| Previous changeset 0:f6ebec6e235e (2019-12-19) Next changeset 2:94877d063270 (2019-12-20) |
|
Commit message:
Uploaded |
|
modified:
repex_full_clustering.xml repex_tarean.xml seqclust |
| b |
| diff -r f6ebec6e235e -r 2d43ed150abe repex_full_clustering.xml --- a/repex_full_clustering.xml Thu Dec 19 13:46:43 2019 +0000 +++ b/repex_full_clustering.xml Fri Dec 20 08:26:05 2019 +0000 |
| b |
| @@ -1,4 +1,4 @@ -<tool id="repeatexplorer2" name="RepeatExplorer2 clustering: " > +<tool id="repeatexplorer2" name="RepeatExplorer2 clustering: " version="2.3.6" > <stdio> <regex match="lastdb: can't open file: NEAR" source="stderr" level="fatal" description="Version of last is too old, use ver 956 or higher\n" /> <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" /> @@ -10,6 +10,7 @@ <requirements> <requirement type="package" version="3.7">python</requirement> <requirement type="package" version="0.9.1" >pyrserve</requirement> + <requirement type="package" version=">956" >last</requirement> <requirement type="package">mafft</requirement> <requirement type="package">imagemagick</requirement> <requirement type="package">blast</requirement> |
| b |
| diff -r f6ebec6e235e -r 2d43ed150abe repex_tarean.xml --- a/repex_tarean.xml Thu Dec 19 13:46:43 2019 +0000 +++ b/repex_tarean.xml Fri Dec 20 08:26:05 2019 +0000 |
| b |
| @@ -1,4 +1,4 @@ -<tool id="tarean" name="Tandem Repeat Analyzer" > +<tool id="tarean" name="Tandem Repeat Analyzer" version="2.3.6" > <stdio> <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" /> <regex match="error" source="stderr" level="fatal" description="Unknown error" /> @@ -9,6 +9,7 @@ <requirements> <requirement type="package" version="3.7">python</requirement> <requirement type="package" version="0.9.1" >pyrserve</requirement> + <requirement type="package" version=">956" >last</requirement> <requirement type="package">mafft</requirement> <requirement type="package">imagemagick</requirement> <requirement type="package">blast</requirement> |
| b |
| diff -r f6ebec6e235e -r 2d43ed150abe seqclust --- a/seqclust Thu Dec 19 13:46:43 2019 +0000 +++ b/seqclust Fri Dec 20 08:26:05 2019 +0000 |
| b |
| @@ -65,8 +65,9 @@ DD=os.path.basename(config.DNA_DATABASE), DDmd5=utils.md5checksum(config.DNA_DATABASE + ".nsq")) - except subprocess.CalledProcessError: + except: version_string = "version of pipeline not available!" + LOGGER.info(version_string) return version_string |