| Previous changeset 9:e3ad639c692a (2017-12-01) |
|
Commit message:
planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/porechop commit 83364d7d78ca5524a08065daef995bfcd54a379d-dirty |
|
modified:
porechop.xml |
|
added:
test-data/no_demux.fasta |
| b |
| diff -r e3ad639c692a -r 0cb1ba651e9e porechop.xml --- a/porechop.xml Fri Dec 01 21:27:15 2017 -0500 +++ b/porechop.xml Fri Dec 01 21:36:54 2017 -0500 |
| [ |
| @@ -131,6 +131,7 @@ <outputs> + <!-- Demuxed --> <collection type="list" name="output_collection_fastq" label="${tool.name} on ${on_string}"> <filter>out_format == 'fastq'</filter> <filter>demux_section['demux_options']['demux'] == 'yes'</filter> @@ -141,6 +142,11 @@ <filter>demux_section['demux_options']['demux'] == 'yes'</filter> <discover_datasets pattern="__designation_and_ext__" directory="out" format="fasta" /> </collection> + <data format="tabular" name="result_table" label="${tool.name} on ${on_string} (summary)"> + <filter>demux_section['demux_options']['demux'] == 'yes'</filter> + </data> + + <!-- Not Demuxed --> <data format="fastq" name="ouput_fastq"> <discover_datasets directory='out' pattern="(?P<designation>.+)" ext="fastq" visible="true" assign_primary_output="true" /> <filter>out_format == 'fastq'</filter> @@ -152,7 +158,6 @@ <filter>demux_section['demux_options']['demux'] == 'no'</filter> </data> - <data format="tabular" name="result_table" label="${tool.name} on ${on_string} (summary)" /> </outputs> <!-- ***************************************************************** --> |
| b |
| diff -r e3ad639c692a -r 0cb1ba651e9e test-data/no_demux.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/no_demux.fasta Fri Dec 01 21:36:54 2017 -0500 |
| b |
