annotate pslToBed.xml @ 0:e197661910fb draft default tip

planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
author yating-l
date Wed, 28 Dec 2016 12:30:14 -0500
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
1 <tool id="pslToBed" name="pslToBed" version="0.1.0">
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
2 <requirements>
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
3 <!-- Requires Conda -->
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
4 <requirement type="package" version="324">ucsc-psltobed</requirement>
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
5 </requirements>
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
6 <stdio>
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
7 <exit_code range="1:" />
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
8 </stdio>
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
9 <command><![CDATA[
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
10 pslToBed $input $output
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
11 ]]></command>
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
12 <inputs>
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
13 <param name="input" label="Psl file" type="data" format="psl" />
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
14 </inputs>
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
15 <outputs>
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
16 <data name="output" format="bed" />
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
17 </outputs>
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
18 <help><![CDATA[
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
19 Transform a Psl format file to a Bed format file.
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
20
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
21
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
22 Input: Psl File
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
23
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
24 Ouput: Bed File
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
25 ]]></help>
e197661910fb planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
yating-l
parents:
diff changeset
26 </tool>