Repository 'mqppep_anova'
hg clone https://eddie.galaxyproject.org/repos/eschen42/mqppep_anova

Changeset 20:1de24bf8867c (2022-04-06)
Previous changeset 19:131cbc7dcc55 (2022-04-06) Next changeset 21:f3deca1a3c84 (2022-04-13)
Commit message:
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 927072b0b837f0ebed0def50eb677581af516140"
modified:
macros.xml
workflow/ppenrich_suite_wf.ga
b
diff -r 131cbc7dcc55 -r 1de24bf8867c macros.xml
--- a/macros.xml Wed Apr 06 19:20:42 2022 +0000
+++ b/macros.xml Wed Apr 06 20:09:36 2022 +0000
b
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@TOOL_VERSION@">0.1.10</token>
+    <token name="@TOOL_VERSION@">0.1.11</token>
     <token name="@VERSION_SUFFIX@">0</token>
     <xml name="requirements">
         <requirements>
b
diff -r 131cbc7dcc55 -r 1de24bf8867c workflow/ppenrich_suite_wf.ga
--- a/workflow/ppenrich_suite_wf.ga Wed Apr 06 19:20:42 2022 +0000
+++ b/workflow/ppenrich_suite_wf.ga Wed Apr 06 20:09:36 2022 +0000
[
b'@@ -28,27 +28,65 @@\n             "name": "Input dataset",\n             "outputs": [],\n             "position": {\n-                "bottom": 336.19168853759766,\n-                "height": 82.20000457763672,\n-                "left": 482.5333557128906,\n-                "right": 682.5333709716797,\n-                "top": 253.99168395996094,\n-                "width": 200.00001525878906,\n-                "x": 482.5333557128906,\n-                "y": 253.99168395996094\n+                "bottom": 290.16561126708984,\n+                "height": 82.1624984741211,\n+                "left": 515.090576171875,\n+                "right": 715.0874328613281,\n+                "top": 208.00311279296875,\n+                "width": 199.99685668945312,\n+                "x": 515.090576171875,\n+                "y": 208.00311279296875\n             },\n             "tool_id": null,\n             "tool_state": "{\\"optional\\": false, \\"format\\": [\\"tabular\\"], \\"tag\\": \\"\\"}",\n             "tool_version": null,\n             "type": "data_input",\n-            "uuid": "78170155-4d6c-461b-a289-bcf0196b87db",\n+            "uuid": "c366566c-2a61-4918-b4ea-c1f565c4f2ca",\n             "workflow_outputs": []\n         },\n         "1": {\n+            "annotation": "THIS IS pST BY DEFAULT.  Change if your data are enriched for pY.",\n+            "content_id": null,\n+            "errors": null,\n+            "id": 1,\n+            "input_connections": {},\n+            "inputs": [\n+                {\n+                    "description": "THIS IS pST BY DEFAULT.  Change if your data are enriched for pY.",\n+                    "name": "enrichmentType"\n+                }\n+            ],\n+            "label": "enrichmentType",\n+            "name": "Input parameter",\n+            "outputs": [],\n+            "position": {\n+                "bottom": 375.7687225341797,\n+                "height": 61.76249694824219,\n+                "left": 531.1312255859375,\n+                "right": 731.1280822753906,\n+                "top": 314.0062255859375,\n+                "width": 199.99685668945312,\n+                "x": 531.1312255859375,\n+                "y": 314.0062255859375\n+            },\n+            "tool_id": null,\n+            "tool_state": "{\\"restrictions\\": [\\"pST\\", \\"pY\\"], \\"parameter_type\\": \\"text\\", \\"optional\\": false}",\n+            "tool_version": null,\n+            "type": "parameter_input",\n+            "uuid": "5f31b776-9e2b-4f3a-a9e6-886ac2062e15",\n+            "workflow_outputs": [\n+                {\n+                    "label": null,\n+                    "output_name": "output",\n+                    "uuid": "1ff7eb95-9dd3-4006-ab0b-03e4f84a1aa5"\n+                }\n+            ]\n+        },\n+        "2": {\n             "annotation": "Pattern matching columns that have peptide intensity data (PERL-compatible regular expression matching column label)",\n             "content_id": null,\n             "errors": null,\n-            "id": 1,\n+            "id": 2,\n             "input_connections": {},\n             "inputs": [\n                 {\n@@ -60,27 +98,33 @@\n             "name": "Input parameter",\n             "outputs": [],\n             "position": {\n-                "bottom": 443.9083480834961,\n-                "height": 82.20000457763672,\n-                "left": 510.5917053222656,\n-                "right": 710.5917205810547,\n-                "top": 361.7083435058594,\n-                "width": 200.00001525878906,\n-                "x": 510.5917053222656,\n-                "y": 361.7083435058594\n+                "bottom": 