| b'@@ -0,0 +1,640 @@\n+>1\n+AGCGTTGTCCCTGTTGAACTTGAACTCCAGATAGTAAGACTGATCAATACCTGATTCACGATAGTACCCC\n+AAAACCGTATTGACAAGAAAAGAGGGTAGTACCTAAGAAGTATTGTCGAGATATGTCGGAGGCAGTGGTC\n+GACGTGCGCTATATGTGCGCGACAGGCTGGGAGCAGTGGTGCGACCAAGTATTTCGAAGGCTATTCGCTT\n+TTCCGAAATTCCCTGTACAGGGACATAACGTTACTAATGACACAGTGATCGCTGTCTGCGTAATACCGGA\n+TATACGGGGCCGCAATAATGTTGTCGCATCCATGCCCTAACCCTAGGAACACTGGAGAGTCTAGTGTGCC\n+GAGATCCATCCCGGGCCGAACGCGTACAAGATTAAAAGTCCTGTCTACAGCATCGCGGGTCATTGATGTA\n+GGAAGTCGGGATTACCGGGTTACCGGCGCGTGCACACTTCCATTTTTCTTAAATAAGCATTAGCGTTTCG\n+TACGACTTACCACTAAGGCGCTTGCAGAACTTATGCCCAGTTGCAGGAACACAGGGACAACATCTTACAC\n+CGAGGTTCGAATGGGGTTGCTGCATTCGGTGGCTTAAGTTTCTAATGAGGTTGTTCTCTCCGATTTGCAC\n+GTGCTGTCTTCGGACCTTTTTGAGTTGGGTTACAGGGTTTAGTATCAACCCTTCGTCCGTGCCATGCAAG\n+GGCTGTGCGAAACGAATGAAGCTGAAATGTCTCAGCGAAGGGCGGTTCAGCTGAATATACCACTATAGCC\n+TAGACTCTTTGGTTTGAAGTGGTGCCACGTGGACCAGAGTGAGATATACTGCGTCACTGCTAAGGTAATC\n+AAGAGTCAGTCGATTAGGTGAGCGTGTCCTCGGGGTATCGCCGGCTGTAGGGGTCCGTTTCAGCACGCAG\n+CGCTTTAACGAAGGAACCTAGCTGGCGAAGATTCTGATTAGCCAGTAACCTGGCCCATTTAGGGAGGTAC\n+AAGGGTGGTACCTACTACGTTAATAGCTGAACCGGTGGAACATACGCACAGTCCCTTAACGATGCGTCCG\n+TCCATAAAACCCATATAGTACTTAGTGGATCCTTTCGGATGCCGCGAATATCTGAATAGCCAGTCTCGCT\n+CCCACATACTGATGTCAGCAAACGCACAGTGTCAAGGACCGTGAGCACTGATGGGTTACATATGGCTGTC\n+GTCGGGACGCCGGAAAGGTGCAAGGTGTATCTACCTCCAGTTTGGCGGGCGATAGGTAACCACGGAGGTG\n+TTACCATCCCATGCGATTTCAATAGGAGAACAGCTTAGAATGCTCGAAGGAAGGCACATATGTCTCATGG\n+GCCATCGACGATCATCTGTAGCGCGCGCCACCGCCGTACTCATGCAATTACTTCAGATTCGGGCAAGAAT\n+GCATAACGCCGAATAGATCATCTAACTGTAGGAAGCCAGCTAATTCTGTGGTAAGTCAAGCTTTGATGCG\n+CTTGACCAGTACTAGGCACAAAGGCCTCCCGGTACTACATAAGTCCTCTTGGTTCCTAGGCACTTCATCA\n+TCACATTCTGCAGTGATAAACTCATCGCAGTCATACACTGGTAAATCTTAATCAGGTCTATATGGCCTCC\n+CCAAAAACCTGGGGGGACTTCATTTGGCCTGTCTCGCTGCGCACACGTTGTTAGACTACTCCAACAGTCG\n+TACAAGCAGGGGCGACAGACCTCATCACTTGAAGCACTGAGGTGTCACAGGTGGGATCCCCGTGCCCTTG\n+TATTCTGCGTGCAGTAGAACTGAGCTGTGCTGTACAAATACCGAAGATTCGCTCGTTCAATCTACCACCC\n+TGCGCGCTCATCCTAGCTCTGCGGCCAAACTTGATAGGTATGTACTGATCCGGCTATGGGGCCTTTGTGC\n+ACGTCATCCGAACTCGACAGGACCACTCGTCGTTTAGACAGTCCGAATTTAACTACGTCCACACGACGTG\n+GTGCTGGTTTACGACAACATTCAAGCGTTCGAGTCCGTGTACTTTGCTCGTATTGAACTTCCGGCTAATC\n+ACTGGTACACAGTACCATCTGTACCGTGTGGAAGCGTGGGCGTCTATGCATAGGCGGACAATGGACTTAA\n+ACCAATTAAATACTTGAAATGTCTGGACACGCTGTGTTTACCACGTCGCGGCCGTCTCCCGGCGAAGGAG\n+AGTCCGAGGTCCCTGTTGTTGTGACACGTTTGCGGCGGTACGAAACGCTGTCGAGGACATCGTATCGCCT\n+CCGTGAGCGCAAGGCTGTTCCTGTCCAACTATAGTGTTGGGCTATTGTAGGCGCCTACTAGCTCGCCTTT\n+TAGATGCGACTGCTCTTCTGACGGTCACCTGGCACCGATTTATCTCGCAAGGCGATCTACGATGACAACT\n+AATAACGTTTCTTGACCCCTTTAGACCGTGGCTGTGCTTTAGAAGACGCTGTGGGCGGTTGTTGGGATTG\n+CCCAATAATGGTGATTCTATAGTGTAAGCACAAAGGTCGGATCGATGATGATCCAAACCCAGAAGCTCCT\n+ACTTATTTACGTGGCATCCCCGGTCGAAGTAGGCTTGCCGAGCAATAGAGTCTAAGGCAGAAATTAAGAT\n+TATGTAATATAATCCCCATATAGCAAGGATGTACAATAGTAATGTCAGATCGAATTGTGCATGCATAGGA\n+GCAACGGCTGGCGCTGAAGCGGGTACTGTCGTCCCTAAATCTCAGGCATACTTGCTAGTTTGGTCGAAAT\n+ATTGCGGCCTCTGATAGGCCTTTAGGACAGTTGAAATTCGTGACTGACCATTTGCGTGAGATCAACTGAG\n+CTCTGGAAGTTTTGGGACCTCGATTCGGGCGACAGCGACACGCAGCGGCAGTAGGACAGAATTCATGTCA\n+GAAGGGAATAAGTTGGTGCAAATAGCTCCTAATCCTCTTATGGGTGACGGCGAGACAGCTGTCGACGGAA\n+ATATGGTCGATGCCCGGCATAATAGGAATCTAAGGTGGACCCTATCAGGACAAACCGATAAAATTCCCTG\n+CTGGTATCTAAGTAAACCACCACCGTAGACTTGCAGGCGCCCAAAATTGGCTCATGTAGACTTCTTGGAA\n+AAAAGTGTTAGGCCTCGAACTGCGCCTACGGGGTTACTTCCTGCCGTAGAGCAAAACTGCTTTAATGATA\n+ATGCTCTCCCCACCCATTCGCGAATCGCTTAAAAAGAGCATCAAAATTGCTTGGATAGCTAAGAGAACAA\n+CGACTGACTGGGTAGTCTGCTACTCCTTGCCCTGCTACCGTCTTTTCATAGTATGATGCTTCGCAAACAG\n+GCGGCGTTTTACGGGGATGCTCGAAAAGTACACTTTCACCATTTACCTCGCGCTGGACTATCAGTGGATT\n+ATTAGTATTACGCTTCATTGTTGGCCGGAGGGGTTCCCACTACGGTTTCAAGCTGCTTAACCAGTTTCCT\n+GATGAACTCAGGCGCGTGGCACGACTTCGAGTTATCCAGTCCGTGTCCATCGTCGATTTCGCCCGTCCAT\n+ACATAATGTGAATTACAGTCAGGACTACCTAAGTTACAAATATCTCCAGGGGTCTGTAAAGCCCGAGGCC\n+GGAAACGGAGCACTCACCCCATCCGACTTGTAGATTCCAACAGCTGGCAGATCCCTCCTTCGGCAGGAAA\n+CTTTGGTAAATTAATGTAGGCCACCTAAGCTAAGATCTTGGTGAACTGTGCTAGTGCACTGACTCCGTTA\n+GCAGATTTTTCCGGACTTTTCAGCTCTTTTGATTGTTACCACAACCAGGCCATCGCGCCACAATAGGCAG\n+ATCACCCGGTGAAACGTAATGACTTCGGTGCTGGCACAAGGCACTACACAACTTCGGGCGAGGATCTAAA\n+CTCCGTGTACTTGCGG'..b'TTGCTTTCAAGACCCT\n+GTGCTGTGACTTCTAGTTCCCCGGGACATGGAATGTAAGTTGTCTGTTTCGTAGCCGAGGCACGGATAAT\n+TGTAGACAGCGGCCGTAAGTTAGGCTCTGATCAACTGTTTCACACGCCTCATATTTACAAAGTTTTTGAG\n+GATTTATTCCGCTACGTATAGGTCAGTACTTAGAACGCTTTAAGAATCCCTATTCTTAGTTGACTCTCGG\n+CAGTAGCAGTGGGGAGCAATAAATCGTGTGGCACCATCCGGTGACAATCGAGGACTGAACGCGAGTATAT\n+AAGAACACAATCTTCTTAGCGCCCGGCATTGGTCGTGTCGCGTTGGTACTCGTGATATACTACGCGCAGT\n+AGTGTACGACGTCCTGTATGCGGCTGTATTGTCGTGGCCTCCTCACTACCAAACTGACGTTCCTTTCGGT\n+TGGAGCGCCTGTAGTCGACAAGCAGACGTTCAGGATCAATATGAGAGGGAATCCAAAGGCTACTAATCAG\n+AAGTGTAAGCCCGTAAAGGGCATGAGTAGCAGAACGTACGATACGGCTGGGACTAGAGTAAATAATTGCT\n+AGGCGGAGACGATAATCTATCTTTAAACTCACTGTGCGTATTACTCGGTGATCAAGAAAACGAAGCGCTC\n+GCGCATTACAGACACATTTTGAAATACGCCTATTACATTACGGTCATAGTTCTTGCGATCCTGCCGAATT\n+ACGCTACGTAGCCAAACGTATTTCAACGCGGGGGCAACACGATATGTAGCCAGGTTCTCCACCACCGGCG\n+ATTTGCCTCGATATCTAAAGGGCCGACCGGACGGGTTGTAGACGAGGCTGGCACCCACCCCCTTACCGTA\n+CGAGATCAACTTGTGCTCTGCAAGCGAGAGGTATGCGGGACACCCGGCCCATTTTCTGTTCAACGGTCTT\n+CTTCAGGATTAGTAGTCAACTTGAATATCCCTGAAGCTCTTAAAGTCGATACACGAGGCGCGTTTCATAG\n+CCGCAAGTAAAGATAAGTTAGCTAATTGGTAAGTAGTGAGAGCAGTGCGGAGCTCTGGAGAGGCCGTCCC\n+TTTCGGGAGCTTCCGTTCTTCTAGGTGCACAGAAGACGTCCTCATTGTGTTTCCTGCCTAGCGCGAGCAG\n+ATGGAAAACTCGCACTATCCTCTTCTAATGCGCAAGATTCGTATAGTGCATATATGGCAGGTAATGTCTA\n+ATCCACCATAGGTTGACAGAGAGACACACCCCCGCAAGCCTTTCTCATAAGGGGCTGCCTCCTATTTGTG\n+TCCGCAGATCTAATCTCGTCGCGTTACTGCGCTCTTAATAGTCGTACCAAAGAACTAGGAGACTTTACCG\n+CTTATCGTAGCGGTTGATACCACAAATCGGGGAAAGTATAAGAGTTTGGCACGTAGTCTAACGATTTGAT\n+CATTGGAAGTAGTGCTAAGGGTACCGGCACCTCGTAGTGCCCTATGGATACATATCTCGCTCAAGCAGAC\n+CGCAGACAGCAACCACCTCCACGCCGTCAAATCGGTATTACCCCCACAGACGACCGCGAGACTTGAAAAA\n+TACCAGAGGAGTATGAGTGCTGACAGTAGTAATAGGTTAGAGTCAGACACCGTAAAACAGCACCGTGCGC\n+ATCGTCGCCCGAAGGGAGGGAAGTTAGTCGCTAACCAATGACGTACCGGTTTGAGTTGCTTACGATGACG\n+CCAGGGTGTCTACGGATGACGAGTGTAGTCGTTCGCTATGCCGACTACGATTCATACATCCCTCCAATTT\n+GCTGCTCCCGCCGCAAAAGTCAGAGTTGAATCCGCATATGTGCGGCTTTCAGGAGCTACCCTAGACGGGG\n+TAATATTTGATCGGTCCCGTATCACGTCACTTTGGACCATTGGAGTAGGACAAGTCCCCACGACTGCCGC\n+CCGACATATAGGCATCTGCTCGGGAAGGGATACAGAAAGCACCTGCCCTCCAAGTTTACAAATATAGCAG\n+GTAATAGAACGACATAGCTACTCCAGCATATTTTTTTCTTGGTTCTGGCCCGCATCTCAATATTATCTCT\n+CTCTTCTTGTCACTAGGCGGATTATGGATGCTAATGCTTGCCCTCTATGCCCTATGCATTACGCAAGCCC\n+CATGTAGGTATAGGGGGTAGGATTAAACCGGGGCGTTATTATCTCGTTATTATGAAAACGGTGTTGCTGC\n+GTGAGGATAGTGTTAGGCTTACAAGATATATGTGCGTAGTCCTGGATTTACGGGTTCCGCTAGCACATCG\n+ACGGGAGCGAGTGCGCAATTAGATCTATTGGCGTGGCGGACCCGCCATAGTGGGACCTGCGATCCGTCTG\n+ATTACTATACAACCCGGGGGTCATACCACGGTGAGATCTGAGCCCGGTTTATTTAGTGCCGCTCCACCAG\n+CTGTATGGCCGACCTGGCGTCCTTAGGGGTATTGTAGTGGCGCCACAACTTTTCTTAAGTGTTTCCGCGG\n+CTCTTTGCTACACGGTTATCTCACTCATAGTAGTCAAGGACGTCGACTAAGGCCCTTTAATGGCCGTGGC\n+GGAGGGTGGTGATACACCTGGGAGAAAAAACACCCCTACATCATCTATCGTCTCTCCATAGGGGCCTGTA\n+TCTTGATAGGTAGCTCCAACTGTTCAAGCAGGACGGTGATTTCGGTCGCGGGAGAGAGCTAGGTCGGGAG\n+TCGGGTTTGTGACTATGTGAATGAAGACGCACTCCAACTCCTTGCTCCCATGGGATCGAATATTAATAAA\n+ATGGACTTTTTCGAGCGGAGCTCGACAACGTGCATCGGTAGTGTGAAATTGCGGTCTATTCATCATCAAC\n+ACGAAAGGCCCCTCGACGGCCAAGAGGTCTGGCGATGTGTAACACAGGTTGGGCAGGTAAAATATATCGA\n+AAGATGCAGTCCTGGTTGGCGGGAAGTGCTATGTGAATGACCATGTGATGTAGTCTATCCTAGAACCGTC\n+CCGGGCTGTTTGAACGCGAAGTAGATATTTGCTCGAACGTGAAGTTAGTGTCAGCAGACAGACTTAATGT\n+GAGACAGCGGCTCACACGTCCCCATTTTACAAGACCTAGACATGGCTGTCATCTAGGGCCATAGGCGTCG\n+TAGGTTCAAACCTATTACACATAACACAGGGGTCCCGAGAACGCTATTCTTTTTTCAGGAAGAGCGATGT\n+CTTCTAGGCTACAGCTTTAATGGTCAAAAAATTATGCGACCACCGTAACGTGAAGGAGATGCGGCATTTT\n+ACATCTGGGTTAGGTTGTTCGTTTAACCCTGTGCATGTTCGGTCAGCTGCTCAGGCGCTCCTTCCTTCTA\n+GGAAACTTGTGGAAACGCAGAGAAGACATGGCGGTCTCCGTCCTTCAGGGTAAGTTAGTTCCGCAACTAA\n+TGACATAAGTTCTTGCGAGACAGCTACATACCGTTCAGGAAAGAGTGAACAAAGTAGTGATAGAAGGCTC\n+TTGGGCCTATCATAAACCACTAGGATCTATTGGGGGGGTAGTGCAGAGCGTGGTTATATGCGGGTATAGA\n+GGGAGCACACAGTACGTCTGAAGCTATTGGTGAAGCTAACTATTTCGATCATGTTGTAGATCTTACAAAT\n+GTTTTCGCCTAATTGAGGGTGATTCATCATGGATCGAGCGATTGTTATTCGTACCGGTAATCCTTCCGTG\n+CAGTACATTGCAGCCGTGCAATATCGACCGTTTTTCCCCTGTGCCTGGCTACAGCCAAGTAAATGGTGGC\n+CTCACATATGTTCTCTAATAAGTGTTCAGTTTTCGGTTAGGCCACTTAGCTGTATCGCGGACTTGACCAC\n+TAGCAGATAACGGATCATCTGAACTACGCTGCAAGCGACTAGCGTGAGATTTGAATAGTCAAGGAAGGCT\n+GGAGACGGAGCAGCCGACCA\n' |