| Previous changeset 20:72aa8e0ad523 (2018-06-18) |
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Commit message:
Uploaded |
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modified:
gene_family_scaffold_updater.pl |
| b |
| diff -r 72aa8e0ad523 -r 80822647087b gene_family_scaffold_updater.pl --- a/gene_family_scaffold_updater.pl Mon Jun 18 10:27:51 2018 -0400 +++ b/gene_family_scaffold_updater.pl Tue Jul 31 08:11:32 2018 -0400 |
| b |
| @@ -668,7 +668,7 @@ # update orthogroup blast and hmm databases log_msg("Updating blast and hmm databases."); - my $update_blast_database = system "cat $method_dir/orthogroups_fasta/*.faa >> $working_dir/$scaffold/db/blast/$method"; + my $update_blast_database = system "find $method_dir/orthogroups_fasta/ -name \"*.faa\" -print0 | xargs -0 cat >> $working_dir/$scaffold/db/blast/$method"; if ($update_blast_database != 0) { stop_err("Updating blast database failed."); } @@ -676,7 +676,7 @@ if ($index_blast_database != 0) { stop_err("Indexing blast database failed."); } - my $update_hmm_database = system "cat $working_dir/$scaffold/hmms/$method/*.hmm > $working_dir/$scaffold/db/hmm/$method"; + my $update_hmm_database = system "find $working_dir/$scaffold/hmms/$method/ -name \"*.hmm\" -print0 | xargs -0 cat > $working_dir/$scaffold/db/hmm/$method"; if ($update_hmm_database != 0) { stop_err("Updating hmm database failed."); } |