Mercurial > repos > yating-l > package_snap_0_1_0

changeset 5:0bc612de916e draft default tip

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planemo upload commit 0ba99fe246099cc1827f71f2722d253becee64ba
author yating-l
date Thu, 21 Jul 2016 17:25:37 -0400
parents 9b410d18d689
children
files tool_dependencies.xml
diffstat 1 files changed, 9 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Jul 21 14:31:24 2016 -0400
+++ b/tool_dependencies.xml	Thu Jul 21 17:25:37 2016 -0400
@@ -4,16 +4,21 @@
 	<install version="0.1.0">
             <actions>
                 <action type="download_by_url">http://korflab.ucdavis.edu/Software/snap-2013-11-29.tar.gz</action>
+                <action type="shell_command">rm snap-2013-11-29.tar.gz</action>
+                <action type="move_directory_files">
+                    <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR</destination_directory>
+                </action>
                 <action type="shell_command">make</action>
                 <action type="set_environment">
                     <environment_variable name="ZOE" action="set_to">$INSTALL_DIR</environment_variable>
-                    <environment_variable name="SNAP_PATH" action="set_to">$INSTALL_DIR</environment_variable>
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                 </action>
             </actions>
-        </install>
-        <readme>SNAP is a general purpose gene finding program suitable for both eukaryotic
+    </install>
+    <readme>SNAP is a general purpose gene finding program suitable for both eukaryotic
             and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid
             Parser.
-        </readme>
+    </readme>
     </package>
 </tool_dependency>