Mercurial > repos > yating-l > jbrowsearchivecreator
view spliceJunctions.as @ 49:be34d213ec6a draft
planemo upload for repository https://github.com/goeckslab/jbrowse-archive-creator.git commit e526b4e8bef4677b832e940bacb8969a18efc3e3
| author | yating-l |
|---|---|
| date | Wed, 20 Jun 2018 17:23:48 -0400 |
| parents | 31a41ce128cc |
| children |
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table spliceJunctions "Predicted splice junctions" ( string chrom; "Reference sequence chromosome or scaffold" uint chromStart; "Start position in chromosome" uint chromEnd; "End position in chromosome" string name; "Name of item" uint score; "Score from 0-1000" char[1] strand; "+ or -" uint thickStart; "Start of where display should be thick (start codon)" uint thickEnd; "End of where display should be thick (stop codon)" uint reserved; "Used as itemRgb as of 2004-11-22" int blockCount; "Number of blocks" int[blockCount] blockSizes; "Comma separated list of block sizes" int[blockCount] chromStarts; "Start positions relative to chromStart" uint junctionScore; "Number of reads supporting the splice junction" )
