17\t978.0\t-165000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t432300"..b'0.000613496933\t1.000000000000\t0.737745564637\t0.600000000000\n-chr1\t4649000\t4650000\tSox17\t978.0\t162000\t0.000408997955\t0.998003530647\t0.556069446523\t0.400000000000\n-chr1\t4650000\t4651000\tSox17\t978.0\t163000\t0.000204498978\t0.999352809734\t0.282649407113\t0.200000000000\n-chr1\t4651000\t4652000\tSox17\t978.0\t164000\t0.000204498978\t0.999664588125\t0.294885312271\t0.200000000000\n-chr1\t4652000\t4653000\tSox17\t978.0\t165000\t0.000204498978\t0.999918251505\t0.313910171273\t0.200000000000\n-chr1\t4653000\t4654000\tSox17\t978.0\t166000\t0.000817995910\t0.989304103068\t1.362370144213\t0.800000000000\n-chr1\t4654000\t4655000\tSox17\t978.0\t167000\t0.000817995910\t1.000000000000\t1.303703486817\t0.800000000000\n-chr1\t4655000\t4656000\tSox17\t978.0\t168000\t0.000817995910\t0.999999999417\t1.267321063648\t0.800000000000\n-chr1\t4656000\t4657000\tSox17\t978.0\t169000\t0.001226993865\t0.002791015205\t1.717273288741\t1.200000000000\n-chr1\t4657000\t4658000\tSox17\t978.0\t170000\t0.001226993865\t0.000219787737\t1.661427004800\t1.200000000000\n-chr1\t4658000\t4659000\tSox17\t978.0\t171000\t0.000613496933\t0.981475867334\t0.840969224736\t0.600000000000\n-chr1\t4659000\t4660000\tSox17\t978.0\t172000\t0.000613496933\t0.944032684304\t0.789017457556\t0.600000000000\n-chr1\t4660000\t4661000\tSox17\t978.0\t173000\t0.000613496933\t0.999936032663\t0.804549297394\t0.600000000000\n-chr1\t4661000\t4662000\tSox17\t978.0\t174000\t0.000204498978\t0.999594131731\t0.283827112984\t0.200000000000\n-chr1\t4662000\t4663000\tSox17\t978.0\t175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4663000\t4664000\tSox17\t978.0\t176000\t0.000408997955\t1.000000000000\t0.579731975542\t0.400000000000\n-chr1\t4664000\t4665000\tSox17\t978.0\t177000\t0.001022494888\t0.000000000000\t1.548147889979\t1.000000000000\n-chr1\t4665000\t4666000\tSox17\t978.0\t178000\t0.001022494888\t0.000000000000\t1.606568565531\t1.000000000000\n-chr1\t4666000\t4667000\tSox17\t978.0\t179000\t0.001226993865\t0.000000000000\t1.964956938139\t1.200000000000\n-chr1\t4667000\t4668000\tSox17\t978.0\t180000\t0.001226993865\t0.000000000000\t2.074675343272\t1.200000000000\n-chr1\t4668000\t4669000\tSox17\t978.0\t181000\t0.001022494888\t0.000000000000\t1.737717018021\t1.000000000000\n-chr1\t4669000\t4670000\tSox17\t978.0\t182000\t0.000408997955\t1.000000000000\t0.732457065928\t0.400000000000\n-chr1\t4670000\t4671000\tSox17\t978.0\t183000\t0.000613496933\t1.000000000000\t1.064351673689\t0.600000000000\n-chr1\t4671000\t4672000\tSox17\t978.0\t184000\t0.000817995910\t1.000000000000\t1.329141603840\t0.800000000000\n-chr1\t4672000\t4673000\tSox17\t978.0\t185000\t0.000817995910\t1.000000000000\t1.309971292093\t0.800000000000\n-chr1\t4673000\t4674000\tSox17\t978.0\t186000\t0.000817995910\t1.000000000000\t1.449329938854\t0.800000000000\n-chr1\t4674000\t4675000\tSox17\t978.0\t187000\t0.001226993865\t0.000000000000\t2.209248880021\t1.200000000000\n-chr1\t4675000\t4676000\tSox17\t978.0\t188000\t0.001022494888\t0.000000000000\t1.821350457987\t1.000000000000\n-chr1\t4676000\t4677000\tSox17\t978.0\t189000\t0.000817995910\t1.000000000000\t1.584151329559\t0.800000000000\n-chr1\t4677000\t4678000\tSox17\t978.0\t190000\t0.001022494888\t0.000000000000\t1.991769215618\t1.000000000000\n-chr1\t4678000\t4679000\tSox17\t978.0\t191000\t0.001226993865\t0.000000000000\t2.270616904920\t1.200000000000\n-chr1\t4679000\t4680000\tSox17\t978.0\t192000\t0.000817995910\t1.000000000000\t1.497110047078\t0.800000000000\n-chr1\t4680000\t4681000\tSox17\t978.0\t193000\t0.001022494888\t0.000000000000\t2.027336523322\t1.000000000000\n-chr1\t4681000\t4682000\tSox17\t978.0\t194000\t0.000817995910\t1.000000000000\t1.574994385387\t0.800000000000\n-chr1\t4682000\t4683000\tSox17\t978.0\t195000\t0.000613496933\t1.000000000000\t1.253714856445\t0.600000000000\n-chr1\t4683000\t4684000\tSox17\t978.0\t196000\t0.000204498978\t1.000000000000\t0.417904952148\t0.200000000000\n-chr1\t4684000\t4685000\tSox17\t978.0\t197000\t0.001022494888\t0.000000000000\t1.935184862473\t1.000000000000\n-chr1\t4685000\t4686000\tSox17\t978.0\t198000\t0.000817995910\t1.000000000000\t1.335657003912\t0.800000000000\n-chr1\t4686000\t4687000\tSox17\t978.0\t199000\t0.001022494888\t0.000000000000\t1.783206992633\t1.000000000000\n-chr1\t4687000\t4688000\tSox17\t978.0\t200000\t0.001363326517\t0.000000000000\t2.316956024029\t1.333333333333\n' |
