| Previous changeset 7:836c7a8e563f (2019-05-02) |
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Commit message:
Uploaded |
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modified:
mafft.xml |
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| diff -r 836c7a8e563f -r 6e4e5e8f06fe mafft.xml --- a/mafft.xml Thu May 02 07:57:29 2019 -0400 +++ b/mafft.xml Thu May 02 08:04:09 2019 -0400 |
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| @@ -14,25 +14,15 @@ </version_command> <command> <![CDATA[ - mafft --thread \${GALAXY_SLOTS:-1} --add $seqtoadd --reorder $existingalignment $outputFormat > $outputAlignment; + mafft --thread \${GALAXY_SLOTS:-1} --add $seqtoadd --reorder $existingalignment > $outputAlignment; ]]> </command> <inputs> <param name="seqtoadd" type="data" format="fasta" label="Sequences to add" help="Sequences to add in FASTA format."/> <param name="existingalignment" type="data" format="fasta" label="Alignment already done" help="Multi-alignment in FASTA format."/> - <param name="outputFormat" type="select" label="Output format" help="Either FASTA or ClustalW or Phylip"> - <option value="" selected="true">FASTA</option> - <option value="--clustalout">ClustalW</option> - <option value="--phylipout">Phylip</option> - </param> </inputs> <outputs> - <data format="fasta" name="outputAlignment" label="${tool.name} on ${on_string}"> - <change_format> - <when input="outputFormat" value="--clustalout" format="clustal"/> - <when input="outputFormat" value="--phylipout" format="phylip"/> - </change_format> - </data> + <data format="fasta" name="outputAlignment" label="${tool.name} on ${on_string}"/> </outputs> <help> <![CDATA[ |