Changeset 12:2ee713716272 (2019-05-10)

Previous changeset 11:5653f6e46f73 (2019-05-10) Next changeset 13:abfc593779dc (2019-05-10)

Commit message:
planemo upload commit 4a4f3b5c399aecc837ebeca32c74bc3999784dce-dirty

modified:
add_protein_features.xml
proteore_nextprot_ref.loc.sample

added:
tool-data/nextprot_ref_07-05-2019.tsv

diff -r 5653f6e46f73 -r 2ee713716272 add_protein_features.xml
--- a/add_protein_features.xml Fri May 10 06:02:39 2019 -0400
+++ b/add_protein_features.xml Fri May 10 08:19:24 2019 -0400

[

@@ -1,4 +1,4 @@
-<tool id="prot_features" name="Add protein features" version="2019.05.10.3">
+<tool id="prot_features" name="Add protein features" version="2019.05.10.4">
<description>[neXtProt]
</description>
<requirements>

diff -r 5653f6e46f73 -r 2ee713716272 proteore_nextprot_ref.loc.sample
--- a/proteore_nextprot_ref.loc.sample Fri May 10 06:02:39 2019 -0400
+++ b/proteore_nextprot_ref.loc.sample Fri May 10 08:19:24 2019 -0400

@@ -1,3 +1,4 @@
#<id> <release> <name> <value>
9979818992 nextprot_ref_08-10-2018 neXtProt release 08-10-2018 tool-data/nextprot_ref_08-10-2018.tsv
9979809691 nextprot_ref_09-03-2019 neXtProt release 09-03-2019 tool-data/nextprot_ref_09-03-2019.tsv
+9979809493 nextprot_ref_07-05-2019 neXtProt release 07-05-2019 tool-data/nextprot_ref_07-05-2019.tsv

diff -r 5653f6e46f73 -r 2ee713716272 tool-data/nextprot_ref_07-05-2019.tsv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/nextprot_ref_07-05-2019.tsv Fri May 10 08:19:24 2019 -0400

