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1 <macros>
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2 <xml name="requirements">
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3 <requirements>
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4 <!--
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5 Use older version of NCBI BLAST+ because 2.6.0 is available
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6 through bioconda but not through the Galaxy toolshed
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7 -->
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8 <requirement type="package" version="2.5.0">blast</requirement>
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9 <yield />
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10 </requirements>
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11 </xml>
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12 <xml name="citations">
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13 <citations>
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14 <citation type="bibtex">
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15 @article{Morgulis_2005,
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16 title={WindowMasker: window-based masker for sequenced genomes},
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17 volume={22},
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18 ISSN={1460-2059},
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19 url={http://dx.doi.org/10.1093/bioinformatics/bti774},
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20 DOI={10.1093/bioinformatics/bti774},
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21 number={2}, journal={Bioinformatics},
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22 publisher={Oxford University Press (OUP)},
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23 author={Morgulis, A. and Gertz, E. M. and Schäffer, A. A. and Agarwala, R.},
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24 year={2005}, month={Nov}, pages={134–141}
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25 }
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26 </citation>
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27 <citation type="bibtex">
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28 @article{Cock_2015,
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29 title={NCBI BLAST+ integrated into Galaxy},
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30 volume={4},
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31 ISSN={2047-217X},
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32 url={http://dx.doi.org/10.1186/s13742-015-0080-7},
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33 DOI={10.1186/s13742-015-0080-7},
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34 number={1},
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35 journal={GigaScience},
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36 publisher={Oxford University Press (OUP)},
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37 author={Cock, Peter J. A. and Chilton, John M. and Grüning, Björn and Johnson, James E. and Soranzo, Nicola},
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38 year={2015}, month={Aug}
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39 }
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40 </citation>
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41 <yield />
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42 </citations>
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43 </xml>
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44
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45 <!-- Helper function to add optional advanced parameters to command -->
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46 <token name="@OPTIONAL_PARAM_FUNC@">
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47 <![CDATA[
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48 #def optional_param($_flag, $_flag_value, $_sep=" ")
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49 #if str($_flag_value) and str($_flag_value).strip():
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50 ${_flag}${_sep}${_flag_value}
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51 #end if
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52 #end def
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53 ]]>
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54 </token>
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55 </macros>
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