Mercurial > repos > yating-l > snap

annotate tool_dependencies.xml @ 25:cf05d455fe47 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 491d5e5ca363640def2a7e537da6affda72868e0
author yating-l
date Thu, 22 Dec 2016 11:36:58 -0500
parents 04e57f9ef873
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
9a301a99a56c planemo upload commit 0ba99fe246099cc1827f71f2722d253becee64ba
yating-l
parents:
diff changeset
1 <?xml version="1.0"?>
9a301a99a56c planemo upload commit 0ba99fe246099cc1827f71f2722d253becee64ba
yating-l
parents:
diff changeset
2 <tool_dependency>
20
04e57f9ef873 planemo upload commit 6e3286c6569d531846474dcd6959378af0317ce3-dirty
yating-l
parents: 19
diff changeset
3 <package name="snap" version="1.0">
04e57f9ef873 planemo upload commit 6e3286c6569d531846474dcd6959378af0317ce3-dirty
yating-l
parents: 19
diff changeset
4 <install version="1.0">
04e57f9ef873 planemo upload commit 6e3286c6569d531846474dcd6959378af0317ce3-dirty
yating-l
parents: 19
diff changeset
5 <actions_group>
04e57f9ef873 planemo upload commit 6e3286c6569d531846474dcd6959378af0317ce3-dirty
yating-l
parents: 19
diff changeset
6 <actions>
04e57f9ef873 planemo upload commit 6e3286c6569d531846474dcd6959378af0317ce3-dirty
yating-l
parents: 19
diff changeset
7 <action type="download_by_url">http://korflab.ucdavis.edu/Software/snap-2013-11-29.tar.gz</action>
04e57f9ef873 planemo upload commit 6e3286c6569d531846474dcd6959378af0317ce3-dirty
yating-l
parents: 19
diff changeset
8 <action type="shell_command">make</action>
04e57f9ef873 planemo upload commit 6e3286c6569d531846474dcd6959378af0317ce3-dirty
yating-l
parents: 19
diff changeset
9 <action type="move_directory_files">
04e57f9ef873 planemo upload commit 6e3286c6569d531846474dcd6959378af0317ce3-dirty
yating-l
parents: 19
diff changeset
10 <source_directory>.</source_directory>
04e57f9ef873 planemo upload commit 6e3286c6569d531846474dcd6959378af0317ce3-dirty
yating-l
parents: 19
diff changeset
11 <destination_directory>$INSTALL_DIR</destination_directory>
04e57f9ef873 planemo upload commit 6e3286c6569d531846474dcd6959378af0317ce3-dirty
yating-l
parents: 19
diff changeset
12 </action>
04e57f9ef873 planemo upload commit 6e3286c6569d531846474dcd6959378af0317ce3-dirty
yating-l
parents: 19
diff changeset
13 <action type="set_environment">
04e57f9ef873 planemo upload commit 6e3286c6569d531846474dcd6959378af0317ce3-dirty
yating-l
parents: 19
diff changeset
14 <environment_variable name="ZOE" action="set_to">$INSTALL_DIR</environment_variable>
04e57f9ef873 planemo upload commit 6e3286c6569d531846474dcd6959378af0317ce3-dirty
yating-l
parents: 19
diff changeset
15 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
04e57f9ef873 planemo upload commit 6e3286c6569d531846474dcd6959378af0317ce3-dirty
yating-l
parents: 19
diff changeset
16 </action>
04e57f9ef873 planemo upload commit 6e3286c6569d531846474dcd6959378af0317ce3-dirty
yating-l
parents: 19
diff changeset
17 </actions>
04e57f9ef873 planemo upload commit 6e3286c6569d531846474dcd6959378af0317ce3-dirty
yating-l
parents: 19
diff changeset
18 </actions_group>
04e57f9ef873 planemo upload commit 6e3286c6569d531846474dcd6959378af0317ce3-dirty
yating-l
parents: 19
diff changeset
19 </install>
04e57f9ef873 planemo upload commit 6e3286c6569d531846474dcd6959378af0317ce3-dirty
yating-l
parents: 19
diff changeset
20 <readme>SNAP is a general purpose gene finding program suitable for both eukaryotic
04e57f9ef873 planemo upload commit 6e3286c6569d531846474dcd6959378af0317ce3-dirty
yating-l
parents: 19
diff changeset
21 and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid
04e57f9ef873 planemo upload commit 6e3286c6569d531846474dcd6959378af0317ce3-dirty
yating-l
parents: 19
diff changeset
22 Parser.
04e57f9ef873 planemo upload commit 6e3286c6569d531846474dcd6959378af0317ce3-dirty
yating-l
parents: 19
diff changeset
23 </readme>
4
9a301a99a56c planemo upload commit 0ba99fe246099cc1827f71f2722d253becee64ba
yating-l
parents:
diff changeset
24 </package>
9a301a99a56c planemo upload commit 0ba99fe246099cc1827f71f2722d253becee64ba
yating-l
parents:
diff changeset
25 </tool_dependency>