| b |
| diff -r 3ece579827f4 -r aefb1d4c85ab test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt Tue Mar 10 19:02:31 2020 +0000 |
| b |
| b"@@ -0,0 +1,405 @@\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n+# MB-E10-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 978.0\n+# Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n+#\n+chr1\t4287000\t4288000\tSox17\t978.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4288000\t4289000\tSox17\t978.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4289000\t4290000\tSox17\t978.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4290000\t4291000\tSox17\t978.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t4291000\t4292000\tSox17\t978.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4292000\t4293000\tSox17\t978.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4293000\t4294000\tSox17\t978.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4294000\t4295000\tSox17\t978.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4295000\t4296000\tSox17\t978.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4296000\t4297000\tSox17\t978.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4297000\t4298000\tSox17\t978.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4298000\t4299000\tSox17\t978.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4299000\t4300000\tSox17\t978.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4300000\t4301000\tSox17\t978.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4301000\t4302000\tSox17\t978.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4302000\t4303000\tSox17\t978.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4303000\t4304000\tSox17\t978.0\t-184000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4304000\t4305000\tSox17\t978.0\t-183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4305000\t4306000\tSox17\t978.0\t-182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4306000\t4307000\tSox17\t978.0\t-181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4307000\t4308000\tSox17\t978.0\t-180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4308000\t4309000\tSox17\t978.0\t-179000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4309000\t4310000\tSox17\t978.0\t-178000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4310000\t4311000\tSox17\t978.0\t-177000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4311000\t4312000\tSox17\t978.0\t-176000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4312000\t4313000\tSox17\t978.0\t-175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4313000\t4314000\tSox17\t978.0\t-174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4314000\t4315000\tSox17\t978.0\t-173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4315000\t4316000\tSox17\t978.0\t-172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4316000\t4317000\tSox17\t978.0\t-171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4317000\t4318000\tSox17\t978.0\t-170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4318000\t4319000\tSox17\t978.0\t-169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4319000\t4320000\tSox17\t978.0\t-168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4320000\t4321000\tSox17\t978.0\t-167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4321000\t4322000\tSox17\t978.0\t-166000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4322000\t4323000\tSox17\t978.0\t-165000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t432300"..b'0.000613496933\t1.000000000000\t0.737745564637\t0.600000000000\n+chr1\t4649000\t4650000\tSox17\t978.0\t162000\t0.000408997955\t0.998003530647\t0.556069446523\t0.400000000000\n+chr1\t4650000\t4651000\tSox17\t978.0\t163000\t0.000204498978\t0.999352809734\t0.282649407113\