b'@@ -0,0 +1,20400 @@\n+NextprotID\tMW\tSeqLength\tIsoPoint\tChr\tSubcellLocations\tDiseases\tTMDomains\tProteinExistence\r\n+NX_A0A024RBG1\t20434\t181\t5.99\t1\tCytoplasm\tNA\t0\tPE1\r\n+NX_A0A075B6H9\t12773\t119\t6.01\t22\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A075B6I0\t12814\t122\t4.33\t22\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A075B6I1\t12987\t120\t5.8\t22\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A075B6I4\t12395\t117\t7.85\t22\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A075B6I9\t12468\t117\t6.69\t22\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A075B6J1\t13277\t123\t4.75\t22\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A075B6J6\t12549\t115\t3.95\t22\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A075B6J9\t12412\t118\t4.66\t22\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A075B6K0\t12466\t115\t4.58\t22\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A075B6K2\t12387\t115\t5.34\t22\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A075B6K4\t12441\t115\t4.72\t22\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A075B6K5\t12332\t115\t6.81\t22\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A075B6K6\t13330\t122\t5.39\t22\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A075B6N1\t12769\t114\t6.53\t7\tCell membrane\tNA\t0\tPE1\r\n+NX_A0A075B6N2\t12175\t111\t8.52\t7\tCell membrane\tNA\t0\tPE1\r\n+NX_A0A075B6N3\t12929\t115\t7.68\t7\tCell membrane\tNA\t0\tPE3\r\n+NX_A0A075B6N4\t12983\t114\t5.91\t7\tCell membrane\tNA\t0\tPE3\r\n+NX_A0A075B6P5\t12957\t120\t5.61\t2\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A075B6Q5\t12891\t118\t7.69\t14\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A075B6R2\t12848\t117\t9.64\t14\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A075B6S2\t13143\t120\t6.53\t2\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A075B6S4\t12835\t117\t9.22\t2\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A075B6S5\t12712\t117\t8.5\t2\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A075B6S6\t13215\t120\t7.79\t2\tCell membrane;Secreted\tNA\t0\tPE3\r\n+NX_A0A075B6T6\t12838\t113\t6.17\t14\tCell membrane\tNA\t0\tPE1\r\n+NX_A0A075B6T7\t15362\t132\t9.2\t14\tCell membrane\tNA\t0\tPE3\r\n+NX_A0A075B6T8\t12354\t112\t4.83\t14\tCell membrane\tNA\t0\tPE3\r\n+NX_A0A075B6U4\t12598\t112\t8.39\t14\tCell membrane\tNA\t0\tPE3\r\n+NX_A0A075B6V5\t12697\t113\t6.57\t14\tCell membrane\tNA\t0\tPE3\r\n+NX_A0A075B6W5\t13545\t121\t8.45\t14\tCell membrane\tNA\t0\tPE3\r\n+NX_A0A075B6X5\t12414\t111\t5.26\t14\tCell membrane\tNA\t0\tPE3\r\n+NX_A0A075B6Y3\t2097\t20\t11\t14\tCell membrane\tNA\t0\tPE4\r\n+NX_A0A075B706\t1761\t16\t8.26\t14\tCell membrane\tNA\t0\tPE1\r\n+NX_A0A075B759\t18197\t164\t9.43\t1\tCytoplasm\tNA\t0\tPE3\r\n+NX_A0A075B767\t18208\t164\t9.19\t1\tCytoplasm\tNA\t0\tPE3\r\n+NX_A0A087WSX0\t13162\t123\t6.69\t22\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A087WSY4\t13025\t118\t9.7\t3\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A087WSY6\t12534\t115\t5.14\t2\tCell