Galaxy | Tool Preview

DropletUtils Read10x (version 1.0.3+galaxy2)

Read 10x-Genomics-formatted mtx directory (Read10xCounts())

The mtx directory should contain:

  1. Raw expression quantification as a sparse matrix in Matrix Market format, where the each column is a gene and each row is a barcode/cell.
  2. A gene table of at least two columns where the first column gives the gene IDs.
  3. A barcode/cell table of at least one column giving the barcode/cell IDs.

The above-mentioned files can be obtained by running EBI SCXA Data Retrieval with a dataset accession.

@HELP@