t0.200000000000\n+chr1\t4651000\t4652000\tSox17\t978.0\t164000\t0.000204498978\t0.999664588125\t0.294885312271\t0.200000000000\n+chr1\t4652000\t4653000\tSox17\t978.0\t165000\t0.000204498978\t0.999918251505\t0.313910171273\t0.200000000000\n+chr1\t4653000\t4654000\tSox17\t978.0\t166000\t0.000817995910\t0.989304103068\t1.362370144213\t0.800000000000\n+chr1\t4654000\t4655000\tSox17\t978.0\t167000\t0.000817995910\t1.000000000000\t1.303703486817\t0.800000000000\n+chr1\t4655000\t4656000\tSox17\t978.0\t168000\t0.000817995910\t0.999999999417\t1.267321063648\t0.800000000000\n+chr1\t4656000\t4657000\tSox17\t978.0\t169000\t0.001226993865\t0.002791015205\t1.717273288741\t1.200000000000\n+chr1\t4657000\t4658000\tSox17\t978.0\t170000\t0.001226993865\t0.000219787737\t1.661427004800\t1.200000000000\n+chr1\t4658000\t4659000\tSox17\t978.0\t171000\t0.000613496933\t0.981475867334\t0.840969224736\t0.600000000000\n+chr1\t4659000\t4660000\tSox17\t978.0\t172000\t0.000613496933\t0.944032684304\t0.789017457556\t0.600000000000\n+chr1\t4660000\t4661000\tSox17\t978.0\t173000\t0.000613496933\t0.999936032663\t0.804549297394\t0.600000000000\n+chr1\t4661000\t4662000\tSox17\t978.0\t174000\t0.000204498978\t0.999594131731\t0.283827112984\t0.200000000000\n+chr1\t4662000\t4663000\tSox17\t978.0\t175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4663000\t4664000\tSox17\t978.0\t176000\t0.000408997955\t1.000000000000\t0.579731975542\t0.400000000000\n+chr1\t4664000\t4665000\tSox17\t978.0\t177000\t0.001022494888\t0.000000000000\t1.548147889979\t1.000000000000\n+chr1\t4665000\t4666000\tSox17\t978.0\t178000\t0.001022494888\t0.000000000000\t1.606568565531\t1.000000000000\n+chr1\t4666000\t4667000\tSox17\t978.0\t179000\t0.001226993865\t0.000000000000\t1.964956938139\t1.200000000000\n+chr1\t4667000\t4668000\tSox17\t978.0\t180000\t0.001226993865\t0.000000000000\t2.074675343272\t1.200000000000\n+chr1\t4668000\t4669000\tSox17\t978.0\t181000\t0.001022494888\t0.000000000000\t1.737717018021\t1.000000000000\n+chr1\t4669000\t4670000\tSox17\t978.0\t182000\t0.000408997955\t1.000000000000\t0.732457065928\t0.400000000000\n+chr1\t4670000\t4671000\tSox17\t978.0\t183000\t0.000613496933\t1.000000000000\t1.064351673689\t0.600000000000\n+chr1\t4671000\t4672000\tSox17\t978.0\t184000\t0.000817995910\t1.000000000000\t1.329141603840\t0.800000000000\n+chr1\t4672000\t4673000\tSox17\t978.0\t185000\t0.000817995910\t1.000000000000\t1.309971292093\t0.800000000000\n+chr1\t4673000\t4674000\tSox17\t978.0\t186000\t0.000817995910\t1.000000000000\t1.449329938854\t0.800000000000\n+chr1\t4674000\t4675000\tSox17\t978.0\t187000\t0.001226993865\t0.000000000000\t2.209248880021\t1.200000000000\n+chr1\t4675000\t4676000\tSox17\t978.0\t188000\t0.001022494888\t0.000000000000\t1.821350457987\t1.000000000000\n+chr1\t4676000\t4677000\tSox17\t978.0\t189000\t0.000817995910\t1.000000000000\t1.584151329559\t0.800000000000\n+chr1\t4677000\t4678000\tSox17\t978.0\t190000\t0.001022494888\t0.000000000000\t1.991769215618\t1.000000000000\n+chr1\t4678000\t4679000\tSox17\t978.0\t191000\t0.001226993865\t0.000000000000\t2.270616904920\t1.200000000000\n+chr1\t4679000\t4680000\tSox17\t978.0\t192000\t0.000817995910\t1.000000000000\t1.497110047078\t0.800000000000\n+chr1\t4680000\t4681000\tSox17\t978.0\t193000\t0.001022494888\t0.000000000000\t2.027336523322\t1.000000000000\n+chr1\t4681000\t4682000\tSox17\t978.0\t194000\t0.000817995910\t1.000000000000\t1.574994385387\t0.800000000000\n+chr1\t4682000\t4683000\tSox17\t978.0\t195000\t0.000613496933\t1.000000000000\t1.253714856445\t0.600000000000\n+chr1\t4683000\t4684000\tSox17\t978.0\t196000\t0.000204498978\t1.000000000000\t0.417904952148\t0.200000000000\n+chr1\t4684000\t4685000\tSox17\t978.0\t197000\t0.001022494888\t0.000000000000\t1.935184862473\t1.000000000000\n+chr1\t4685000\t4686000\tSox17\t978.0\t198000\t0.000817995910\t1.000000000000\t1.335657003912\t0.800000000000\n+chr1\t4686000\t4687000\tSox17\t978.0\t199000\t0.001022494888\t0.000000000000\t1.783206992633\t1.000000000000\n+chr1\t4687000\t4688000\tSox17\t978.0\t200000\t0.001363326517\t0.000000000000\t2.316956024029\t1.333333333333\n' |
