Mercurial > repos > yating-l > ucsc_trix_index_generator

comparison trixIndex.xml @ 1:c1ebe32249b0 draft default tip

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planemo upload commit 81955d80a45c04ad4874f19f43c36ca608b3735e
author yating-l
date Mon, 06 Nov 2017 15:38:14 -0500
parents 45cb248771d2
children
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0:45cb248771d2 1:c1ebe32249b0
26 <param name="input_file" type="data" format="fasta" label="Fasta File" argument="-f"/> 26 <param name="input_file" type="data" format="fasta" label="Fasta File" argument="-f"/>
27 </when> 27 </when>
28 </conditional> 28 </conditional>
29 </inputs> 29 </inputs>
30 <outputs> 30 <outputs>
31 <collection name="trix_index" type="list" label="Trix index"> 31 <collection name="trix_index" type="list" label="${tool.name} on ${on_string}:Trix index">
32 <data name="index_ix" format="txt" from_work_dir="output.ix"/> 32 <data name="index_ix" format="txt" />
33 <data name="index_ixx" format="txt" from_work_dir="output.ixx" /> 33 <data name="index_ixx" format="txt" />
34 </collection> 34 </collection>
35 </outputs> 35 </outputs>
36 <tests> 36 <tests>
37 <test> 37 <test>
38 <param name="input_type_selector" value="fasta" /> 38 <param name="input_type_selector" value="fasta" />
39 <param name="input_file" value="dmel-hits-translation-r6.11.fasta" /> 39 <param name="input_file" value="dmel-hits-translation-r6.11.fasta" />
40 <output_collection name="trix_index" type="list"> 40 <output_collection name="trix_index" type="list">
41 <element name="index_ix" file="out.ix" /> 41 <element name="index_ix" value="out.ix" />
42 <element name="index_ixx" file="out.ixx" /> 42 <element name="index_ixx" value="out.ixx" />
43 </output_collection> 43 </output_collection>
44 </test> 44 </test>
45 <test> 45 <test>
46 <param name="input_type_selector" value="tab" /> 46 <param name="input_type_selector" value="tab" />
47 <param name="input_file" value="dmel-hits-tab" /> 47 <param name="input_file" value="dmel-hits-tab" />
48 <output_collection name="trix_index" type="list"> 48 <output_collection name="trix_index" type="list">
49 <element name="index_ix" file="out.ix" /> 49 <element name="index_ix" value="out.ix" />
50 <element name="index_ixx" file="out.ixx" /> 50 <element name="index_ixx" value="out.ixx" />
51 </output_collection> 51 </output_collection>
52 </test> 52 </test>
53 </tests> 53 </tests>
54 <help> 54 <help>
55 <![CDATA[ 55 <![CDATA[