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view tool_dependencies.xml @ 23:ba64ea834baf draft

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planemo upload commit ba2dda809a7db0939961b9d9d237a37adca85a0e-dirty
author yating-l
date Fri, 12 Aug 2016 18:57:05 -0400
parents 04e57f9ef873
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<?xml version="1.0"?>
<tool_dependency>
    <package name="snap" version="1.0">
        <install version="1.0">
            <actions_group>
                <actions>
                    <action type="download_by_url">http://korflab.ucdavis.edu/Software/snap-2013-11-29.tar.gz</action>
                    <action type="shell_command">make</action>
                    <action type="move_directory_files">
                        <source_directory>.</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>
                    <action type="set_environment">
                        <environment_variable name="ZOE" action="set_to">$INSTALL_DIR</environment_variable>
                        <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                    </action>
                </actions>
            </actions_group>
        </install>
        <readme>SNAP is a general purpose gene finding program suitable for both eukaryotic
            and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid
            Parser.
        </readme>
    </package>
</tool_dependency>