| Previous changeset 19:381e18f13ed2 (2020-07-30) Next changeset 21:cf6e906ab947 (2020-08-17) |
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Commit message:
"planemo upload commit b218f949aa7a17b1e75a35946a3a19194bf168f3-dirty" |
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modified:
add_protein_features.xml |
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| diff -r 381e18f13ed2 -r 3c5813b29486 add_protein_features.xml --- a/add_protein_features.xml Thu Jul 30 09:45:47 2020 +0000 +++ b/add_protein_features.xml Fri Jul 31 08:18:39 2020 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="prot_features" name="Add protein features" version="2020.07.30.1"> +<tool id="prot_features" name="Add protein features" version="2020.07.31"> <description>[neXtProt, Human] </description> <requirements> @@ -66,19 +66,19 @@ <option value="Uniprot_AC" selected="false">UniProt accession number</option> </param> <param name="pc_features" type="select" label="Features/Annotation" multiple="true" help="" display="checkboxes" optional="false"> - <option value="SeqLength" selected="false">Sequence Length</option> + <option value="ProteinName" selected="false">Protein name</option> + <option value="SeqLength" selected="false">Sequence Length</option> <option value="MW" selected="false">Molecular Weight</option> <option value="IsoPoint" selected="false">Isoelectric point</option> <option value="TMDomains" selected="false">Number of transmembrane domains</option> - <option value="ProteinExistence" selected="false">Protein Existence (evidence score from 1 to 5)</option> - <option value="Chr" selected="false">Chromosome</option> - <option value="SubcellLocations" selected="false">Subcellular Location</option> + <option value="SubcellLocations" selected="false">Subcellular Location</option> <option value="Diseases" selected="false">Disease information</option> - <option value="ProteinName" selected="false">Protein name</option> <option value="Function" selected="false">Protein function</option> <option value="PostTranslationalModifications" selected="false">Post translational modifications</option> <option value="ProteinFamily" selected="false">Protein family</option> <option value="Pathway" selected="false">Pathway(s)</option> + <option value="ProteinExistence" selected="false">Protein Existence (evidence score from 1 to 5)</option> + <option value="Chr" selected="false">Chromosome</option> </param> <param name="ref_file" type="select" label="Release of neXtProt reference file to use"> @@ -118,7 +118,7 @@ **Description** -This tool retrieves annotation (protein features) from the neXtProt database (knowledgebase on human proteins) to enrich your protein IDs list. +This tool retrieves annotation (protein features) from the neXtProt database (knowledgebase on human proteins) to enrich and better inform your protein IDs list. ----- @@ -140,7 +140,7 @@ **Output** -Output is a tabular file containing both original columns and new columns including the annotation requested. +Output is a tabular file containing both original columns and new columns including the annotation requested. Only features/annotations assigned with a "GOLD" quality criterion are considered, otherwise a "NA" value is returned. .. class:: warningmark @@ -154,8 +154,9 @@ neXtProt releases : -- nextProt release 07-05-2019 (release Feb 13, 2019) -- neXtProt release 08-10-2018 (release Feb 21, 2018) +- nextProt release 31-07-2020 (release Feb, 2020) +- nextProt release 07-05-2019 (release Feb, 2019) +- neXtProt release 08-10-2018 (release Feb, 2018) .. class:: warningmark @@ -167,7 +168,7 @@ **Authors** -David Christiany, Lisa Peru, T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR +David Christiany, Lisa Perus, T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform, FR |