576.2812118530273,\n+                "height": 102.56249237060547,\n+                "left": 590.1468505859375,\n+                "right": 790.1437072753906,\n+                "top": 473.7187194824219,\n+                "width": 199.99685668945312,\n+                "x": 590.1468505859375,\n+                "y": 473.7187194824219\n             },\n             "tool_id": null,\n             "tool_state": "{\\"default\\": \\"^Intensity[^_]\\", \\"parameter_type\\": \\"t'..b'              "id": 3,\n                     "output_name": "output"\n                 }\n             },\n-            "inputs": [],\n+            "inputs": [\n+                {\n+                    "description": "runtime parameter for tool MaxQuant Phosphopeptide ANOVA",\n+                    "name": "alpha_file"\n+                },\n+                {\n+                    "description": "runtime parameter for tool MaxQuant Phosphopeptide ANOVA",\n+                    "name": "input_file"\n+                }\n+            ],\n             "label": "MaxQuant Phosphopeptide ANOVA randomly imputed",\n             "name": "MaxQuant Phosphopeptide ANOVA",\n             "outputs": [\n@@ -773,14 +840,14 @@\n                 }\n             ],\n             "position": {\n-                "bottom": 1994.1084289550781,\n-                "height": 367.6000061035156,\n-                "left": 1319.6083984375,\n-                "right": 1519.608413696289,\n-                "top": 1626.5084228515625,\n-                "width": 200.00001525878906,\n-                "x": 1319.6083984375,\n-                "y": 1626.5084228515625\n+                "bottom": 2106.0374145507812,\n+                "height": 367.51873779296875,\n+                "left": 1399.153076171875,\n+                "right": 1599.1499328613281,\n+                "top": 1738.5186767578125,\n+                "width": 199.99685668945312,\n+                "x": 1399.153076171875,\n+                "y": 1738.5186767578125\n             },\n             "post_job_actions": {\n                 "RenameDatasetActionimp_qn_lt_file": {\n@@ -806,25 +873,25 @@\n                 }\n             },\n             "tool_id": "mqppep_anova",\n-            "tool_state": "{\\"alpha_file\\": {\\"__class__\\": \\"ConnectedValue\\"}, \\"imputation\\": {\\"imputation_method\\": \\"random\\", \\"__current_case__\\": 3, \\"meanPercentile\\": \\"1\\", \\"sdPercentile\\": \\"1.0\\"}, \\"input_file\\": {\\"__class__\\": \\"ConnectedValue\\"}, \\"intensity_column_regex\\": \\"^Intensity[^_]\\", \\"sample_grouping_regex\\": {\\"__class__\\": \\"ConnectedValue\\"}, \\"sample_names_regex\\": {\\"__class__\\": \\"ConnectedValue\\"}, \\"__page__\\": null, \\"__rerun_remap_job_id__\\": null}",\n+            "tool_state": "{\\"alpha_file\\": {\\"__class__\\": \\"RuntimeValue\\"}, \\"imputation\\": {\\"imputation_method\\": \\"random\\", \\"__current_case__\\": 3, \\"meanPercentile\\": \\"1\\", \\"sdPercentile\\": \\"1.0\\"}, \\"input_file\\": {\\"__class__\\": \\"RuntimeValue\\"}, \\"intensity_column_regex\\": \\"^Intensity[^_]\\", \\"sample_grouping_regex\\": {\\"__class__\\": \\"ConnectedValue\\"}, \\"sample_names_regex\\": {\\"__class__\\": \\"ConnectedValue\\"}, \\"__page__\\": null, \\"__rerun_remap_job_id__\\": null}",\n             "tool_version": null,\n             "type": "tool",\n-            "uuid": "b239a226-854c-4fbc-8955-cadd968f0704",\n+            "uuid": "e71562a7-c941-429d-99a8-e14721df3670",\n             "workflow_outputs": [\n                 {\n                     "label": "intensities_randomly-imputed",\n                     "output_name": "imputed_data_file",\n-                    "uuid": "8e403d6c-8f47-4f78-addd-da8923695135"\n+                    "uuid": "e27c540b-07d0-496f-8b11-b4c1472dce12"\n                 },\n                 {\n                     "label": "intensities_randomly-imputed_report",\n                     "output_name": "report_file",\n-                    "uuid": "2c54a01e-ca12-4769-b370-cf137fe4b3f4"\n+                    "uuid": "abe2dbf4-956d-4625-a0e1-ad1c6c988a7c"\n                 },\n                 {\n                     "label": "intensities_randomly-imputed_QN_LT",\n                     "output_name": "imp_qn_lt_file",\n-                    "uuid": "5fa4acc2-b82f-41e8-aedc-6efdc73f3d58"\n+                    "uuid": "cb5b1d8f-905b-453a-a479-507e01a8f8f7"\n                 }\n             ]\n         }\n@@ -832,6 +899,6 @@\n     "tags": [\n         "ppenrich"\n     ],\n-    "uuid": "23c8a0f0-218f-4ba7-9470-ec826d16243a",\n-    "version": 19\n+    "uuid": "234db768-520c-4eaa-a5be-061e3d858682",\n+    "version": 2\n }\n'