membrane;Secreted\tNA\t0\tPE3\r\n+NX_A0A087WSZ0\t12837\t117\t7.62\t2\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A087WSZ9\t12582\t112\t8.58\t14\tCell membrane\tNA\t0\tPE3\r\n+NX_A0A087WT01\t12043\t109\t5.7\t14\tCell membrane\tNA\t0\tPE1\r\n+NX_A0A087WT02\t12289\t112\t5.26\t14\tCell membrane\tNA\t0\tPE3\r\n+NX_A0A087WT03\t12306\t109\t7.76\t14\tCell membrane\tNA\t0\tPE1\r\n+NX_A0A087WTH1\t11832\t108\t7.61\t16\tMembrane\tNA\t2\tPE2\r\n+NX_A0A087WTH5\t15028\t132\t8.73\t21\tMembrane\tNA\t1\tPE3\r\n+NX_A0A087WUL8\t440408\t3843\t4.53\t1\tCytoplasm\tNA\t0\tPE5\r\n+NX_A0A087WV62\t12845\t115\t6.7\t7\tCell membrane\tNA\t0\tPE3\r\n+NX_A0A087WVF3\t62187\t549\t9.2\t17\tCell membrane\tNA\t0\tPE2\r\n+NX_A0A087WW87\t13310\t121\t4.43\t2\tCell membrane;Secreted\tNA\t0\tPE1\r\n+NX_A0A087WX78\t41674\t387\t8.87\t18\tNucleus\tNA\t0\tPE5\r\n+NX_A0A087WXM9\t40829\t373\t8.65\t5\tKinetochore;Centromere\tNA\t0\tPE1\r\n+NX_A0A087WXS9\t62205\t549\t9.2\t17\tCell membrane\tNA\t0\tPE3\r\n+NX_A0A087X0M5\t13028\t115\t9.14\t7\tCell membrane\tNA\t0\tPE3\r\n+NX_A0A087X179\t62131\t549\t9.18\t17\tCell membrane\tNA\t0\tPE2\r\n+NX_A0A087X1C5\t57489\t515\t8.7\t22\tMitochondrion;Cytoplasm;Membrane\tNA\t2\tPE5\r\n+NX_A0A087X1G2\t62171\t549\t9.23\t17\tCell membrane\tNA\t0\tPE3\r\n+NX_A0A096LNP1\t8156\t70\t8.26\t11\tSecreted\tNA\t0\tPE2\r\n+NX_A0A096LP01\t10908\t95\t6.24\t20\tNucleoplasm;Cytosol;Membrane\tNA\t1\tPE1\r\n+NX_A0A096LP49\t114856\t1063\t9.76\t9\tNA\tNA\t0\tPE1\r\n+NX_A0A096LP55\t10752\t91\t4.39\t1\tMitochondrion inner membrane\tNA\t0\tPE3\r\n+NX_A0A096LPI5\t11989\t108\t8.8\t6\tNA\tNA\t0\tPE4\r\n+NX_A0A0A0MRZ7\t13297\t120\t4.9\t2\tCell membrane;Secreted\tNA\t0\tPE3\r\n+NX_A0A0A0MRZ8\t12625\t115\t5.15\t2\tCell membrane;Secreted\tNA\t0\tPE3\r\n+NX_A0A0A0MRZ9\t13446\t124\t7.76\t22\tCell m'..b'227\t1575\t6.14\t9\tBasement membrane\tCortical malformations occipital\t0\tPE1\r\n+NX_Q9Y6N7\t180930\t1651\t5.7\t3\tAxon;Endoplasmic reticulum-Golgi intermediate compartment membrane;Cell membrane\tNA\t1\tPE1\r\n+NX_Q9Y6N8\t88451\t788\t4.83\t5\tCell membrane\tNA\t1\tPE1\r\n+NX_Q9Y6N9\t62211\t552\t5.36\t11\tCytosol;Microvillus;Cytoskeleton\tDeafness, autosomal recessive, 18A;Usher syndrome 1C\t0\tPE1\r\n+NX_Q9Y6P5\t56557\t492\t5.68\t6\tCytoplasm;Nucleolus;Nucleus\tNA\t0\tPE1\r\n+NX_Q9Y6Q1\t74576\t641\t6.62\tX\tCytosol;Perinuclear region;Spindle\tNA\t0\tPE1\r\n+NX_Q9Y6Q2\t83141\t735\t5.82\t2\tCytoplasm;Membrane\tNA\t0\tPE1\r\n+NX_Q9Y6Q3\t71209\t630\t9.26\t9\tCytoplasmic vesicle;Nucleus\tNA\t0\tPE1\r\n+NX_Q9Y6Q5\t48108\t423\t8.23\t19\tCytoplasmic vesicle;Clathrin-coated vesicle membrane;Golgi apparatus\tNA\t0\tPE1\r\n+NX_Q9Y6Q6\t66034\t616\t5.21\t18\tCytosol;Cell membrane\tPaget disease of bone 2, early-onset;Osteopetrosis, autosomal recessive 7;Familial expansile osteolysis\t1\tPE1\r\n+NX_Q9Y6Q9\t155293\t1424\t7.16\t20\tCytosol;Nucleoplasm;Nucleus;Cytoplasm\tNA\t0\tPE1\r\n+NX_Q9Y6R0\t64891\t609\t9.1\t19\tCytoplasm\tNA\t0\tPE1\r\n+NX_Q9Y6R1\t121461\t1079\t6.35\t4\tBasolateral cell membrane\tRenal tubular acidosis, proximal, with ocular abnormalities and mental retardation\t12\tPE1\r\n+NX_Q9Y6R4\t181685\t1608\t5.94\t6\tCytosol;Perinuclear