| Previous changeset 5:64fcb9c72e47 (2017-10-14) Next changeset 7:18d17a5bfe11 (2017-10-15) |
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Commit message:
planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/porechop commit 083a08f96c17f3116dce1dc1573192860f41ed70-dirty |
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modified:
porechop.xml |
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| diff -r 64fcb9c72e47 -r 15e64c5938e6 porechop.xml --- a/porechop.xml Sat Oct 14 23:08:38 2017 -0400 +++ b/porechop.xml Sun Oct 15 12:30:20 2017 -0400 |
| b |
| @@ -1,4 +1,4 @@ -<tool id="porechop" name="Porechop" version="0.2.1"> +<tool id="porechop" name="Porechop" version="0.2.2"> <description>Demux and adapter removal</description> @@ -162,7 +162,7 @@ <test> <param name="input" value="test_barcodes.fastq" ftype="fastq" /> <param name="demux" value="yes" /> - <output_collection name="output_collection_fastq" type="list"> + <output_collection name="output_collection_fastq" type="list" count="4"> <element name="BC01.fastq" file="bar1/BC01.fastq" compare="diff" decompress="true"/> <element name="BC02.fastq" file="bar1/BC02.fastq" compare="diff" decompress="true"/> <element name="BC03.fastq" file="bar1/BC03.fastq" compare="diff" decompress="true"/> @@ -173,7 +173,7 @@ <param name="input" value="test_barcodes.fastq" ftype="fastq" /> <param name="demux" value="yes" /> <param name="require_two_barcodes" value="True" /> - <output_collection name="output_collection_fastq" type="list"> + <output_collection name="output_collection_fastq" type="list" count="4"> <element name="BC01.fastq" file="bar2/BC01.fastq" compare="diff" decompress="true"/> <element name="BC02.fastq" file="bar2/BC02.fastq" compare="diff" decompress="true"/> <element name="BC03.fastq" file="bar2/BC03.fastq" compare="diff" decompress="true"/> @@ -184,11 +184,11 @@ <param name="input" value="test_barcodes.fastq" ftype="fastq" /> <param name="demux" value="yes" /> <param name="trim" value="yes" /> - <output_collection name="output_collection_fastq" type="list"> + <param name="discard_unassigned" value="yes" /> + <output_collection name="output_collection_fastq" type="list" count="3"> <element name="BC01.fastq" file="bar1_trim/BC01.fastq" compare="diff" decompress="true"/> <element name="BC02.fastq" file="bar1_trim/BC02.fastq" compare="diff" decompress="true"/> <element name="BC03.fastq" file="bar1_trim/BC03.fastq" compare="diff" decompress="true"/> - <element name="none.fastq" file="bar1_trim/none.fastq" compare="diff" decompress="true"/> </output_collection> </test> </tests> |