Mercurial > repos > yating-l > regtools_junctions_extract
comparison tool_dependencies.xml @ 0:2626c5b4c665 draft
planemo upload commit db634d933827ebc78981c7a0aa18205a85fa42e6-dirty
| author | yating-l |
|---|---|
| date | Mon, 19 Dec 2016 13:07:32 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:2626c5b4c665 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="regtools" version="0.3.0"> | |
| 4 <install version="1.0"> | |
| 5 <actions> | |
| 6 <action type="shell_command">git clone --recursive https://github.com/griffithlab/regtools.git</action> | |
| 7 <action type="make_directory">build</action> | |
| 8 <action type="change_directory">build</action> | |
| 9 | |
| 10 <action type="set_environment_for_install"> | |
| 11 <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> | |
| 12 <package name="cmake" version="3.2.3" /> | |
| 13 </repository> | |
| 14 </action> | |
| 15 <action type="shell_command">cmake ..</action> | |
| 16 | |
| 17 <action type="shell_command">make</action> | |
| 18 <action type="move_file"> | |
| 19 <source>regtools</source> | |
| 20 <destination>$INSTALL_DIR</destination> | |
| 21 </action> | |
| 22 <action type="set_environment"> | |
| 23 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> | |
| 24 </action> | |
| 25 </actions> | |
| 26 </install> | |
| 27 </package> | |
| 28 </tool_dependency> |