region\tNA\t0\tPE1\r\n+NX_Q9Y6R6\t96807\t833\t9.17\t19\tNucleus\tNA\t0\tPE1\r\n+NX_Q9Y6R7\t572017\t5405\t5.14\t19\tCytoskeleton;Golgi apparatus;Cell membrane;Secreted\tNA\t0\tPE1\r\n+NX_Q9Y6R9\t57368\t512\t10.27\t19\tNucleus\tNA\t0\tPE1\r\n+NX_Q9Y6S9\t60036\t549\t7.06\t14\tNucleoplasm\tNA\t0\tPE1\r\n+NX_Q9Y6T7\t90595\t804\t8.11\t7\tCytoplasm\tNA\t0\tPE1\r\n+NX_Q9Y6U3\t80489\t715\t5.5\t7\tCytoskeleton;Podosome;Cell membrane\tNA\t0\tPE1\r\n+NX_Q9Y6U7\t41101\t377\t8.98\t22\tCytoskeleton;Nucleolus;Membrane\tNA\t2\tPE2\r\n+NX_Q9Y6V0\t560699\t5142\t6.07\t7\tNucleus speckle;Synapse;Cell membrane\tPontocerebellar hypoplasia 3\t0\tPE1\r\n+NX_Q9Y6V7\t54226\t483\t9.21\t19\tMitochondrion;Nucleolus\tNA\t0\tPE1\r\n+NX_Q9Y6W3\t92652\t813\t7.55\t3\tNucleus\tNA\t0\tPE1\r\n+NX_Q9Y6W5\t54284\t498\t5.38\t1\tCytosol;Cytoplasm;Cytoskeleton;Cell membrane;Lamellipodium\tNA\t0\tPE1\r\n+NX_Q9Y6W6\t52642\t482\t7.87\t1\tCytosol;Nucleoplasm;Nucleus;Golgi apparatus;Cytoplasm\tNA\t0\tPE1\r\n+NX_Q9Y6W8\t22625\t199\t9.01\t2\tCell membrane;Secreted\tImmunodeficiency, common variable, 1\t1\tPE1\r\n+NX_Q9Y6X0\t175008\t1596\t9.76\t18\tCytosol;Nucleus\tSchinzel-Giedion midface retraction syndrome;Leukemia, acute myelogenous;Leukemia, juvenile myelomonocytic;Myelodysplastic syndrome;Mental retardation, autosomal dominant 29;Leukemia, chronic myeloid, atypical\t0\tPE1\r\n+NX_Q9Y6X1\t7374\t66\t11.01\t3\tEndoplasmic reticulum membrane;Endoplasmic reticulum;Cell membrane;Membrane\tNA\t1\tPE1\r\n+NX_Q9Y6X2\t68017\t628\t7.81\t1\tNucleoplasm;Nucleus speckle;Nucleus;Cytoplasm\tNA\t0\tPE1\r\n+NX_Q9Y6X3\t69082\t613\t6.84\t19\tNucleoplasm;Nucleus;Chromosome\tNA\t0\tPE1\r\n+NX_Q9Y6X4\t74955\t670\t4.52\t5\tCytosol;Nucleus inner membrane;Nucleus envelope;Nucleus membrane\tNA\t0\tPE1\r\n+NX_Q9Y6X5\t51641\t453\t5.71\t6\tCell membrane\tNA\t1\tPE1\r\n+NX_Q9Y6X6\t206129\t1858\t6.37\t13\tCytoplasmic vesicle;Cytoplasm\tNA\t0\tPE1\r\n+NX_Q9Y6X8\t92307\t837\t6.42\t8\tNucleoplasm;Nucleus\tNA\t0\tPE1\r\n+NX_Q9Y6X9\t117823\t1032\t8.6\t22\tCytosol;Nucleus\tCharcot-Marie-Tooth disease 2Z\t0\tPE1\r\n+NX_Q9Y6Y0\t71729\t642\t5.33\t1\tNucleoplasm;Cytoplasm;Cytoskeleton;Cytosol\tNA\t0\tPE1\r\n+NX_Q9Y6Y1\t183672\t1673\t7.29\t1\tCytosol;Cytoplasm;Nucleolus;Nucleus\tCerebellar ataxia, non-progressive, with mental retardation\t0\tPE1\r\n+NX_Q9Y6Y8\t111076\t1000\t5.35\t10\tCytoplasmic vesicle;COPII-coated vesicle membrane;Endoplasmic reticulum\tNA\t0\tPE1\r\n+NX_Q9Y6Y9\t18546\t160\t8.8\t8\tCytoplasmic vesicle;Extracellular space;Secreted\tNA\t0\tPE1\r\n+NX_Q9Y6Z2\t6189\t57\t5.98\t6\tNA\tNA\t0\tPE4\r\n+NX_Q9Y6Z4\t19411\t181\t9.48\t6\tNA\tNA\t0\tPE5\r\n+NX_Q9Y6Z5\t26128\t254\t11.81\t6\tNA\tNA\t0\tPE5\r\n+NX_Q9Y6Z7\t30705\t277\t6.96\t8\tCytoplasm;Golgi apparatus;Secreted\t3MC syndrome 3\t0\tPE1\r\n+NX_Q9YNA8\t74183\t666\t9.05\t19\tCell membrane\tNA\t0\tPE1\r\n+NX_S4R3P1\t2751\t24\t5.87\t4\tCytoplasm;Secreted\tNA\t0\tPE3\r\n+NX_S4R3Y5\t2737\t24\t7.98\t1\tCytoplasm;Secreted\tNA\t0\tPE2\r\n+NX_U3KPV4\t38754\t340\t9.39\t1\tGolgi stack membrane\tNA\t1\tPE2\r\n+NX_W5XKT8\t36333\t324\t6.15\t19\tMembrane\tNA\t1\tPE1\r\n+NX_W6CW81\t12732\t113\t5.57\t1\tNA\tNA\t0\tPE1\r\n'